mRNA_H-elongata_contig102280.201.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig102280.201.1
Unique NamemRNA_H-elongata_contig102280.201.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig102280.201.1 vs. uniprot
Match: D7G280_ECTSI (TAFII55_N domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G280_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 7.400e-21
Identity = 56/85 (65.88%), Postives = 59/85 (69.41%), Query Frame = 1 
Query:  265 VTFEHEEIVEFEPWMADPDIATLGRLEGITIEITGPTEKSDADDAG--------RGSLSHPAPLPPPRLFGSELLYEHPEILLAV 495
            VTFEHEEIV FEPWMADP  A LGRLEGIT+EITG TEK +A  A          GS +       PRLFGSELLYEHPEILLAV
Sbjct:  229 VTFEHEEIVPFEPWMADPKFAALGRLEGITLEITGTTEKPEAGAAXXXXXXXXXEGSTA-------PRLFGSELLYEHPEILLAV 306
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig102280.201.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G280_ECTSI7.400e-2165.88TAFII55_N domain-containing protein n=2 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig102280contigH-elongata_contig102280:235..2119 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.5
Seed ortholog evalue1.4e-18
Seed eggNOG ortholog2880.D7G280
Preferred nameTAF7
KEGG koko:K03132,ko:K19721
KEGG Pathwayko03022,ko04974,map03022,map04974
GOsGO:0000003,GO:0000122,GO:0000123,GO:0000296,GO:0000428,GO:0001067,GO:0001932,GO:0001933,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003700,GO:0003712,GO:0003713,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0005737,GO:0005794,GO:0006139,GO:0006351,GO:0006352,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006469,GO:0006725,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006928,GO:0007154,GO:0007165,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0008134,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009719,GO:0009725,GO:0009755,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009966,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010563,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010639,GO:0010646,GO:0012505,GO:0014070,GO:0015696,GO:0015846,GO:0015893,GO:0016043,GO:0016070,GO:0016591,GO:0018130,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0019899,GO:0019953,GO:0022412,GO:0022414,GO:0022607,GO:0023051,GO:0023052,GO:0030154,GO:0030234,GO:0030317,GO:0030518,GO:0030520,GO:0030522,GO:0030880,GO:0031056,GO:0031057,GO:0031248,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031399,GO:0031400,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032504,GO:0032774,GO:0032870,GO:0032991,GO:0033043,GO:0033044,GO:0033276,GO:0033673,GO:0033993,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034708,GO:0035034,GO:0035035,GO:0035065,GO:0035067,GO:0035097,GO:0035257,GO:0040011,GO:0042