mRNA_H-elongata_contig127091.2012.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig127091.2012.1 vs. uniprot
Match: A0A6P0N5L4_9CYAN (Patatin-like protein n=1 Tax=Moorena sp. SIO3C2 TaxID=2607842 RepID=A0A6P0N5L4_9CYAN) HSP 1 Score: 384 bits (987), Expect = 9.710e-117 Identity = 203/435 (46.67%), Postives = 280/435 (64.37%), Query Frame = 1
Query: 1 QRGGITKAASTLISPPPAPRDSRTLATLRGKHPTEDPAAI-------------PLDAQGQIPEMENLFEEATVKAVIKKANPQSAAGPSGLRYSHLQAALCDELVENLAAFATLVFSSRVLPQVFWTLHTSANLSALGQKARPVACGDVLQRVIDAVFCRRYGKKLADYFQPWGQYGVAVSGGVEIMALTATLGFEDGYTILSYDGQNAFNSIYRHKFLPALAEIVLSMVPYASNLYAREPTKLLFELDGGGLEVVESARGVKQGCNLGPLCYSAGSLKILNEFRASPPVPGARAVSFIDDITVILPPELSLDMTAIGKVTEWLQKRLGVEGISLNRRKSQALLAYGVGPEQLTEEQR-------------GMSVVGVPVETEQFQRDFVQKAVNGEPAELVRALVPMEDAQASFQILRLSATSRLSYLLRTVPP 1227
QRGG++KAASTL++PP PR++ TL TLR KHP E I P +I +E F TV A I++ NPQ + GPSGLR+S LQ++L EL E +A +++F LP FW LHTSANLSA+G K RP+A GD+ +R++ V CR+YG LA++F+P GQYGVAV GG E++A A L + G +L+YD +NAFNS+ R LPALA+++ M+PYA+N+YAREP KLL++ D G + V+ SA GV+QGCNLGPLCYSAG LK+L +FRA+PPV GA+ ++FIDD+ V+LP + + A VT W+Q + G++LNR KS+ L G + E+ R GM +VGVPV + + GEP +L++ + ++DAQAS QILR SA +RL++LLR++PP
Sbjct: 1091 QRGGLSKAASTLLAPPSPPRNAETLETLRKKHPGESQQEIAEACCEATARLSRPPPGVSRIEAVEEPFATETVTATIRRGNPQGSPGPSGLRFSLLQSSLTPELCEAIAKLCSVIFDGSHLPDSFWQLHTSANLSAIGDKCRPIAVGDLFRRIVGGVICRQYGPSLAEHFEPQGQYGVAVPGGTELLAARAFLAHQKGQCLLAYDARNAFNSMKRSAILPALADLIPPMLPYATNIYAREPPKLLYKTDSG-MAVIPSATGVQQGCNLGPLCYSAGLLKLLRDFRANPPVVGAQLMAFIDDLVVLLPKNHACNPAAAEAVTTWIQANMQPLGVALNRSKSKILFPPGTDVKSWPEKDRETLERTQLAVAEGGMRIVGVPVGEPDYIKRSALDIARGEPTDLLKEIASLDDAQASLQILRFSAATRLNFLLRSLPP 1524
BLAST of mRNA_H-elongata_contig127091.2012.1 vs. uniprot
Match: A0A6H5JCM0_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCM0_9PHAE) HSP 1 Score: 369 bits (946), Expect = 1.430e-116 Identity = 208/439 (47.38%), Postives = 273/439 (62.19%), Query Frame = 1
Query: 1 QRGGITKAASTLISPPPAPRDSRTLATLRGKHPTEDPAAIP------LDAQGQ---------IPEMENLFEEATVKAVIKKANPQSAAGPSGLRYSHLQAA-LCDELVENLAAFATLVFS-SRVLPQVFWTLHTSANLSALGQKARPVACGDVLQRVIDAVFCRRYGKKLADYFQPWGQYGVAVSGGVEIMALTATLGFEDGYTILSYDGQNAFNSIYRHKFLPALAEIVLSMVPYASNLYAREPTKLLFELDGGGLEVVESARGVKQGCNLGPLCYSAGSLKILNEFRASPPVPGARAVSFIDDITVILPPELSLDMTAIGKVTEWLQKRLGVEGISLNRRKSQALLAYGVGPEQLTEEQR-------------GMSVVGVPVETEQFQRDFVQKAVNGEPAELVRALVPMEDAQASFQILRLSATSRLSYLLRTVPP 1227
