mRNA_H-elongata_contig127117.2014.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig127117.2014.1
Unique NamemRNA_H-elongata_contig127117.2014.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig127117.2014.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig127117contigH-elongata_contig127117:1259..1817 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size559
Cds size390
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929754.2136729-CDS-H-elongata_contig127117:1258..16481622929754.2136729-CDS-H-elongata_contig127117:1258..1648Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127117 1259..1648 +
1691679144.887047-CDS-H-elongata_contig127117:1258..16481691679144.887047-CDS-H-elongata_contig127117:1258..1648Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127117 1259..1648 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929754.2251604-UTR-H-elongata_contig127117:1648..18171622929754.2251604-UTR-H-elongata_contig127117:1648..1817Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig127117 1649..1817 +
1691679144.894295-UTR-H-elongata_contig127117:1648..18171691679144.894295-UTR-H-elongata_contig127117:1648..1817Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig127117 1649..1817 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig127117.2014.1prot_H-elongata_contig127117.2014.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig127117 1259..1648 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig127117.2014.1

>prot_H-elongata_contig127117.2014.1 ID=prot_H-elongata_contig127117.2014.1|Name=mRNA_H-elongata_contig127117.2014.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=130bp
MASDIEAPLAAGDKGRDSTGGVLPTVFRSQVSGGGSSGGGSGGGGVGGGP
YLSPPLTGPSLTGRWSEESRSVSWCSDNYLSSEHFGTSSSSNSNGGGGGR
DSSSPPDPSSQAPPPSERSRSRPRRQAPR*
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mRNA from alignment at H-elongata_contig127117:1259..1817+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig127117.2014.1 ID=mRNA_H-elongata_contig127117.2014.1|Name=mRNA_H-elongata_contig127117.2014.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=559bp|location=Sequence derived from alignment at H-elongata_contig127117:1259..1817+ (Himanthalia elongata Himel1 dioecious)
ATGGCTTCGGATATCGAGGCGCCGCTTGCGGCCGGGGATAAGGGACGCGA
CAGCACCGGCGGGGTGCTTCCAACCGTTTTTCGCTCCCAGGTTAGCGGCG
GGGGCAGTAGCGGGGGTGGTAGTGGTGGAGGAGGAGTAGGGGGAGGGCCG
TATTTGTCCCCCCCTTTAACCGGCCCCTCTCTAACCGGACGGTGGTCGGA
AGAGTCGCGGTCAGTGTCGTGGTGCTCTGACAACTACCTTAGCTCAGAAC
ACTTCGGCACGAGCAGCAGCAGCAATAGCAACGGTGGGGGTGGAGGCCGG
GATTCGTCGTCGCCCCCCGACCCGTCCTCTCAGGCGCCCCCACCATCAGA
GCGCTCACGCTCACGCCCTCGCCGCCAAGCGCCTCGGTAAAAAGGTGGGC
GCGTTCTGGTCTCGAAGAAGCATGTCGTGTTGGGCGTGTTGTGGGAAAGT
ACGTCCGTACCCAGAGGAGTTATATATCTAGGCACCGTGAGGTGCGACTA
CCAGCTTACAAGTTCAGGGAGTTGTTTGTTTGATTCGGCGTGTTTGTCTT
GGCAGGAGG
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Coding sequence (CDS) from alignment at H-elongata_contig127117:1259..1817+

>mRNA_H-elongata_contig127117.2014.1 ID=mRNA_H-elongata_contig127117.2014.1|Name=mRNA_H-elongata_contig127117.2014.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=780bp|location=Sequence derived from alignment at H-elongata_contig127117:1259..1817+ (Himanthalia elongata Himel1 dioecious)
ATGGCTTCGGATATCGAGGCGCCGCTTGCGGCCGGGGATAAGGGACGCGA
CAGCACCGGCGGGGTGCTTCCAACCGTTTTTCGCTCCCAGGTTAGCGGCG
GGGGCAGTAGCGGGGGTGGTAGTGGTGGAGGAGGAGTAGGGGGAGGGCCG
TATTTGTCCCCCCCTTTAACCGGCCCCTCTCTAACCGGACGGTGGTCGGA
AGAGTCGCGGTCAGTGTCGTGGTGCTCTGACAACTACCTTAGCTCAGAAC
ACTTCGGCACGAGCAGCAGCAGCAATAGCAACGGTGGGGGTGGAGGCCGG
GATTCGTCGTCGCCCCCCGACCCGTCCTCTCAGGCGCCCCCACCATCAGA
GCGCTCACGCTCACGCCCTCGCCGCCAAGCGCCTCGGTAAATGGCTTCGG
ATATCGAGGCGCCGCTTGCGGCCGGGGATAAGGGACGCGACAGCACCGGC
GGGGTGCTTCCAACCGTTTTTCGCTCCCAGGTTAGCGGCGGGGGCAGTAG
CGGGGGTGGTAGTGGTGGAGGAGGAGTAGGGGGAGGGCCGTATTTGTCCC
CCCCTTTAACCGGCCCCTCTCTAACCGGACGGTGGTCGGAAGAGTCGCGG
TCAGTGTCGTGGTGCTCTGACAACTACCTTAGCTCAGAACACTTCGGCAC
GAGCAGCAGCAGCAATAGCAACGGTGGGGGTGGAGGCCGGGATTCGTCGT
CGCCCCCCGACCCGTCCTCTCAGGCGCCCCCACCATCAGAGCGCTCACGC
TCACGCCCTCGCCGCCAAGCGCCTCGGTAA
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