221,GO:0042325,GO:0042326,GO:0042493,GO:0042809,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043254,GO:0043401,GO:0043549,GO:0043933,GO:0044085,GO:0044087,GO:0044092,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044665,GO:0044703,GO:0044798,GO:0045859,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045936,GO:0045944,GO:0046483,GO:0046966,GO:0046982,GO:0046983,GO:0048232,GO:0048468,GO:0048515,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048545,GO:0048583,GO:0048609,GO:0048856,GO:0048869,GO:0048870,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051123,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051254,GO:0051338,GO:0051348,GO:0051427,GO:0051674,GO:0051704,GO:0051716,GO:0055029,GO:0060255,GO:0060260,GO:0061695,GO:0065003,GO:0065004,GO:0065007,GO:0065009,GO:0070013,GO:0070461,GO:0070887,GO:0070897,GO:0071310,GO:0071339,GO:0071383,GO:0071396,GO:0071407,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0090575,GO:0097159,GO:0097659,GO:0097722,GO:0098772,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901796,GO:1901983,GO:1901984,GO:1902275,GO:1902493,GO:1902494,GO:1902531,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1905268,GO:1990234,GO:2000112,GO:2000113,GO:2000142,GO:2000756,GO:2000757,GO:2001141,GO:2001251
EggNOG free text desc.chromosome segregation
EggNOG OGsCOG5414@1,KOG4011@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00536,ko03021,ko03036
Hectar predicted targeting categoryother localisation
Exons3
Model size927
Cds size927
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig102280.201.1prot_H-elongata_contig102280.201.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig102280 235..2119 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929561.2427588-CDS-H-elongata_contig102280:234..6661622929561.2427588-CDS-H-elongata_contig102280:234..666Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102280 235..666 -
1691679070.8147407-CDS-H-elongata_contig102280:234..6661691679070.8147407-CDS-H-elongata_contig102280:234..666Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102280 235..666 -
1622929561.2651885-CDS-H-elongata_contig102280:1036..11711622929561.2651885-CDS-H-elongata_contig102280:1036..1171Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102280 1037..1171 -
1691679070.8263867-CDS-H-elongata_contig102280:1036..11711691679070.8263867-CDS-H-elongata_contig102280:1036..1171Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102280 1037..1171 -
1622929561.2814188-CDS-H-elongata_contig102280:1759..21191622929561.2814188-CDS-H-elongata_contig102280:1759..2119Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102280 1760..2119 -
