mRNA_H-elongata_contig127091.2012.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig127091.2012.1
Unique NamemRNA_H-elongata_contig127091.2012.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig127091.2012.1 vs. uniprot
Match: A0A6P0N5L4_9CYAN (Patatin-like protein n=1 Tax=Moorena sp. SIO3C2 TaxID=2607842 RepID=A0A6P0N5L4_9CYAN)

HSP 1 Score: 384 bits (987), Expect = 9.710e-117
Identity = 203/435 (46.67%), Postives = 280/435 (64.37%), Query Frame = 1
Query:    1 QRGGITKAASTLISPPPAPRDSRTLATLRGKHPTEDPAAI-------------PLDAQGQIPEMENLFEEATVKAVIKKANPQSAAGPSGLRYSHLQAALCDELVENLAAFATLVFSSRVLPQVFWTLHTSANLSALGQKARPVACGDVLQRVIDAVFCRRYGKKLADYFQPWGQYGVAVSGGVEIMALTATLGFEDGYTILSYDGQNAFNSIYRHKFLPALAEIVLSMVPYASNLYAREPTKLLFELDGGGLEVVESARGVKQGCNLGPLCYSAGSLKILNEFRASPPVPGARAVSFIDDITVILPPELSLDMTAIGKVTEWLQKRLGVEGISLNRRKSQALLAYGVGPEQLTEEQR-------------GMSVVGVPVETEQFQRDFVQKAVNGEPAELVRALVPMEDAQASFQILRLSATSRLSYLLRTVPP 1227
            QRGG++KAASTL++PP  PR++ TL TLR KHP E    I             P     +I  +E  F   TV A I++ NPQ + GPSGLR+S LQ++L  EL E +A   +++F    LP  FW LHTSANLSA+G K RP+A GD+ +R++  V CR+YG  LA++F+P GQYGVAV GG E++A  A L  + G  +L+YD +NAFNS+ R   LPALA+++  M+PYA+N+YAREP KLL++ D G + V+ SA GV+QGCNLGPLCYSAG LK+L +FRA+PPV GA+ ++FIDD+ V+LP   + +  A   VT W+Q  +   G++LNR KS+ L   G   +   E+ R             GM +VGVPV    + +        GEP +L++ +  ++DAQAS QILR SA +RL++LLR++PP
Sbjct: 1091 QRGGLSKAASTLLAPPSPPRNAETLETLRKKHPGESQQEIAEACCEATARLSRPPPGVSRIEAVEEPFATETVTATIRRGNPQGSPGPSGLRFSLLQSSLTPELCEAIAKLCSVIFDGSHLPDSFWQLHTSANLSAIGDKCRPIAVGDLFRRIVGGVICRQYGPSLAEHFEPQGQYGVAVPGGTELLAARAFLAHQKGQCLLAYDARNAFNSMKRSAILPALADLIPPMLPYATNIYAREPPKLLYKTDSG-MAVIPSATGVQQGCNLGPLCYSAGLLKLLRDFRANPPVVGAQLMAFIDDLVVLLPKNHACNPAAAEAVTTWIQANMQPLGVALNRSKSKILFPPGTDVKSWPEKDRETLERTQLAVAEGGMRIVGVPVGEPDYIKRSALDIARGEPTDLLKEIASLDDAQASLQILRFSAATRLNFLLRSLPP 1524          
BLAST of mRNA_H-elongata_contig127091.2012.1 vs. uniprot
Match: A0A6H5JCM0_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCM0_9PHAE)

HSP 1 Score: 369 bits (946), Expect = 1.430e-116
Identity = 208/439 (47.38%), Postives = 273/439 (62.19%), Query Frame = 1
Query:    1 QRGGITKAASTLISPPPAPRDSRTLATLRGKHPTEDPAAIP------LDAQGQ---------IPEMENLFEEATVKAVIKKANPQSAAGPSGLRYSHLQAA-LCDELVENLAAFATLVFS-SRVLPQVFWTLHTSANLSALGQKARPVACGDVLQRVIDAVFCRRYGKKLADYFQPWGQYGVAVSGGVEIMALTATLGFEDGYTILSYDGQNAFNSIYRHKFLPALAEIVLSMVPYASNLYAREPTKLLFELDGGGLEVVESARGVKQGCNLGPLCYSAGSLKILNEFRASPPVPGARAVSFIDDITVILPPELSLDMTAIGKVTEWLQKRLGVEGISLNRRKSQALLAYGVGPEQLTEEQR-------------GMSVVGVPVETEQFQRDFVQKAVNGEPAELVRALVPMEDAQASFQILRLSATSRLSYLLRTVPP 1227
            + GGITKAAS LISP P+PR++ TL  LR  HP EDP  I       + A G          + E +  FE   +K  +KKANPQSA GP GLR+S+LQA  + D   E LA F+  VF     LP  FW LHTSANLSALG+K RP+A G VL+R+I   FCR+Y   +A+ F+   Q+G  V GGVEI+A TA L  + G TILS+DG+NA+NS+ R   LPA+A     +V Y  N+YAR   KLLF+++ G +EVV S RGV+QGCNLG   +  G L I+ EF   PPVPG + + ++DD+   LPP L+ +M AI  VT W+Q+RL  +GI L+  KS+ L   G+    LT +++             GM VVG+PV TE+FQR+FV K   G+PAEL+  L  ++D QAS+Q+LRLS   RL +LLRT+ P
