mRNA_H-elongata_contig127090.2011.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig127090.2011.1
Unique NamemRNA_H-elongata_contig127090.2011.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig127090.2011.1 vs. uniprot
Match: A0A6H5JJJ9_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJJ9_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 1.660e-26
Identity = 56/71 (78.87%), Postives = 61/71 (85.92%), Query Frame = 1 
Query:    1 RTATKTIPCLKGAKSNVNKHLRDVHGLVGSKGATRTENAQNRQGNIRAAMGACRTFGVGEMRVKELQAAKL 213
            RT+TKT PC KG+KSNVNKH R+VH LVG+KGA R ENAQN QGNIRAAMGA +TFGVG  RVKELQAAKL
Sbjct:  118 RTSTKTTPCPKGSKSNVNKHFREVHQLVGAKGAVRMENAQNHQGNIRAAMGASKTFGVGGKRVKELQAAKL 188
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BLAST of mRNA_H-elongata_contig127090.2011.1 vs. uniprot
Match: A0A6H5K4W3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4W3_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 2.770e-6
Identity = 27/70 (38.57%), Postives = 40/70 (57.14%), Query Frame = 1 
Query:    1 RTATKTIPCLKGAKSNVNKHLRDVHGLVGSKGATRTENAQNRQGNIRAAMGACRTFGVGEMRVKELQAAK 210
            R   K IPC +G +SNVN HL+ VHG+ G  G T+    Q+ Q +I  ++   +   +G+ RV+EL   K
Sbjct:  137 RRKKKVIPCRRGDRSNVNSHLKSVHGMQGKGGVTKQARRQSTQQSIGRSLTLSKNSQLGKNRVRELLCTK 206
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig127090.2011.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JJJ9_9PHAE1.660e-2678.87Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5K4W3_9PHAE2.770e-638.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig127090contigH-elongata_contig127090:726..1847 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size273
Cds size273
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929753.9948757-CDS-H-elongata_contig127090:725..8131622929753.9948757-CDS-H-elongata_contig127090:725..813Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127090 726..813 -
1691679144.833707-CDS-H-elongata_contig127090:725..8131691679144.833707-CDS-H-elongata_contig127090:725..813Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127090 726..813 -
1622929754.0098252-CDS-H-elongata_contig127090:1662..18471622929754.0098252-CDS-H-elongata_contig127090:1662..1847Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127090 1663..1847 -
1691679144.8425052-CDS-H-elongata_contig127090:1662..18471691679144.8425052-CDS-H-elongata_contig127090:1662..1847Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127090 1663..1847 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig127090.2011.1prot_H-elongata_contig127090.2011.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig127090 726..1847 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig127090.2011.1

>prot_H-elongata_contig127090.2011.1 ID=prot_H-elongata_contig127090.2011.1|Name=mRNA_H-elongata_contig127090.2011.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=91bp
RTATKTIPCLKGAKSNVNKHLRDVHGLVGSKGATRTENAQNRQGNIRAAM
GACRTFGVGEMRVKELQAAKLSWRSCCRLPSSQPGTRSRR*
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mRNA from alignment at H-elongata_contig127090:726..1847-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig127090.2011.1 ID=mRNA_H-elongata_contig127090.2011.1|Name=mRNA_H-elongata_contig127090.2011.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1122bp|location=Sequence derived from alignment at H-elongata_contig127090:726..1847- (Himanthalia elongata Himel1 dioecious)
CGGACAGCCACGAAGACCATTCCTTGCTTGAAGGGGGCAAAGAGCAACGT
CAACAAACACCTCCGCGACGTTCACGGGTTGGTGGGCTCCAAGGGGGCGA
CGAGAACCGAGAACGCGCAGAATAGACAGGGAAATATCAGAGCAGCTATG
GGAGCGTGCCGGACCTTCGGCGTTGGCGAAATGAGGTGATTTGTATTTTT
TGTCTTTTAGAGTGAGAGCGTTTTTTTTTCAGAGAGCGACACCGAGTTGG
TGGTGTGGGTTCTGTTTTTTTTTCTTTTTTTCGTCCCATCTCTGGCGCCG
CCTGCTTACTCCTCTTCGGTGCACACTACACGGTGTGGCGTATGTGTACT
TACACTTTTCAGGGTACTGTTCACACAGTAGGGGGTACCCACGCCGGGTT
TTTTTCTTCTTTTTATCTTCTTTTGTCCCCACCACCTACCTCCTGCGGTG
CCTGTCTGAGATATTTTTATCGCGAGAAGGGTACAGCAATCCCTTCCCTC
GCGACAGTTAAGTCGATGTCGTTGTGATGTAGATGCAAACAAGAGACTGC
TGTACCTATCTTGATCTTTATTTTTATCTTTGCTGAAATTCCTGGTAGAC
CCGGTGCAAAAGAAGTACTGATGTGTGTGGTGGGTTGTGGAGAACACACG
AAATTACTACTGAAAAAGTAATAGTCTAGTGTAGTATATAAATCTGGTAG
AGGACCGGTACACAAACAAGAGGATCTGTGTGTATATGTGTGTATGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTTTTGTATTGTGCATACTTTGCAC
CATCCCCCACCCGTTTTGGCTGATTTTTCAGGTTGCGCGCCAGCGCACAA
GGAAAGTCCCAACCAAACGTGTGCGTTTGATTTTTTTTTTCTCGAGGAAG
GAAGCAGAGCTAGCCTCAAGCCTTAGCCTTTGACAGATTATGGCTCCTCT
TATGTCCCGCGCGCCCTCTTACCTCTCCCTCCCCTCGGTGTGGGTGTGTT
CGCCTTTTCAACGGCTACTCTCTTTGTTTTCCAGGGTTAAGGAGCTGCAG
GCGGCGAAGCTGTCGTGGAGAAGCTGCTGCCGCTTACCTTCTTCTCAACC
GGGGACACGTTCACGGAGATGA
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Coding sequence (CDS) from alignment at H-elongata_contig127090:726..1847-

>mRNA_H-elongata_contig127090.2011.1 ID=mRNA_H-elongata_contig127090.2011.1|Name=mRNA_H-elongata_contig127090.2011.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=546bp|location=Sequence derived from alignment at H-elongata_contig127090:726..1847- (Himanthalia elongata Himel1 dioecious)
CGGACAGCCACGAAGACCATTCCTTGCTTGAAGGGGGCAAAGAGCAACGT
CAACAAACACCTCCGCGACGTTCACGGGTTGGTGGGCTCCAAGGGGGCGA
CGAGAACCGAGAACGCGCAGAATAGACAGGGAAATATCAGAGCAGCTATG
GGAGCGTGCCGGACCTTCGGCGTTGGCGAAATGAGCGGACAGCCACGAAG
ACCATTCCTTGCTTGAAGGGGGCAAAGAGCAACGTCAACAAACACCTCCG
CGACGTTCACGGGTTGGTGGGCTCCAAGGGGGCGACGAGAACCGAGAACG
CGCAGAATAGACAGGGAAATATCAGAGCAGCTATGGGAGCGTGCCGGACC
TTCGGCGTTGGCGAAATGAGGGTTAAGGAGCTGCAGGCGGCGAAGCTGTC
GTGGAGAAGCTGCTGCCGCTTACCTTCTTCTCAACCGGGGACACGTTCAC
GGAGATGAGGTTAAGGAGCTGCAGGCGGCGAAGCTGTCGTGGAGAAGCTG
CTGCCGCTTACCTTCTTCTCAACCGGGGACACGTTCACGGAGATGA
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