1691679070.837646-CDS-H-elongata_contig102280:1759..21191691679070.837646-CDS-H-elongata_contig102280:1759..2119Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102280 1760..2119 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig102280.201.1

>prot_H-elongata_contig102280.201.1 ID=prot_H-elongata_contig102280.201.1|Name=mRNA_H-elongata_contig102280.201.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=309bp
QVIRVESQVLKMQHDGSNAEGGDKKKLAANGISSAVAVASSGIGGSSRSS
RPGGGDSAKGRNGGGSGGGGGVGGSGSSGGNGGGGGEKVTFEHEEIVEFE
PWMADPDIATLGRLEGITIEITGPTEKSDADDAGRGSLSHPAPLPPPRLF
GSELLYEHPEILLAVADLVKDSGARTPEQKEKVEGGATTSASFAIPTGAT
AVQVTREVPKSADKQRRPETALGEAQRKMQKKEKPRQDFQPKHELQEQKM
LQQQLPKQIPQQLPQQQLPQQQLQQPQQPPLQQPPSQQPQQPQQLLSVEE
NMVRVARF*
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mRNA from alignment at H-elongata_contig102280:235..2119-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig102280.201.1 ID=mRNA_H-elongata_contig102280.201.1|Name=mRNA_H-elongata_contig102280.201.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1885bp|location=Sequence derived from alignment at H-elongata_contig102280:235..2119- (Himanthalia elongata Himel1 dioecious)
CAGGTGATTCGCGTCGAGAGCCAGGTTCTGAAGATGCAACACGATGGGTC
TAACGCAGAGGGCGGCGACAAGAAGAAATTAGCGGCGAACGGCATCTCCT
CTGCCGTCGCCGTTGCCTCCAGCGGGATTGGGGGATCTTCAAGGAGTTCC
CGCCCCGGGGGCGGCGATAGCGCCAAGGGGCGGAACGGAGGAGGTAGCGG
CGGAGGAGGTGGGGTGGGAGGAAGCGGTAGTAGCGGCGGAAACGGAGGCG
GGGGAGGAGAGAAGGTGACGTTCGAGCACGAGGAGATCGTGGAGTTCGAG
CCGTGGATGGCGGACCCCGATATTGCGACCCTCGGGCGATTGGAAGGGAT
TACAATCGAAGTAAGAGAGAGAGGAAGTAAAGACGAAAGAAAAATAAATC
GAAGTGAAGACGAAGGAGGGATATCTGGATGGATGGATGGATGGTAGCTC
TAGATGGGATTTTCCGTAGTGAAAAAAGAAGAGTCGGTCGGTGGCTTCTT
TGGAGAGGAGGGTTGGCTTTTCAGGGAGCGAACGGGGATAATCGAGCTAT
CATCGACGAAACGTCTCTTTTTTTTGTTGGTTGGTGGGGGGAGGGAGGAC
GGCTGACAACGGTTGGACAGAGTATCGGTCGACCTCGACAATATATTTCT
TGCCCAAACATCGCGGAAGAGGCGTGTATCTTTGTTTCGATGCGGTGCCT
TGATCGGATTGTGCGACTGGCTAGCTATACAAGTTCTCTCGACCATCGGC
GGGGAAAAGTGTCGTGCGCGCGATGGGGTTTTTTTTCTTATTTTTTTTTC
GATCTCGAGAGATATTATAGGAAAAAAAATAGGAACAACCCAAATAAGCA
CACACACACACACACACACACACACGTACTATTATAGCATTATTTTCTCC
CCTCCCCCCTCTCTCTTCTGTCTAATTTTGTTTTATTCCACTTGGTAGAT
CACCGGGCCGACCGAAAAATCAGACGCGGACGACGCAGGTCGTGGTAGCT
TGAGCCACCCTGCGCCGCTGCCCCCACCACGTTTGTTCGGGTCGGAACTT
CTCTACGAGCACCCGGAGATATTGCTGGCTGTGGTGAGAGATTCTTTCTC
CCCCTTAATACTCCACGTGGAAAGCGGTGGCATTGCCAACAGGAGGACGT
GGAGTGGGGTTTAGGTGGGGGGACAGGGGACAGGGAGTAAGCAGGGGGGC
GACTAACAAAGATGCGCCAAGTACTGCATTTTGTTTTTGTTCTTTTTTAC
TCTCCGCGAAACTGTCGTATGTTCGGATGTCCCGAAGGCAGGCTTTTTGG
TGGGAGTGGTGTAAGTGCGTTTGCTGCAAAGCGTACAACCTATCCTAGTG
TATGAGGGCCTTGTGATTTCCGCCGCGAGACGAGATGCAGGCCCCGAGCC
GCGCACCGGCTGCATCCCAGCTGCTCTTTCCGTTCCGTGCCTTGGTGGCG
CAGGCAGACTTGGTCAAAGACTCCGGTGCCCGAACCCCCGAACAGAAGGA
GAAGGTGGAAGGTGGAGCGACCACCTCTGCCTCTTTCGCGATACCGACCG