+ GGITKAAS LISP P+PR++ TL LR HP EDP I + A G + E + FE +K +KKANPQSA GP GLR+S+LQA + D E LA F+ VF LP FW LHTSANLSALG+K RP+A G VL+R+I FCR+Y +A+ F+ Q+G V GGVEI+A TA L + G TILS+DG+NA+NS+ R LPA+A +V Y N+YAR KLLF+++ G +EVV S RGV+QGCNLG + G L I+ EF PPVPG + + ++DD+ LPP L+ +M AI VT W+Q+RL +GI L+ KS+ L G+ LT +++ GM VVG+PV TE+FQR+FV K G+PAEL+ L ++D QAS+Q+LRLS RL +LLRT+ P
Sbjct: 51 ESGGITKAASALISPAPSPRNNDTLEHLRNLHPNEDPDDIATAWDSSIKAAGDRIKTHKIDSVAEADEPFEIKFIKQTVKKANPQSAPGPDGLRFSYLQAGGMSDFFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNNKPPVPGVKLIGYVDDLQAHLPPGLARNMQAISTVTNWIQERLSQKGIELSLPKSKVLFPEGLCMSSLTNDEQQQLTKIGLSVTEGGMPVVGIPVGTEEFQRNFVSKIARGDPAELILRLATLDDPQASYQLLRLSGVPRLFHLLRTIAP 489
BLAST of mRNA_H-elongata_contig127091.2012.1 vs. uniprot
Match: A0A6H5KGJ4_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGJ4_9PHAE) HSP 1 Score: 360 bits (925), Expect = 5.270e-116 Identity = 210/439 (47.84%), Postives = 271/439 (61.73%), Query Frame = 1
Query: 1 QRGGITKAASTLISPPPAPRDSRTLATLRGKHPTEDPAAIP------LDAQGQ---------IPEMENLFEEATVKAVIKKANPQSAAGPSGLRYSHLQAA-LCDELVENLAAFATLVFS-SRVLPQVFWTLHTSANLSALGQKARPVACGDVLQRVIDAVFCRRYGKKLADYFQPWGQYGVAVSGGVEIMALTATLGFEDGYTILSYDGQNAFNSIYRHKFLPALAEIVLSMVPYASNLYAREPTKLLFELDGGGLEVVESARGVKQGCNLGPLCYSAGSLKILNEFRASPPVPGARAVSFIDDITVILPPELSLDMTAIGKVTEWLQKRLGVEGISLNRRKSQALLAYGVGPEQLT-EEQR------------GMSVVGVPVETEQFQRDFVQKAVNGEPAELVRALVPMEDAQASFQILRLSATSRLSYLLRTVPP 1227
+ GGITKAAS LISP P+PR++ TL LR HP EDP I + A G + E + FE +K +KKANPQSA GP GLR+S+LQA + D E LA F+ VF LP FW LHTSANLSALG+K RP+A G VL+R+I FC +Y +A+ F+ Q+G V GGVEI+A TA L + G TILS+DG+NA+NS+ R LPA+A +V Y N+YAR KLLF+++ G +EVV S RGV+QGCNLG + G L I+ EF PPVPGA+ + ++DD+ V LPP L+ ++ AI VT W+Q L +GI L+ KS+ L G+ LT +EQR GM++VGVPV TE FQR FV G PAEL+R L ++D QAS+Q+LRLS RL +LLRT+ P
Sbjct: 51 ESGGITKAASALISPAPSPRNNDTLEHLRNLHPNEDPDDIATAWDSSIKAAGDRIKTHKIDSVAEADEPFEIKFIKQTVKKANPQSAPGPDGLRFSYLQAGGMSDFFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCHQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNNKPPVPGAKLIGYVDDLQVHLPPGLARNIQAIATVTNWIQDHLLQKGIELSLPKSKVLFPEGLFFSSLTNDEQRDLTKTGLSVAEGGMAIVGVPVGTECFQRSFVTNFARGNPAELIRRLSTLDDPQASYQLLRLSGVPRLFHLLRTIAP 489
BLAST of mRNA_H-elongata_contig127091.2012.1 vs. uniprot
Match: A0A6H5LN63_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LN63_9PHAE) HSP 1 Score: 368 bits (945), Expect = 2.620e-114 Identity = 207/439 (47.15%), Postives = 270/439 (61.50%), Query Frame = 1
Query: 1 QRGGITKAASTLISPPPAPRDSRTLATLRGKHPTEDPAAIPLDAQGQIP---------------EMENLFEEATVKAVIKKANPQSAAGPSGLRYSHLQAA-LCDELVENLAAFATLVFS-SRVLPQVFWTLHTSANLSALGQKARPVACGDVLQRVIDAVFCRRYGKKLADYFQPWGQYGVAVSGGVEIMALTATLGFEDGYTILSYDGQNAFNSIYRHKFLPALAEIVLSMVPYASNLYAREPTKLLFELDGGGLEVVESARGVKQGCNLGPLCYSAGSLKILNEFRASPPVPGARAVSFIDDITVILPPELSLDMTAIGKVTEWLQKRLGVEGISLNRRKSQALLAYGVGPEQLTEEQR-------------GMSVVGVPVETEQFQRDFVQKAVNGEPAELVRALVPMEDAQASFQILRLSATSRLSYLLRTVPP 1227
