mRNA_H-elongata_contig126993.2002.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig126993.2002.1
Unique NamemRNA_H-elongata_contig126993.2002.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig126993.2002.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig126993contigH-elongata_contig126993:745..1260 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size209
Cds size195
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig126993.2002.1prot_H-elongata_contig126993.2002.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig126993 745..1247 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929753.3798423-CDS-H-elongata_contig126993:744..8601622929753.3798423-CDS-H-elongata_contig126993:744..860Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig126993 745..860 -
1691679144.4834473-CDS-H-elongata_contig126993:744..8601691679144.4834473-CDS-H-elongata_contig126993:744..860Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig126993 745..860 -
1622929753.390208-CDS-H-elongata_contig126993:1168..12471622929753.390208-CDS-H-elongata_contig126993:1168..1247Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig126993 1169..1247 -
1691679144.4925888-CDS-H-elongata_contig126993:1168..12471691679144.4925888-CDS-H-elongata_contig126993:1168..1247Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig126993 1169..1247 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929753.4017143-UTR-H-elongata_contig126993:1247..12601622929753.4017143-UTR-H-elongata_contig126993:1247..1260Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig126993 1248..1260 -
1691679144.504336-UTR-H-elongata_contig126993:1247..12601691679144.504336-UTR-H-elongata_contig126993:1247..1260Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig126993 1248..1260 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig126993.2002.1

>prot_H-elongata_contig126993.2002.1 ID=prot_H-elongata_contig126993.2002.1|Name=mRNA_H-elongata_contig126993.2002.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=65bp
MERLSERYDIFNPGSSVLPSAALEHSGSMRRYTPKDISGFEDALQGALRK
ANAELHEARTKTRLE
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mRNA from alignment at H-elongata_contig126993:745..1260-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig126993.2002.1 ID=mRNA_H-elongata_contig126993.2002.1|Name=mRNA_H-elongata_contig126993.2002.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=516bp|location=Sequence derived from alignment at H-elongata_contig126993:745..1260- (Himanthalia elongata Himel1 dioecious)
GCGCGATGGTCTGATGGAGAGGCTCTCTGAGAGGTACGACATCTTCAATC
CCGGGTCTTCTGTCCTACCCTCCGCCGCTTTGGAGCATTCAGGCAAGCAA
GACCTTCTTCGTCTCTCTGCTCCGCGACGGCTCCTGGTGGAATGCCAATA
GTTTGTAGTCTTTCTTTCCTCTTGCGGGTCGAGGAGCGATGGCGTGCTTT
ACATCCTCGATCTTGTTCCTTGAACCGCGCTTTGCGTGTGTGGGGTGCGT
TACGGGTGGGAGCGTTCGAGGAGTAGCTGTGTTATTTGTTTTGTACTACA
GCTATCGCGTTGGCGGGAAGATTTGTTGCGTTATTAACGGCGGTGGCGCC
ACCTATCAACGAATCAGAATCCCCGATGACGGATGTTGACACCTCGACAG
GGTCGATGAGGCGTTATACCCCGAAGGACATTTCCGGCTTCGAAGATGCA
CTCCAGGGAGCCCTCCGGAAGGCCAACGCCGAGCTACACGAGGCTCGAAC
GAAGACAAGGCTTGAG
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Coding sequence (CDS) from alignment at H-elongata_contig126993:745..1260-

>mRNA_H-elongata_contig126993.2002.1 ID=mRNA_H-elongata_contig126993.2002.1|Name=mRNA_H-elongata_contig126993.2002.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=390bp|location=Sequence derived from alignment at H-elongata_contig126993:745..1260- (Himanthalia elongata Himel1 dioecious)
ATGGAGAGGCTCTCTGAGAGGTACGACATCTTCAATCCCGGGTCTTCTGT
CCTACCCTCCGCCGCTTTGGAGCATTCAGATGGAGAGGCTCTCTGAGAGG
TACGACATCTTCAATCCCGGGTCTTCTGTCCTACCCTCCGCCGCTTTGGA
GCATTCAGGGTCGATGAGGCGTTATACCCCGAAGGACATTTCCGGCTTCG
AAGATGCACTCCAGGGAGCCCTCCGGAAGGCCAACGCCGAGCTACACGAG
GCTCGAACGAAGACAAGGCTTGAGGGTCGATGAGGCGTTATACCCCGAAG
GACATTTCCGGCTTCGAAGATGCACTCCAGGGAGCCCTCCGGAAGGCCAA
CGCCGAGCTACACGAGGCTCGAACGAAGACAAGGCTTGAG
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