Sbjct:   51 ESGGITKAASALISPAPSPRNNDTLEHLRNLHPNEDPDDIATAWDSSIKAAGDRIKTHKIDSVAEADEPFEIKFIKQTVKKANPQSAPGPDGLRFSYLQAGGMSDFFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNNKPPVPGVKLIGYVDDLQAHLPPGLARNMQAISTVTNWIQERLSQKGIELSLPKSKVLFPEGLCMSSLTNDEQQQLTKIGLSVTEGGMPVVGIPVGTEEFQRNFVSKIARGDPAELILRLATLDDPQASYQLLRLSGVPRLFHLLRTIAP 489          
BLAST of mRNA_H-elongata_contig127091.2012.1 vs. uniprot
Match: A0A6H5KGJ4_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGJ4_9PHAE)

HSP 1 Score: 360 bits (925), Expect = 5.270e-116
Identity = 210/439 (47.84%), Postives = 271/439 (61.73%), Query Frame = 1
Query:    1 QRGGITKAASTLISPPPAPRDSRTLATLRGKHPTEDPAAIP------LDAQGQ---------IPEMENLFEEATVKAVIKKANPQSAAGPSGLRYSHLQAA-LCDELVENLAAFATLVFS-SRVLPQVFWTLHTSANLSALGQKARPVACGDVLQRVIDAVFCRRYGKKLADYFQPWGQYGVAVSGGVEIMALTATLGFEDGYTILSYDGQNAFNSIYRHKFLPALAEIVLSMVPYASNLYAREPTKLLFELDGGGLEVVESARGVKQGCNLGPLCYSAGSLKILNEFRASPPVPGARAVSFIDDITVILPPELSLDMTAIGKVTEWLQKRLGVEGISLNRRKSQALLAYGVGPEQLT-EEQR------------GMSVVGVPVETEQFQRDFVQKAVNGEPAELVRALVPMEDAQASFQILRLSATSRLSYLLRTVPP 1227
            + GGITKAAS LISP P+PR++ TL  LR  HP EDP  I       + A G          + E +  FE   +K  +KKANPQSA GP GLR+S+LQA  + D   E LA F+  VF     LP  FW LHTSANLSALG+K RP+A G VL+R+I   FC +Y   +A+ F+   Q+G  V GGVEI+A TA L  + G TILS+DG+NA+NS+ R   LPA+A     +V Y  N+YAR   KLLF+++ G +EVV S RGV+QGCNLG   +  G L I+ EF   PPVPGA+ + ++DD+ V LPP L+ ++ AI  VT W+Q  L  +GI L+  KS+ L   G+    LT +EQR            GM++VGVPV TE FQR FV     G PAEL+R L  ++D QAS+Q+LRLS   RL +LLRT+ P
Sbjct:   51 ESGGITKAASALISPAPSPRNNDTLEHLRNLHPNEDPDDIATAWDSSIKAAGDRIKTHKIDSVAEADEPFEIKFIKQTVKKANPQSAPGPDGLRFSYLQAGGMSDFFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCHQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNNKPPVPGAKLIGYVDDLQVHLPPGLARNIQAIATVTNWIQDHLLQKGIELSLPKSKVLFPEGLFFSSLTNDEQRDLTKTGLSVAEGGMAIVGVPVGTECFQRSFVTNFARGNPAELIRRLSTLDDPQASYQLLRLSGVPRLFHLLRTIAP 489          
BLAST of mRNA_H-elongata_contig127091.2012.1 vs. uniprot
Match: A0A6H5LN63_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LN63_9PHAE)

HSP 1 Score: 368 bits (945), Expect = 2.620e-114
Identity = 207/439 (47.15%), Postives = 270/439 (61.50%), Query Frame = 1
Query:    1 QRGGITKAASTLISPPPAPRDSRTLATLRGKHPTEDPAAIPLDAQGQIP---------------EMENLFEEATVKAVIKKANPQSAAGPSGLRYSHLQAA-LCDELVENLAAFATLVFS-SRVLPQVFWTLHTSANLSALGQKARPVACGDVLQRVIDAVFCRRYGKKLADYFQPWGQYGVAVSGGVEIMALTATLGFEDGYTILSYDGQNAFNSIYRHKFLPALAEIVLSMVPYASNLYAREPTKLLFELDGGGLEVVESARGVKQGCNLGPLCYSAGSLKILNEFRASPPVPGARAVSFIDDITVILPPELSLDMTAIGKVTEWLQKRLGVEGISLNRRKSQALLAYGVGPEQLTEEQR-------------GMSVVGVPVETEQFQRDFVQKAVNGEPAELVRALVPMEDAQASFQILRLSATSRLSYLLRTVPP 1227