+ GGITKAAS LISP P+PR++ TL LR HP EDP I I E + FE +K +KKANPQSA GP GLR+S+LQA + D E LA F+ VF LP FW LHTSANLSALG+K RP+A G VL+R+I FCR+Y +A+ F+ Q+G V GGVEI+A TA L + G TILS+DG+NA+NS+ R LPA+A +V Y N+YAR KLLF+++ G +EVV S RGV+QGCNLG + G L I+ EF PPVPG + + ++DD+ LPP L+ +M AI VT W+Q+RL +GI L+ KS+ L G+ LT +++ GM VVG+PV TE+FQR+FV K G+PAEL+ L ++D QAS+Q+LRLS RL +LLRT+ P
Sbjct: 51 ESGGITKAASALISPAPSPRNNDTLEHLRNLHPNEDPDDIATAWDSSIKVAGDRIKTHKIDSVAEADEPFEIKFIKQTVKKANPQSAPGPDGLRFSYLQAGGMSDSFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNNKPPVPGVKLIGYVDDLQAHLPPGLARNMQAISTVTNWIQERLSQKGIELSLPKSKVLFPEGLCMSSLTNDEQQQLTKIGLSVAEGGMPVVGIPVGTEEFQRNFVSKIARGDPAELILRLATLDDPQASYQLLRLSGVPRLFHLLRTIAP 489
BLAST of mRNA_H-elongata_contig127091.2012.1 vs. uniprot
Match: A0A6H5KQ62_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ62_9PHAE) HSP 1 Score: 300 bits (769), Expect = 1.740e-95 Identity = 168/347 (48.41%), Postives = 218/347 (62.82%), Query Frame = 1
Query: 1 QRGGITKAASTLISPPPAPRDSRTLATLRGKHPTEDPAAIP------LDAQGQ---------IPEMENLFEEATVKAVIKKANPQSAAGPSGLRYSHLQAA-LCDELVENLAAFATLVFS-SRVLPQVFWTLHTSANLSALGQKARPVACGDVLQRVIDAVFCRRYGKKLADYFQPWGQYGVAVSGGVEIMALTATLGFEDGYTILSYDGQNAFNSIYRHKFLPALAEIVLSMVPYASNLYAREPTKLLFELDGGGLEVVESARGVKQGCNLGPLCYSAGSLKILNEFRASPPVPGARAVSFIDDITVILPPELSLDMTAIGKVTEWLQKRLGVEGISLNRRKSQAL 990
+ GGITKAAS LISP P+PR++ TL LR HP EDP I + A G + E + FE +K +KKANPQSA GP GLR+S+LQA + D E LA F+ VF LP FW LHTSANLSALG+K RP+A G VL+R+I FCR+Y +A+ F+ Q+G V GGVEI+A TA L + G TILS+DG+NA+NS+ R LPA+A +V Y N+YAR KLLF+++ G +EVV S RGV+QGCNLG + G L I+ EF PPVPG + + ++DD+ LPP L+ +M AI VT W+Q+RL +GI L+ KS+ L
Sbjct: 51 ESGGITKAASALISPAPSPRNNDTLEHLRNLHPNEDPDDIATAWDSSIKAAGDRIETHKIDSVAEPDEPFEIKFIKQTVKKANPQSAPGPDGLRFSYLQAGGMSDFFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNNKPPVPGVKLIGYVDDLQAHLPPGLARNMQAISTVTNWIQERLSQKGIELSLPKSKVL 397
BLAST of mRNA_H-elongata_contig127091.2012.1 vs. uniprot
Match: A0A6H5KSY9_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSY9_9PHAE) HSP 1 Score: 283 bits (725), Expect = 1.430e-87 Identity = 159/337 (47.18%), Postives = 209/337 (62.02%), Query Frame = 1
Query: 259 LCDELVENLAAFATLVFS-SRVLPQVFWTLHTSANLSALGQKARPVACGDVLQRVIDAVFCRRYGKKLADYFQPWGQYGVAVSGGVEIMALTATLGFEDGYTILSYDGQNAFNSIYRHKFLPALAEIVLSMVPYASNLYAREPTKLLFELDGGGLEVVESARGVKQGCNLGPLCYSAGSLKILNEFRASPPVPGARAVSFIDDITVILPPELSLDMTAIGKVTEWLQKRLGVEGISLNRRKSQALLAYGVGPEQLT-EEQR------------GMSVVGVPVETEQFQRDFVQKAVNGEPAELVRALVPMEDAQASFQILRLSATSRLSYLLRTVPP 1227
