mRNA_H-elongata_contig126994.2003.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig126994.2003.1
Unique NamemRNA_H-elongata_contig126994.2003.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig126994.2003.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig126994contigH-elongata_contig126994:912..1391 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size480
Cds size438
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929753.4410508-UTR-H-elongata_contig126994:911..9531622929753.4410508-UTR-H-elongata_contig126994:911..953Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig126994 912..953 +
1691679144.5177362-UTR-H-elongata_contig126994:911..9531691679144.5177362-UTR-H-elongata_contig126994:911..953Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig126994 912..953 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929753.4656067-CDS-H-elongata_contig126994:953..13911622929753.4656067-CDS-H-elongata_contig126994:953..1391Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig126994 954..1391 +
1691679144.5270329-CDS-H-elongata_contig126994:953..13911691679144.5270329-CDS-H-elongata_contig126994:953..1391Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig126994 954..1391 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig126994.2003.1prot_H-elongata_contig126994.2003.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig126994 954..1391 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig126994.2003.1

>prot_H-elongata_contig126994.2003.1 ID=prot_H-elongata_contig126994.2003.1|Name=mRNA_H-elongata_contig126994.2003.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=146bp
MEDLGAPPSPAEGRPLAEPRSNATAAGVFKMNLGGTHVLLASAAIVIISA
LTFGLIGTGVVRHFVLLVCYGVASLSLGAFLVRPKTPDSLLESTAVSSTA
AASILDRNSAVGVDAVLRSGIPNVPEAGRQGATIASASTTTSPLDW
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mRNA from alignment at H-elongata_contig126994:912..1391+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig126994.2003.1 ID=mRNA_H-elongata_contig126994.2003.1|Name=mRNA_H-elongata_contig126994.2003.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=480bp|location=Sequence derived from alignment at H-elongata_contig126994:912..1391+ (Himanthalia elongata Himel1 dioecious)
AGAAGTTCTAAAAAATCGGTCGGATCGAGATAGAACGGAAATATGGAGGA
TCTAGGAGCTCCGCCGTCTCCAGCCGAGGGTAGGCCCCTGGCCGAGCCAC
GCAGCAACGCCACCGCTGCCGGCGTTTTCAAGATGAATCTAGGTGGAACT
CATGTGCTTTTGGCGTCTGCAGCTATCGTGATAATCTCGGCTCTCACTTT
TGGACTCATCGGCACTGGGGTTGTTAGGCACTTCGTGCTGCTGGTGTGCT
ATGGAGTAGCGTCGCTATCGCTTGGAGCGTTCCTCGTGCGCCCAAAGACC
CCGGATAGCTTGCTTGAGTCCACCGCTGTATCTTCCACTGCCGCCGCTTC
AATTCTTGATAGGAACTCGGCAGTTGGTGTTGATGCCGTACTGCGATCAG
GGATACCTAACGTCCCTGAAGCCGGTAGACAAGGTGCAACCATCGCATCG
GCCTCAACAACAACCTCCCCACTTGACTGG
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Coding sequence (CDS) from alignment at H-elongata_contig126994:912..1391+

>mRNA_H-elongata_contig126994.2003.1 ID=mRNA_H-elongata_contig126994.2003.1|Name=mRNA_H-elongata_contig126994.2003.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=876bp|location=Sequence derived from alignment at H-elongata_contig126994:912..1391+ (Himanthalia elongata Himel1 dioecious)
ATGGAGGATCTAGGAGCTCCGCCGTCTCCAGCCGAGGGTAGGCCCCTGGC
CGAGCCACGCAGCAACGCCACCGCTGCCGGCGTTTTCAAGATGAATCTAG
GTGGAACTCATGTGCTTTTGGCGTCTGCAGCTATCGTGATAATCTCGGCT
CTCACTTTTGGACTCATCGGCACTGGGGTTGTTAGGCACTTCGTGCTGCT
GGTGTGCTATGGAGTAGCGTCGCTATCGCTTGGAGCGTTCCTCGTGCGCC
CAAAGACCCCGGATAGCTTGCTTGAGTCCACCGCTGTATCTTCCACTGCC
GCCGCTTCAATTCTTGATAGGAACTCGGCAGTTGGTGTTGATGCCGTACT
GCGATCAGGGATACCTAACGTCCCTGAAGCCGGTAGACAAGGTGCAACCA
TCGCATCGGCCTCAACAACAACCTCCCCACTTGACTGGATGGAGGATCTA
GGAGCTCCGCCGTCTCCAGCCGAGGGTAGGCCCCTGGCCGAGCCACGCAG
CAACGCCACCGCTGCCGGCGTTTTCAAGATGAATCTAGGTGGAACTCATG
TGCTTTTGGCGTCTGCAGCTATCGTGATAATCTCGGCTCTCACTTTTGGA
CTCATCGGCACTGGGGTTGTTAGGCACTTCGTGCTGCTGGTGTGCTATGG
AGTAGCGTCGCTATCGCTTGGAGCGTTCCTCGTGCGCCCAAAGACCCCGG
ATAGCTTGCTTGAGTCCACCGCTGTATCTTCCACTGCCGCCGCTTCAATT
CTTGATAGGAACTCGGCAGTTGGTGTTGATGCCGTACTGCGATCAGGGAT
ACCTAACGTCCCTGAAGCCGGTAGACAAGGTGCAACCATCGCATCGGCCT
CAACAACAACCTCCCCACTTGACTGG
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