            + GGITKAAS LISP P+PR++ TL  LR  HP EDP  I       I                E +  FE   +K  +KKANPQSA GP GLR+S+LQA  + D   E LA F+  VF     LP  FW LHTSANLSALG+K RP+A G VL+R+I   FCR+Y   +A+ F+   Q+G  V GGVEI+A TA L  + G TILS+DG+NA+NS+ R   LPA+A     +V Y  N+YAR   KLLF+++ G +EVV S RGV+QGCNLG   +  G L I+ EF   PPVPG + + ++DD+   LPP L+ +M AI  VT W+Q+RL  +GI L+  KS+ L   G+    LT +++             GM VVG+PV TE+FQR+FV K   G+PAEL+  L  ++D QAS+Q+LRLS   RL +LLRT+ P
Sbjct:   51 ESGGITKAASALISPAPSPRNNDTLEHLRNLHPNEDPDDIATAWDSSIKVAGDRIKTHKIDSVAEADEPFEIKFIKQTVKKANPQSAPGPDGLRFSYLQAGGMSDSFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNNKPPVPGVKLIGYVDDLQAHLPPGLARNMQAISTVTNWIQERLSQKGIELSLPKSKVLFPEGLCMSSLTNDEQQQLTKIGLSVAEGGMPVVGIPVGTEEFQRNFVSKIARGDPAELILRLATLDDPQASYQLLRLSGVPRLFHLLRTIAP 489          
BLAST of mRNA_H-elongata_contig127091.2012.1 vs. uniprot
Match: A0A6H5KQ62_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ62_9PHAE)

HSP 1 Score: 300 bits (769), Expect = 1.740e-95
Identity = 168/347 (48.41%), Postives = 218/347 (62.82%), Query Frame = 1
Query:    1 QRGGITKAASTLISPPPAPRDSRTLATLRGKHPTEDPAAIP------LDAQGQ---------IPEMENLFEEATVKAVIKKANPQSAAGPSGLRYSHLQAA-LCDELVENLAAFATLVFS-SRVLPQVFWTLHTSANLSALGQKARPVACGDVLQRVIDAVFCRRYGKKLADYFQPWGQYGVAVSGGVEIMALTATLGFEDGYTILSYDGQNAFNSIYRHKFLPALAEIVLSMVPYASNLYAREPTKLLFELDGGGLEVVESARGVKQGCNLGPLCYSAGSLKILNEFRASPPVPGARAVSFIDDITVILPPELSLDMTAIGKVTEWLQKRLGVEGISLNRRKSQAL 990
            + GGITKAAS LISP P+PR++ TL  LR  HP EDP  I       + A G          + E +  FE   +K  +KKANPQSA GP GLR+S+LQA  + D   E LA F+  VF     LP  FW LHTSANLSALG+K RP+A G VL+R+I   FCR+Y   +A+ F+   Q+G  V GGVEI+A TA L  + G TILS+DG+NA+NS+ R   LPA+A     +V Y  N+YAR   KLLF+++ G +EVV S RGV+QGCNLG   +  G L I+ EF   PPVPG + + ++DD+   LPP L+ +M AI  VT W+Q+RL  +GI L+  KS+ L
Sbjct:   51 ESGGITKAASALISPAPSPRNNDTLEHLRNLHPNEDPDDIATAWDSSIKAAGDRIETHKIDSVAEPDEPFEIKFIKQTVKKANPQSAPGPDGLRFSYLQAGGMSDFFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNNKPPVPGVKLIGYVDDLQAHLPPGLARNMQAISTVTNWIQERLSQKGIELSLPKSKVL 397          
BLAST of mRNA_H-elongata_contig127091.2012.1 vs. uniprot
Match: A0A6H5KSY9_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSY9_9PHAE)

HSP 1 Score: 283 bits (725), Expect = 1.430e-87
Identity = 159/337 (47.18%), Postives = 209/337 (62.02%), Query Frame = 1
Query:  259 LCDELVENLAAFATLVFS-SRVLPQVFWTLHTSANLSALGQKARPVACGDVLQRVIDAVFCRRYGKKLADYFQPWGQYGVAVSGGVEIMALTATLGFEDGYTILSYDGQNAFNSIYRHKFLPALAEIVLSMVPYASNLYAREPTKLLFELDGGGLEVVESARGVKQGCNLGPLCYSAGSLKILNEFRASPPVPGARAVSFIDDITVILPPELSLDMTAIGKVTEWLQKRLGVEGISLNRRKSQALLAYGVGPEQLT-EEQR------------GMSVVGVPVETEQFQRDFVQKAVNGEPAELVRALVPMEDAQASFQILRLSATSRLSYLLRTVPP 1227
            + D   E LA F+  VF     LP  FW LHTSANLSALG+K RP+A G VL+R+I   FCR+Y   +A+ F+   Q+G  V GGVEI+A TA L  + G TILS+DG+NA+NS+ R   LPA+A     +  Y  N+YAR   KLLF+++ G +EVV S RGV+QGCNLG   +  G L I+ EF   PPVPGA+ + ++DD+ V LPP L+ ++ AI  VT W+Q  L  +GI L+  KS  L   G+    LT +EQR            GM++VGVPV TE FQR FV     G PAEL+  L  ++D Q S+Q+LR+S   RL +LLRT+ P