+ D E LA F+ VF LP FW LHTSANLSALG+K RP+A G VL+R+I FCR+Y +A+ F+ Q+G V GGVEI+A TA L + G TILS+DG+NA+NS+ R LPA+A + Y N+YAR KLLF+++ G +EVV S RGV+QGCNLG + G L I+ EF PPVPGA+ + ++DD+ V LPP L+ ++ AI VT W+Q L +GI L+ KS L G+ LT +EQR GM++VGVPV TE FQR FV G PAEL+ L ++D Q S+Q+LR+S RL +LLRT+ P
Sbjct: 1 MSDYFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLAKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNNKPPVPGAKLIGYVDDLQVHLPPGLARNIQAIATVTNWIQDHLLQKGIELSLPKSNVLFPEGLFFSSLTNDEQRDLTKTGLSVAEGGMAIVGVPVGTECFQRSFVTNFARGIPAELIPRLSTLDDPQTSYQLLRMSGVPRLFHLLRTIAP 337
BLAST of mRNA_H-elongata_contig127091.2012.1 vs. uniprot
Match: A0A6H5K1H0_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H0_9PHAE) HSP 1 Score: 294 bits (752), Expect = 4.590e-86 Identity = 158/337 (46.88%), Postives = 213/337 (63.20%), Query Frame = 1
Query: 259 LCDELVENLAAFATLVFS-SRVLPQVFWTLHTSANLSALGQKARPVACGDVLQRVIDAVFCRRYGKKLADYFQPWGQYGVAVSGGVEIMALTATLGFEDGYTILSYDGQNAFNSIYRHKFLPALAEIVLSMVPYASNLYAREPTKLLFELDGGGLEVVESARGVKQGCNLGPLCYSAGSLKILNEFRASPPVPGARAVSFIDDITVILPPELSLDMTAIGKVTEWLQKRLGVEGISLNRRKSQALLAYGVGPEQLTEEQR-------------GMSVVGVPVETEQFQRDFVQKAVNGEPAELVRALVPMEDAQASFQILRLSATSRLSYLLRTVPP 1227
+ D E LA F+ VF LP W LHTSANLSALG+K RP+A G VL+R+I F R+Y +A+ F+ Q+G V GGVEI+A TA L + G TILS+DG+NA+NS+ R LPA+A + +V Y N+YAR KLLF+++ G +EVV S RGV+QGCNLG + G L I+ EF PPVPG + + ++DD+ LPP L+ +M AI VT W+Q+RL +GI L+ KS+ L G+ LT +++ GM VVG+PV TE+FQR+FV K G+PAEL+ L ++D QAS+Q+LRLS RL +LLRT+ P
Sbjct: 1 MSDSFTETLADFSFKVFYYGDELPDFLWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFYRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATLTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNNKPPVPGVKLIGYVDDLQAHLPPGLARNMQAISTVTNWIQERLSQKGIELSLPKSKVLFPEGLCMSSLTNDEQQQLTKIGLSVAEGGMPVVGIPVGTEEFQRNFVSKIARGDPAELILRLATLDDPQASYQLLRLSGVPRLFHLLRTIAP 337
BLAST of mRNA_H-elongata_contig127091.2012.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE) HSP 1 Score: 172 bits (437), Expect = 2.220e-43 Identity = 136/441 (30.84%), Postives = 208/441 (47.17%), Query Frame = 1
Query: 7 GGITKAASTLISPPPAPRDSRTLATLRGKHPTEDPAAIPLDAQGQIPEM--------------ENLFEEATVKAVIKKANPQSAAGPSGLRYSHLQAALCDELVEN------LAAFATLVFSSRVLPQVFWTLHTSANLSALGQKARPVACGDVLQRVIDAVFCRRYGKKLADYFQPWGQYGVAVSGGVEIMALTATLGFEDGYTILSYDGQNAFNSIYRHKFLPALAEIVLSMVPYASNLYAREPTKLLFELDGGGLEVVESARGVKQGCNLGPLCYSAGSLKILNEFRASPPVPGARAVSFIDDITVILPPELSLDMTAIGKVTEWLQKRLGVEGISLNRRKSQAL-------------LAYGVGPEQLTEEQRGMSVVGVPVETEQFQRDFVQKAVNGEPAELVRALVP-MEDAQASFQILRLSATSRLSYLLRTVPP 1227