GCGCTACCGCGGTACAAGTGACGCGGGAAGTGCCGAAATCGGCTGACAAG
CAAAGGAGGCCGGAGACGGCTCTTGGCGAAGCGCAGCGAAAGATGCAGAA
GAAGGAGAAGCCGCGACAGGATTTCCAGCCAAAGCACGAGCTTCAAGAAC
AGAAAATGCTGCAGCAGCAACTACCGAAGCAAATACCACAGCAACTGCCA
CAGCAGCAACTGCCTCAGCAGCAGCTGCAGCAGCCGCAACAACCGCCGTT
GCAACAGCCGCCGTCGCAGCAGCCCCAGCAGCCGCAACAACTGTTGAGCG
TGGAAGAAAATATGGTAAGAGTTGCGCGCTTTTAA
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Coding sequence (CDS) from alignment at H-elongata_contig102280:235..2119-

>mRNA_H-elongata_contig102280.201.1 ID=mRNA_H-elongata_contig102280.201.1|Name=mRNA_H-elongata_contig102280.201.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1854bp|location=Sequence derived from alignment at H-elongata_contig102280:235..2119- (Himanthalia elongata Himel1 dioecious)
CAGGTGATTCGCGTCGAGAGCCAGGTTCTGAAGATGCAACACGATGGGTC
TAACGCAGAGGGCGGCGACAAGAAGAAATTAGCGGCGAACGGCATCTCCT
CTGCCGTCGCCGTTGCCTCCAGCGGGATTGGGGGATCTTCAAGGAGTTCC
CGCCCCGGGGGCGGCGATAGCGCCAAGGGGCGGAACGGAGGAGGTAGCGG
CGGAGGAGGTGGGGTGGGAGGAAGCGGTAGTAGCGGCGGAAACGGAGGCG
GGGGAGGAGAGAAGGTGACGTTCGAGCACGAGGAGATCGTGGAGTTCGAG
CCGTGGATGGCGGACCCCGATATTGCGACCCTCGGGCGATTGGAAGGGAT
TACAATCGAACAGGTGATTCGCGTCGAGAGCCAGGTTCTGAAGATGCAAC
ACGATGGGTCTAACGCAGAGGGCGGCGACAAGAAGAAATTAGCGGCGAAC
GGCATCTCCTCTGCCGTCGCCGTTGCCTCCAGCGGGATTGGGGGATCTTC
AAGGAGTTCCCGCCCCGGGGGCGGCGATAGCGCCAAGGGGCGGAACGGAG
GAGGTAGCGGCGGAGGAGGTGGGGTGGGAGGAAGCGGTAGTAGCGGCGGA
AACGGAGGCGGGGGAGGAGAGAAGGTGACGTTCGAGCACGAGGAGATCGT
GGAGTTCGAGCCGTGGATGGCGGACCCCGATATTGCGACCCTCGGGCGAT
TGGAAGGGATTACAATCGAAATCACCGGGCCGACCGAAAAATCAGACGCG
GACGACGCAGGTCGTGGTAGCTTGAGCCACCCTGCGCCGCTGCCCCCACC
ACGTTTGTTCGGGTCGGAACTTCTCTACGAGCACCCGGAGATATTGCTGG
CTGTGATCACCGGGCCGACCGAAAAATCAGACGCGGACGACGCAGGTCGT
GGTAGCTTGAGCCACCCTGCGCCGCTGCCCCCACCACGTTTGTTCGGGTC
GGAACTTCTCTACGAGCACCCGGAGATATTGCTGGCTGTGGCAGACTTGG
TCAAAGACTCCGGTGCCCGAACCCCCGAACAGAAGGAGAAGGTGGAAGGT
GGAGCGACCACCTCTGCCTCTTTCGCGATACCGACCGGCGCTACCGCGGT
ACAAGTGACGCGGGAAGTGCCGAAATCGGCTGACAAGCAAAGGAGGCCGG
AGACGGCTCTTGGCGAAGCGCAGCGAAAGATGCAGAAGAAGGAGAAGCCG
CGACAGGATTTCCAGCCAAAGCACGAGCTTCAAGAACAGAAAATGCTGCA
GCAGCAACTACCGAAGCAAATACCACAGCAACTGCCACAGCAGCAACTGC
CTCAGCAGCAGCTGCAGCAGCCGCAACAACCGCCGTTGCAACAGCCGCCG
TCGCAGCAGCCCCAGCAGCCGCAACAACTGTTGAGCGTGGAAGAAAATAT
GGTAAGAGTTGCGCGCTTTTAAGCAGACTTGGTCAAAGACTCCGGTGCCC
GAACCCCCGAACAGAAGGAGAAGGTGGAAGGTGGAGCGACCACCTCTGCC
TCTTTCGCGATACCGACCGGCGCTACCGCGGTACAAGTGACGCGGGAAGT
GCCGAAATCGGCTGACAAGCAAAGGAGGCCGGAGACGGCTCTTGGCGAAG
CGCAGCGAAAGATGCAGAAGAAGGAGAAGCCGCGACAGGATTTCCAGCCA
AAGCACGAGCTTCAAGAACAGAAAATGCTGCAGCAGCAACTACCGAAGCA
AATACCACAGCAACTGCCACAGCAGCAACTGCCTCAGCAGCAGCTGCAGC
AGCCGCAACAACCGCCGTTGCAACAGCCGCCGTCGCAGCAGCCCCAGCAG
CCGCAACAACTGTTGAGCGTGGAAGAAAATATGGTAAGAGTTGCGCGCTT
TTAA
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