Sbjct:    1 MSDYFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLAKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNNKPPVPGAKLIGYVDDLQVHLPPGLARNIQAIATVTNWIQDHLLQKGIELSLPKSNVLFPEGLFFSSLTNDEQRDLTKTGLSVAEGGMAIVGVPVGTECFQRSFVTNFARGIPAELIPRLSTLDDPQTSYQLLRMSGVPRLFHLLRTIAP 337          
BLAST of mRNA_H-elongata_contig127091.2012.1 vs. uniprot
Match: A0A6H5K1H0_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H0_9PHAE)

HSP 1 Score: 294 bits (752), Expect = 4.590e-86
Identity = 158/337 (46.88%), Postives = 213/337 (63.20%), Query Frame = 1
Query:  259 LCDELVENLAAFATLVFS-SRVLPQVFWTLHTSANLSALGQKARPVACGDVLQRVIDAVFCRRYGKKLADYFQPWGQYGVAVSGGVEIMALTATLGFEDGYTILSYDGQNAFNSIYRHKFLPALAEIVLSMVPYASNLYAREPTKLLFELDGGGLEVVESARGVKQGCNLGPLCYSAGSLKILNEFRASPPVPGARAVSFIDDITVILPPELSLDMTAIGKVTEWLQKRLGVEGISLNRRKSQALLAYGVGPEQLTEEQR-------------GMSVVGVPVETEQFQRDFVQKAVNGEPAELVRALVPMEDAQASFQILRLSATSRLSYLLRTVPP 1227
            + D   E LA F+  VF     LP   W LHTSANLSALG+K RP+A G VL+R+I   F R+Y   +A+ F+   Q+G  V GGVEI+A TA L  + G TILS+DG+NA+NS+ R   LPA+A +   +V Y  N+YAR   KLLF+++ G +EVV S RGV+QGCNLG   +  G L I+ EF   PPVPG + + ++DD+   LPP L+ +M AI  VT W+Q+RL  +GI L+  KS+ L   G+    LT +++             GM VVG+PV TE+FQR+FV K   G+PAEL+  L  ++D QAS+Q+LRLS   RL +LLRT+ P
Sbjct:    1 MSDSFTETLADFSFKVFYYGDELPDFLWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFYRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATLTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNNKPPVPGVKLIGYVDDLQAHLPPGLARNMQAISTVTNWIQERLSQKGIELSLPKSKVLFPEGLCMSSLTNDEQQQLTKIGLSVAEGGMPVVGIPVGTEEFQRNFVSKIARGDPAELILRLATLDDPQASYQLLRLSGVPRLFHLLRTIAP 337          
BLAST of mRNA_H-elongata_contig127091.2012.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE)

HSP 1 Score: 172 bits (437), Expect = 2.220e-43
Identity = 136/441 (30.84%), Postives = 208/441 (47.17%), Query Frame = 1
Query:    7 GGITKAASTLISPPPAPRDSRTLATLRGKHPTEDPAAIPLDAQGQIPEM--------------ENLFEEATVKAVIKKANPQSAAGPSGLRYSHLQAALCDELVEN------LAAFATLVFSSRVLPQVFWTLHTSANLSALGQKARPVACGDVLQRVIDAVFCRRYGKKLADYFQPWGQYGVAVSGGVEIMALTATLGFEDGYTILSYDGQNAFNSIYRHKFLPALAEIVLSMVPYASNLYAREPTKLLFELDGGGLEVVESARGVKQGCNLGPLCYSAGSLKILNEFRASPPVPGARAVSFIDDITVILPPELSLDMTAIGKVTEWLQKRLGVEGISLNRRKSQAL-------------LAYGVGPEQLTEEQRGMSVVGVPVETEQFQRDFVQKAVNGEPAELVRALVP-MEDAQASFQILRLSATSRLSYLLRTVPP 1227
            GG+  AA  L++ P +P +  T   L+ K P ED AA+       I E               E  F+   +  VI   +  S AG  G R+SHL++    ++          + +  LV      P  FWTL   ++L ALG+K RPV  G   +R+I A   R++  KL + F+   Q+GVAV+GGVE +A+ A L  + G  I+  D  NAFN+  R   +   A+ +  +V Y +  Y   P   ++E+D G    +E   GV+QG  +GP  +S   + I+ + +      G    +++DDIT+ L     L   ++  +T+ L   L   GI +NR KS AL             L  GVG   LT    G++VVGVP+ T+ + R+F  K +    AE +  ++P M D Q +  I  LS   R +Y+ R + P
