prot_H-elongata_contig102280.201.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig102280.201.1
Unique Nameprot_H-elongata_contig102280.201.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length309
Homology
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BLAST of mRNA_H-elongata_contig102280.201.1 vs. uniprot
Match: D7G280_ECTSI (TAFII55_N domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G280_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 7.400e-21
Identity = 56/85 (65.88%), Postives = 59/85 (69.41%), Query Frame = 0 
Query:   89 VTFEHEEIVEFEPWMADPDIATLGRLEGITIEITGPTEKSDADDAG--------RGSLSHPAPLPPPRLFGSELLYEHPEILLAV 165
            VTFEHEEIV FEPWMADP  A LGRLEGIT+EITG TEK +A  A          GS +       PRLFGSELLYEHPEILLAV
Sbjct:  229 VTFEHEEIVPFEPWMADPKFAALGRLEGITLEITGTTEKPEAGAAXXXXXXXXXEGSTA-------PRLFGSELLYEHPEILLAV 306
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig102280.201.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G280_ECTSI7.400e-2165.88TAFII55_N domain-containing protein n=2 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig102280contigH-elongata_contig102280:235..2119 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig102280.201.1mRNA_H-elongata_contig102280.201.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig102280 235..2119 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig102280.201.1 ID=prot_H-elongata_contig102280.201.1|Name=mRNA_H-elongata_contig102280.201.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=309bp
QVIRVESQVLKMQHDGSNAEGGDKKKLAANGISSAVAVASSGIGGSSRSS
RPGGGDSAKGRNGGGSGGGGGVGGSGSSGGNGGGGGEKVTFEHEEIVEFE
PWMADPDIATLGRLEGITIEITGPTEKSDADDAGRGSLSHPAPLPPPRLF
GSELLYEHPEILLAVADLVKDSGARTPEQKEKVEGGATTSASFAIPTGAT
AVQVTREVPKSADKQRRPETALGEAQRKMQKKEKPRQDFQPKHELQEQKM
LQQQLPKQIPQQLPQQQLPQQQLQQPQQPPLQQPPSQQPQQPQQLLSVEE
NMVRVARF*
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