GG+ AA L++ P +P + T L+ K P ED AA+ I E E F+ + VI + S AG G R+SHL++ ++ + + LV P FWTL ++L ALG+K RPV G +R+I A R++ KL + F+ Q+GVAV+GGVE +A+ A L + G I+ D NAFN+ R + A+ + +V Y + Y P ++E+D G +E GV+QG +GP +S + I+ + + G +++DDIT+ L L ++ +T+ L L GI +NR KS AL L GVG LT G++VVGVP+ T+ + R+F K + AE + ++P M D Q + I LS R +Y+ R + P
Sbjct: 472 GGVKDAARALLAEPRSPGNDETWERLKAKFPLEDSAAVEQAVADAIAESITEEENGSAPRWRPEEEFDPQVLIEVINSRSSNSGAGNDGQRFSHLKSITNTKIGREDFCGAMSSLWRRLVNDPNTFPPEFWTLWKQSSLIALGEKCRPVCIGMTWRRLIAAGTVRQWKPKLEEMFREANQFGVAVAGGVERVAMEAQLVHQTGNWIIQTDCSNAFNTGKRTAIMAQAAKSLPDLVGYIARCYDEIPATAVYEMDSGERRTLECTSGVQQGDGMGPPLFSLILIPIILKLQDKYKPLGVAFKAYMDDITLHLK---DLTEESVQAMTD-LVDELAEVGIVVNRAKSSALPPPGHMITDQQRRLLEGVG---LTVAGEGITVVGVPIGTDNYVREFAMKVITEGGAEKLARMLPLMSDRQVANLITSLSLIQRSAYIERGIDP 905
BLAST of mRNA_H-elongata_contig127091.2012.1 vs. uniprot
Match: A0A6H5KKQ2_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKQ2_9PHAE) HSP 1 Score: 171 bits (433), Expect = 2.810e-43 Identity = 132/437 (30.21%), Postives = 207/437 (47.37%), Query Frame = 1
Query: 7 GGITKAASTLISPPPAPRDSRTLATLRGKHPTEDPAAIPL------------DAQGQIPEM--ENLFEEATVKAVIKKANPQSAAGPSGLRYSHLQAALCDELVEN------LAAFATLVFSSRVLPQVFWTLHTSANLSALGQKARPVACGDVLQRVIDAVFCRRYGKKLADYFQPWGQYGVAVSGGVEIMALTATLGFEDGYTILSYDGQNAFNSIYRHKFLPALAEIVLSMVPYASNLYAREPTKLLFELDGGGLEVVESARGVKQGCNLGPLCYSAGSLKILNEFRASPPVPGARAVSFIDDITVILPPELSLDMTAIG-KVTEWLQKRLGVEGISLNRRKSQALLAYG----------VGPEQLTEEQRGMSVVGVPVETEQFQRDFVQKAVNGEPAE-LVRALVPMEDAQASFQILRLSATSRLSYLLRTV 1221
GG+ AA L++ P+P + T A L+ K P EDP + + +G P E F+ + V+ + + S AG G R+SHL++ + ++ + + L+ P FWTL ++L ALG+K RPV G +R+I A R + KL + F+ Q+GVAV+GGVE +A+ A L + G+ ++ D NAFN+ R + ++ V +V Y + Y P K ++ +D G +E GV+QG +GP + + I+ + RA G +++DDI++ D+TA +VT L L GI +NR KS AL G +G L + G++VVGVP+ T+ + D K + AE L R LV M D Q + + S T R Y+ R +
Sbjct: 301 GGVKDAARALLADQPSPGNDETWARLKAKFPHEDPVQVEQAIAEAIAASRTEEEEGSAPRWRPETEFDPQVLLQVVNRRSSNSGAGNDGPRFSHLKSIVNTKIGREEFSNAMSSLWRRLIKDPHAFPPEFWTLLKQSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAIDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQASKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISLHFK-----DITAENIQVTPDLVDELEAVGIIVNRGKSSALPPPGHDVTPTERRPLGDAGLPIAEEGITVVGVPIGTDAYVEDIAMKVITEGGAEKLARLLVRMPDKQVAHLVTSQSLTQRSGYIERGI 732
BLAST of mRNA_H-elongata_contig127091.2012.1 vs. uniprot