Sbjct:  472 GGVKDAARALLAEPRSPGNDETWERLKAKFPLEDSAAVEQAVADAIAESITEEENGSAPRWRPEEEFDPQVLIEVINSRSSNSGAGNDGQRFSHLKSITNTKIGREDFCGAMSSLWRRLVNDPNTFPPEFWTLWKQSSLIALGEKCRPVCIGMTWRRLIAAGTVRQWKPKLEEMFREANQFGVAVAGGVERVAMEAQLVHQTGNWIIQTDCSNAFNTGKRTAIMAQAAKSLPDLVGYIARCYDEIPATAVYEMDSGERRTLECTSGVQQGDGMGPPLFSLILIPIILKLQDKYKPLGVAFKAYMDDITLHLK---DLTEESVQAMTD-LVDELAEVGIVVNRAKSSALPPPGHMITDQQRRLLEGVG---LTVAGEGITVVGVPIGTDNYVREFAMKVITEGGAEKLARMLPLMSDRQVANLITSLSLIQRSAYIERGIDP 905          
BLAST of mRNA_H-elongata_contig127091.2012.1 vs. uniprot
Match: A0A6H5KKQ2_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKQ2_9PHAE)

HSP 1 Score: 171 bits (433), Expect = 2.810e-43
Identity = 132/437 (30.21%), Postives = 207/437 (47.37%), Query Frame = 1
Query:    7 GGITKAASTLISPPPAPRDSRTLATLRGKHPTEDPAAIPL------------DAQGQIPEM--ENLFEEATVKAVIKKANPQSAAGPSGLRYSHLQAALCDELVEN------LAAFATLVFSSRVLPQVFWTLHTSANLSALGQKARPVACGDVLQRVIDAVFCRRYGKKLADYFQPWGQYGVAVSGGVEIMALTATLGFEDGYTILSYDGQNAFNSIYRHKFLPALAEIVLSMVPYASNLYAREPTKLLFELDGGGLEVVESARGVKQGCNLGPLCYSAGSLKILNEFRASPPVPGARAVSFIDDITVILPPELSLDMTAIG-KVTEWLQKRLGVEGISLNRRKSQALLAYG----------VGPEQLTEEQRGMSVVGVPVETEQFQRDFVQKAVNGEPAE-LVRALVPMEDAQASFQILRLSATSRLSYLLRTV 1221
            GG+  AA  L++  P+P +  T A L+ K P EDP  +              + +G  P    E  F+   +  V+ + +  S AG  G R+SHL++ +  ++          + +  L+      P  FWTL   ++L ALG+K RPV  G   +R+I A   R +  KL + F+   Q+GVAV+GGVE +A+ A L  + G+ ++  D  NAFN+  R   +   ++ V  +V Y +  Y   P K ++ +D G    +E   GV+QG  +GP  +    + I+ + RA     G    +++DDI++        D+TA   +VT  L   L   GI +NR KS AL   G          +G   L   + G++VVGVP+ T+ +  D   K +    AE L R LV M D Q +  +   S T R  Y+ R +
Sbjct:  301 GGVKDAARALLADQPSPGNDETWARLKAKFPHEDPVQVEQAIAEAIAASRTEEEEGSAPRWRPETEFDPQVLLQVVNRRSSNSGAGNDGPRFSHLKSIVNTKIGREEFSNAMSSLWRRLIKDPHAFPPEFWTLLKQSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAIDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQASKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISLHFK-----DITAENIQVTPDLVDELEAVGIIVNRGKSSALPPPGHDVTPTERRPLGDAGLPIAEEGITVVGVPIGTDAYVEDIAMKVITEGGAEKLARLLVRMPDKQVAHLVTSQSLTQRSGYIERGI 732          
BLAST of mRNA_H-elongata_contig127091.2012.1 vs. uniprot
Match: A0A6H5JI32_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI32_9PHAE)

HSP 1 Score: 168 bits (426), Expect = 3.860e-42
Identity = 129/436 (29.59%), Postives = 205/436 (47.02%), Query Frame = 1
Query:    7 GGITKAASTLISPPPAPRDSRTLATLRGKHPTEDPAAIPL------------DAQGQIPEM--ENLFEEATVKAVIKKANPQSAAGPSGLRYSHLQAALCDELVEN------LAAFATLVFSSRVLPQVFWTLHTSANLSALGQKARPVACGDVLQRVIDAVFCRRYGKKLADYFQPWGQYGVAVSGGVEIMALTATLGFEDGYTILSYDGQNAFNSIYRHKFLPALAEIVLSMVPYASNLYAREPTKLLFELDGGGLEVVESARGVKQGCNLGPLCYSAGSLKILNEFRASPPVPGARAVSFIDDITVILPPELSLDMTAIGKVTEWLQKRLGVEGISLNRRKSQALLAYG----------VGPEQLTEEQRGMSVVGVPVETEQFQRDFVQKAV-NGEPAELVRALVPMEDAQASFQILRLSATSRLSYLLRTV 1221
