prot_H-elongata_contig127090.2011.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig127090.2011.1
Unique Nameprot_H-elongata_contig127090.2011.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length91
Homology
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BLAST of mRNA_H-elongata_contig127090.2011.1 vs. uniprot
Match: A0A6H5JJJ9_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJJ9_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 1.660e-26
Identity = 56/71 (78.87%), Postives = 61/71 (85.92%), Query Frame = 0 
Query:    1 RTATKTIPCLKGAKSNVNKHLRDVHGLVGSKGATRTENAQNRQGNIRAAMGACRTFGVGEMRVKELQAAKL 71
            RT+TKT PC KG+KSNVNKH R+VH LVG+KGA R ENAQN QGNIRAAMGA +TFGVG  RVKELQAAKL
Sbjct:  118 RTSTKTTPCPKGSKSNVNKHFREVHQLVGAKGAVRMENAQNHQGNIRAAMGASKTFGVGGKRVKELQAAKL 188
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BLAST of mRNA_H-elongata_contig127090.2011.1 vs. uniprot
Match: A0A6H5K4W3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4W3_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 2.770e-6
Identity = 27/70 (38.57%), Postives = 40/70 (57.14%), Query Frame = 0 
Query:    1 RTATKTIPCLKGAKSNVNKHLRDVHGLVGSKGATRTENAQNRQGNIRAAMGACRTFGVGEMRVKELQAAK 70
            R   K IPC +G +SNVN HL+ VHG+ G  G T+    Q+ Q +I  ++   +   +G+ RV+EL   K
Sbjct:  137 RRKKKVIPCRRGDRSNVNSHLKSVHGMQGKGGVTKQARRQSTQQSIGRSLTLSKNSQLGKNRVRELLCTK 206
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig127090.2011.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JJJ9_9PHAE1.660e-2678.87Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5K4W3_9PHAE2.770e-638.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig127090contigH-elongata_contig127090:726..1847 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig127090.2011.1mRNA_H-elongata_contig127090.2011.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig127090 726..1847 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig127090.2011.1 ID=prot_H-elongata_contig127090.2011.1|Name=mRNA_H-elongata_contig127090.2011.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=91bp
RTATKTIPCLKGAKSNVNKHLRDVHGLVGSKGATRTENAQNRQGNIRAAM
GACRTFGVGEMRVKELQAAKLSWRSCCRLPSSQPGTRSRR*
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