Match: A0A6H5JI32_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI32_9PHAE) HSP 1 Score: 168 bits (426), Expect = 3.860e-42 Identity = 129/436 (29.59%), Postives = 205/436 (47.02%), Query Frame = 1
Query: 7 GGITKAASTLISPPPAPRDSRTLATLRGKHPTEDPAAIPL------------DAQGQIPEM--ENLFEEATVKAVIKKANPQSAAGPSGLRYSHLQAALCDELVEN------LAAFATLVFSSRVLPQVFWTLHTSANLSALGQKARPVACGDVLQRVIDAVFCRRYGKKLADYFQPWGQYGVAVSGGVEIMALTATLGFEDGYTILSYDGQNAFNSIYRHKFLPALAEIVLSMVPYASNLYAREPTKLLFELDGGGLEVVESARGVKQGCNLGPLCYSAGSLKILNEFRASPPVPGARAVSFIDDITVILPPELSLDMTAIGKVTEWLQKRLGVEGISLNRRKSQALLAYG----------VGPEQLTEEQRGMSVVGVPVETEQFQRDFVQKAV-NGEPAELVRALVPMEDAQASFQILRLSATSRLSYLLRTV 1221
GG+ AA L++ P+P + T A L+ K P EDP + + +G P E F+ + VI + S AG G R+SHL++ + ++ + + L+ P FWTL ++L ALG+K RPV G +R+I A R + KL + F+ Q+GVAV+GGVE +A+ A L + G+ ++ D NAFN+ R + A+ V +V Y + Y P K ++ +D G +E GV+QG +GP + + I+ + RA G +++DDI++ + ++ I + + L+ GI +NR KS AL G +G L + G++VVGVP+ T+ + D K + G +L R LV M D Q + + S T R YL R +
Sbjct: 323 GGVKDAARALLADQPSPGNDETWARLKAKFPHEDPVQVEQAIAEAKAASRTEEEEGSAPRWRPETEFDPQVLLQVINSRSSNSGAGNDGQRFSHLKSIVNTKIGREEFSNAMSSLWRRLINDPNAFPPEFWTLWKQSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISLHFKNITAENIQVIPDLVDELE----AVGIIVNRGKSSALHPPGRDVAPAERRLLGDAGLPIAEEGITVVGVPIGTDAYVEDIAIKVIAEGGADKLARMLVRMPDKQVAHLVTSQSLTQRSGYLERGI 754 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig127091.2012.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
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The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig127091.2012.1 >prot_H-elongata_contig127091.2012.1 ID=prot_H-elongata_contig127091.2012.1|Name=mRNA_H-elongata_contig127091.2012.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=409bp QRGGITKAASTLISPPPAPRDSRTLATLRGKHPTEDPAAIPLDAQGQIPEback to top mRNA from alignment at H-elongata_contig127091:226..1575+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig127091.2012.1 ID=mRNA_H-elongata_contig127091.2012.1|Name=mRNA_H-elongata_contig127091.2012.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1350bp|location=Sequence derived from alignment at H-elongata_contig127091:226..1575+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig127091:226..1575+ >mRNA_H-elongata_contig127091.2012.1 ID=mRNA_H-elongata_contig127091.2012.1|Name=mRNA_H-elongata_contig127091.2012.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2454bp|location=Sequence derived from alignment at H-elongata_contig127091:226..1575+ (Himanthalia elongata Himel1 dioecious)back to top |