            GG+  AA  L++  P+P +  T A L+ K P EDP  +              + +G  P    E  F+   +  VI   +  S AG  G R+SHL++ +  ++          + +  L+      P  FWTL   ++L ALG+K RPV  G   +R+I A   R +  KL + F+   Q+GVAV+GGVE +A+ A L  + G+ ++  D  NAFN+  R   +   A+ V  +V Y +  Y   P K ++ +D G    +E   GV+QG  +GP  +    + I+ + RA     G    +++DDI++      + ++  I  + + L+      GI +NR KS AL   G          +G   L   + G++VVGVP+ T+ +  D   K +  G   +L R LV M D Q +  +   S T R  YL R +
Sbjct:  323 GGVKDAARALLADQPSPGNDETWARLKAKFPHEDPVQVEQAIAEAKAASRTEEEEGSAPRWRPETEFDPQVLLQVINSRSSNSGAGNDGQRFSHLKSIVNTKIGREEFSNAMSSLWRRLINDPNAFPPEFWTLWKQSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISLHFKNITAENIQVIPDLVDELE----AVGIIVNRGKSSALHPPGRDVAPAERRLLGDAGLPIAEEGITVVGVPIGTDAYVEDIAIKVIAEGGADKLARMLVRMPDKQVAHLVTSQSLTQRSGYLERGI 754          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig127091.2012.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6P0N5L4_9CYAN9.710e-11746.67Patatin-like protein n=1 Tax=Moorena sp. SIO3C2 Ta... [more]
A0A6H5JCM0_9PHAE1.430e-11647.38Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KGJ4_9PHAE5.270e-11647.84Reverse transcriptase domain-containing protein n=... [more]
A0A6H5LN63_9PHAE2.620e-11447.15Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KQ62_9PHAE1.740e-9548.41Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KSY9_9PHAE1.430e-8747.18Reverse transcriptase domain-containing protein (F... [more]
A0A6H5K1H0_9PHAE4.590e-8646.88Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JH58_9PHAE2.220e-4330.84Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KKQ2_9PHAE2.810e-4330.21Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JI32_9PHAE3.860e-4229.59Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig127091contigH-elongata_contig127091:226..1575 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score93.6
Seed ortholog evalue2.3e-16
Seed eggNOG ortholog400682.PAC_15702057
EggNOG free text desc.Ribonuclease H protein
EggNOG OGsKOG1075@1,KOG1075@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size1227
Cds size1227
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig127091.2012.1prot_H-elongata_contig127091.2012.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig127091 226..1575 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929754.0758996-CDS-H-elongata_contig127091:225..3451622929754.0758996-CDS-H-elongata_contig127091:225..345Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127091 226..345 +
1691679144.850938-CDS-H-elongata_contig127091:225..3451691679144.850938-CDS-H-elongata_contig127091:225..345Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127091 226..345 +
1622929754.0947747-CDS-H-elongata_contig127091:429..13441622929754.0947747-CDS-H-elongata_contig127091:429..1344Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127091 430..1344 +
1691679144.8602257-CDS-H-elongata_contig127091:429..13441691679144.8602257-CDS-H-elongata_contig127091:429..1344Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127091 430..1344 +
1622929754.1093855-CDS-H-elongata_contig127091:1383..15751622929754.1093855-CDS-H-elongata_contig127091:1383..1575Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127091 1384..1575 +
1691679144.8697064-CDS-H-elongata_contig127091:1383..15751691679144.8697064-CDS-H-elongata_contig127091:1383..1575Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127091 1384..1575 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig127091.2012.1

>prot_H-elongata_contig127091.2012.1 ID=prot_H-elongata_contig127091.2012.1|Name=mRNA_H-elongata_contig127091.2012.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=409bp
QRGGITKAASTLISPPPAPRDSRTLATLRGKHPTEDPAAIPLDAQGQIPE
MENLFEEATVKAVIKKANPQSAAGPSGLRYSHLQAALCDELVENLAAFAT
LVFSSRVLPQVFWTLHTSANLSALGQKARPVACGDVLQRVIDAVFCRRYG
KKLADYFQPWGQYGVAVSGGVEIMALTATLGFEDGYTILSYDGQNAFNSI
YRHKFLPALAEIVLSMVPYASNLYAREPTKLLFELDGGGLEVVESARGVK
QGCNLGPLCYSAGSLKILNEFRASPPVPGARAVSFIDDITVILPPELSLD
MTAIGKVTEWLQKRLGVEGISLNRRKSQALLAYGVGPEQLTEEQRGMSVV
GVPVETEQFQRDFVQKAVNGEPAELVRALVPMEDAQASFQILRLSATSRL
SYLLRTVPP
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mRNA from alignment at H-elongata_contig127091:226..1575+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig127091.2012.1 ID=mRNA_H-elongata_contig127091.2012.1|Name=mRNA_H-elongata_contig127091.2012.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1350bp|location=Sequence derived from alignment at H-elongata_contig127091:226..1575+ (Himanthalia elongata Himel1 dioecious)
CAGCGAGGAGGCATCACTAAAGCCGCGAGCACCCTGATTTCTCCCCCACC AGCGCCTCGAGACAGCAGGACACTGGCAACGCTACGCGGCAAGCACCCCA CAGAGGATCCCGCAGCGATAGTAACAGGTTAAGAGCAGGCGGAACGACGT GCAGGCATTACAGCAGCGGACGAGCTGGAGCAACACCCGAACTTGACATA TGAGCCGTTGGATGCACAAGGCCAGATCCCAGAGATGGAGAACCTCTTCG AGGAAGCCACGGTAAAAGCTGTCATCAAGAAAGCCAACCCACAAAGCGCA GCAGGTCCGTCCGGACTACGCTACAGCCATTTGCAGGCTGCGCTGTGTGA TGAACTGGTCGAGAATCTCGCGGCGTTCGCGACGCTTGTTTTTTCCAGCC GCGTTTTGCCCCAAGTATTCTGGACACTGCACACAAGCGCCAACCTTTCC GCGCTGGGGCAAAAGGCGAGACCAGTGGCGTGCGGTGATGTCTTGCAGAG AGTTATTGATGCTGTTTTCTGCCGCCGATACGGCAAGAAGCTGGCAGATT ACTTCCAGCCCTGGGGGCAGTACGGCGTAGCAGTTTCAGGTGGAGTAGAG ATAATGGCGCTCACAGCAACACTGGGGTTTGAAGATGGTTACACCATTCT CTCATACGACGGACAAAACGCCTTCAACAGTATATATCGCCACAAGTTCC TCCCCGCGCTAGCGGAAATTGTTCTCTCAATGGTCCCCTACGCATCTAAC TTGTACGCAAGGGAACCCACAAAACTCCTGTTTGAACTAGATGGCGGAGG TTTGGAAGTGGTCGAATCAGCGCGGGGAGTAAAGCAAGGATGTAATCTAG GCCCACTTTGTTATAGCGCAGGCTCACTGAAGATTCTAAACGAATTCAGG GCTAGTCCACCGGTGCCAGGAGCGAGAGCGGTTTCGTTCATCGACGACAT CACGGTCATCCTACCACCGGAACTCTCTCTCGATATGACAGCGATAGGGA AAGTTACGGAATGGCTCCAGAAACGCCTGGGGGTAGAAGGCATCTCGCTG AACCGAAGAAAATCGCAGGCCTTACTAGCATATGGAGTTGGGCCAGAACA ACTGACGGAGGAGCAGCGGGTGGTAATTGATACCACAGGGTTCACGGTGG TCCAATAGGGGATGAGCGTTGTGGGAGTACCAGTTGAAACAGAACAGTTC CAGCGCGATTTCGTACAGAAGGCGGTTAATGGAGAGCCAGCGGAGCTTGT GAGGGCGCTGGTTCCGATGGAAGATGCCCAAGCGAGCTTTCAGATCTTGC GTTTATCTGCCACTTCTCGCCTTTCATATCTCCTTCGAACAGTCCCGCCC
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Coding sequence (CDS) from alignment at H-elongata_contig127091:226..1575+

>mRNA_H-elongata_contig127091.2012.1 ID=mRNA_H-elongata_contig127091.2012.1|Name=mRNA_H-elongata_contig127091.2012.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2454bp|location=Sequence derived from alignment at H-elongata_contig127091:226..1575+ (Himanthalia elongata Himel1 dioecious)
CAGCGAGGAGGCATCACTAAAGCCGCGAGCACCCTGATTTCTCCCCCACC
AGCGCCTCGAGACAGCAGGACACTGGCAACGCTACGCGGCAAGCACCCCA
CAGAGGATCCCGCAGCGATACAGCGAGGAGGCATCACTAAAGCCGCGAGC
ACCCTGATTTCTCCCCCACCAGCGCCTCGAGACAGCAGGACACTGGCAAC
GCTACGCGGCAAGCACCCCACAGAGGATCCCGCAGCGATACCGTTGGATG
CACAAGGCCAGATCCCAGAGATGGAGAACCTCTTCGAGGAAGCCACGGTA
AAAGCTGTCATCAAGAAAGCCAACCCACAAAGCGCAGCAGGTCCGTCCGG
ACTACGCTACAGCCATTTGCAGGCTGCGCTGTGTGATGAACTGGTCGAGA
ATCTCGCGGCGTTCGCGACGCTTGTTTTTTCCAGCCGCGTTTTGCCCCAA
GTATTCTGGACACTGCACACAAGCGCCAACCTTTCCGCGCTGGGGCAAAA
GGCGAGACCAGTGGCGTGCGGTGATGTCTTGCAGAGAGTTATTGATGCTG
TTTTCTGCCGCCGATACGGCAAGAAGCTGGCAGATTACTTCCAGCCCTGG
GGGCAGTACGGCGTAGCAGTTTCAGGTGGAGTAGAGATAATGGCGCTCAC
AGCAACACTGGGGTTTGAAGATGGTTACACCATTCTCTCATACGACGGAC
AAAACGCCTTCAACAGTATATATCGCCACAAGTTCCTCCCCGCGCTAGCG
GAAATTGTTCTCTCAATGGTCCCCTACGCATCTAACTTGTACGCAAGGGA
ACCCACAAAACTCCTGTTTGAACTAGATGGCGGAGGTTTGGAAGTGGTCG
AATCAGCGCGGGGAGTAAAGCAAGGATGTAATCTAGGCCCACTTTGTTAT
AGCGCAGGCTCACTGAAGATTCTAAACGAATTCAGGGCTAGTCCACCGGT
GCCAGGAGCGAGAGCGGTTTCGTTCATCGACGACATCACGGTCATCCTAC
CACCGGAACTCTCTCTCGATATGACAGCGATAGGGAAAGTTACGGAATGG
CTCCAGAAACGCCTGGGGGTAGAAGGCATCTCGCTGAACCGAAGAAAATC
GCAGGCCTTACTAGCATATGGAGTTGGGCCAGAACAACTGACGGAGGAGC
AGCGGCCGTTGGATGCACAAGGCCAGATCCCAGAGATGGAGAACCTCTTC
GAGGAAGCCACGGTAAAAGCTGTCATCAAGAAAGCCAACCCACAAAGCGC
AGCAGGTCCGTCCGGACTACGCTACAGCCATTTGCAGGCTGCGCTGTGTG
ATGAACTGGTCGAGAATCTCGCGGCGTTCGCGACGCTTGTTTTTTCCAGC
CGCGTTTTGCCCCAAGTATTCTGGACACTGCACACAAGCGCCAACCTTTC
CGCGCTGGGGCAAAAGGCGAGACCAGTGGCGTGCGGTGATGTCTTGCAGA
GAGTTATTGATGCTGTTTTCTGCCGCCGATACGGCAAGAAGCTGGCAGAT
TACTTCCAGCCCTGGGGGCAGTACGGCGTAGCAGTTTCAGGTGGAGTAGA
GATAATGGCGCTCACAGCAACACTGGGGTTTGAAGATGGTTACACCATTC
TCTCATACGACGGACAAAACGCCTTCAACAGTATATATCGCCACAAGTTC
CTCCCCGCGCTAGCGGAAATTGTTCTCTCAATGGTCCCCTACGCATCTAA
CTTGTACGCAAGGGAACCCACAAAACTCCTGTTTGAACTAGATGGCGGAG
GTTTGGAAGTGGTCGAATCAGCGCGGGGAGTAAAGCAAGGATGTAATCTA
GGCCCACTTTGTTATAGCGCAGGCTCACTGAAGATTCTAAACGAATTCAG
GGCTAGTCCACCGGTGCCAGGAGCGAGAGCGGTTTCGTTCATCGACGACA
TCACGGTCATCCTACCACCGGAACTCTCTCTCGATATGACAGCGATAGGG
AAAGTTACGGAATGGCTCCAGAAACGCCTGGGGGTAGAAGGCATCTCGCT
GAACCGAAGAAAATCGCAGGCCTTACTAGCATATGGAGTTGGGCCAGAAC
AACTGACGGAGGAGCAGCGGGGGATGAGCGTTGTGGGAGTACCAGTTGAA
ACAGAACAGTTCCAGCGCGATTTCGTACAGAAGGCGGTTAATGGAGAGCC
AGCGGAGCTTGTGAGGGCGCTGGTTCCGATGGAAGATGCCCAAGCGAGCT
TTCAGATCTTGCGTTTATCTGCCACTTCTCGCCTTTCATATCTCCTTCGA
ACAGTCCCGCCCGGGATGAGCGTTGTGGGAGTACCAGTTGAAACAGAACA
GTTCCAGCGCGATTTCGTACAGAAGGCGGTTAATGGAGAGCCAGCGGAGC
TTGTGAGGGCGCTGGTTCCGATGGAAGATGCCCAAGCGAGCTTTCAGATC
TTGCGTTTATCTGCCACTTCTCGCCTTTCATATCTCCTTCGAACAGTCCC
GCCC
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