mRNA_H-elongata_contig12695.1999.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig12695.1999.1 vs. uniprot
Match: D7FQG5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQG5_ECTSI) HSP 1 Score: 661 bits (1706), Expect = 2.090e-227 Identity = 345/443 (77.88%), Postives = 377/443 (85.10%), Query Frame = 1
Query: 1 MQRIPPALLASYRALYVVLRGCAADAEEEINRDILRTVRGVTGLLLDFSS-DQRGELAGSINRVLNALAHVDNMSYCQGQNYVVDVMMKAGLPERETFCLFLYLLRQGHLHGIYRKEVPMLVGYMDKFEEQLRLRLPKLAAHFEAEHYPPPLYALEWMTTLFGLAAQPLISLVALDLVLAGARNPVLRLCVSLLGGMEEDLLKLDQEGLLEEFRSRAVAVDAEEVIVRALIDGGR---------GGRGAGAKRSRAG--ADR-HLGWSTGPDYLLVLRSRYCETVGLVELREEARKTLLVHHTALQ----AITRMLGWDCLRACWLKSCLAARSDHDRHLLASEALRFVIANGGHAKAAAFMLGVGGADANGVDPHLLTPLHLAGLYNRPDVVRVLLMCGASPRLTGGVTRVAAAREGKLWSPLEMAEEACTEGGELDEGVSV 1278
MQR+PPA+LASYRALYVVLRG AA AE+EINRDI+RTVRG TGLLLD SS D R + AGSINRVLNALAHVDNM YCQGQNYVVDVMMKAGLPERETFCLFLYLLRQGH HG+YRKEV ML GYMDK E QLR RLP LAAHFEAEHYPPPLYALEW+TT FGLAAQPL+SLVALDL LAGARNPVLRLCVSLLG ME+ LL LDQEGLL++FRSRAV VDAE VIVRAL DGG+ GG G AKRS G AD LGWSTGPDYLLVLRSR+C+T+GLVELREEA+ L+V H++LQ A+TR LGWD LR CWL++CLAARSDH+RH LAS+ALRFVIANGGH KAA+FMLGVGGADAN VD LL+PLHL ++NRPD+ RVLLMCGASPRL GGVTR AAAR GKLWSPLEMAEEACTEGG LD+G ++
Sbjct: 1 MQRVPPAVLASYRALYVVLRGHAAAAEDEINRDIMRTVRGTTGLLLDLSSEDSRSDFAGSINRVLNALAHVDNMGYCQGQNYVVDVMMKAGLPERETFCLFLYLLRQGHFHGMYRKEVAMLAGYMDKLEGQLRGRLPDLAAHFEAEHYPPPLYALEWITTFFGLAAQPLVSLVALDLFLAGARNPVLRLCVSLLGEMEQGLLGLDQEGLLKDFRSRAVGVDAEGVIVRALSDGGKRGGGGDSPSGGEGVEAKRSSEGGVADAGELGWSTGPDYLLVLRSRHCQTLGLVELREEAKSGLIVEHSSLQDALLAVTRSLGWDSLRTCWLETCLAARSDHERHTLASQALRFVIANGGHVKAASFMLGVGGADANEVDSRLLSPLHLVAMFNRPDIARVLLMCGASPRLVGGVTRAAAARGGKLWSPLEMAEEACTEGGALDDGAAL 443
BLAST of mRNA_H-elongata_contig12695.1999.1 vs. uniprot
Match: A0A6G0X0L2_9STRA (Rab-GAP TBC domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X0L2_9STRA) HSP 1 Score: 138 bits (347), Expect = 4.090e-32 Identity = 114/383 (29.77%), Postives = 186/383 (48.56%), Query Frame = 1
Query: 82 EEINRDILRTVRGVTGLLLDFSSDQRGELAGSINRVLNALAHVDNMSYCQGQNYVVDVMMKAGLPERETFCLFLYLLRQGHLHGIYRKEVPMLVGYMDKFEEQLRLRLPKLAAHFEAEHYPPPLYALEWMTTLFGLAAQPLISLVALDLVLAGARNPVLRLCVSLLGGMEEDLLKLDQEGLLEEFRSRAVAVDAEEVIVRALIDGGRGGRGAGAKRSRAGADRHLGWSTGPDYLLVLRSRYCETVGLVELREEARKTLLVHHTALQAITRMLGWDCLRACWLKSCLAARSDHDRH-LLASEALRFVIANGGHAKAAAFMLGVGGADANGVDPHLLTPLHLAGLYNRPDVVRVLLMCGASPRLTGGVTRVAAAREGKLWSPLEM 1227
E ++RD+ RT +L D D + +++RVLNA+A + YCQG N++ V + GL E +++ FLYLL+ HL Y++ L Y+ F++QL++ LP+LA EA + LY +EW TT+F +++ + LD++L ++ + R+ ++LL +E L+ L E LL +F+ D +VI+ AL S A H+ T P +L +R L+ + + H T + + A ++D + H ++A+E L I G H AAF + AD N D + PLH A + N+PD+VR+LL+ GA+ GG T +A R + +PLE+
Sbjct: 65 EYVDRDVPRTF-----VLFDLPHDTT-PMEPALHRVLNAIAEAEE-GYCQGMNFIAAVFLVQGLSEEDSYITFLYLLKHKHLSQFYKESSIFLNEYLALFQDQLKIYLPELAERLEACGFSVYLYGIEWFTTIFSCSSKLDLCRAVLDMILVDVQDVMFRVGLALLKNVESQLMDLQFEDLLHQFKQIVKQADTYQVILDAL--------------SMA---PHV---TSPGGILAKTARK-------SLQPQGNWPFIRHRTLGPVFSEACKDGSFNKSHWEEWKATQNDPEAHQVIANEILHQAIWYG-HLHIAAFAIHTCQADLNESDDFGIQPLHFAIVRNQPDIVRLLLVEGANLNSPGGNT-IAMERALFMKTPLEL 411
BLAST of mRNA_H-elongata_contig12695.1999.1 vs. uniprot
Match: A0A1V9Y8V1_9STRA (Rab-GAP TBC domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Y8V1_9STRA) HSP 1 Score: 117 bits (293), Expect = 7.580e-25 Identity = 104/363 (28.65%), Postives = 171/363 (47.11%), Query Frame = 1
Query: 184 RVLNALAHVDNMSYCQGQNYVVDVMMKAGLPERETFCLFLYLLRQGHLHGIYRKEVPMLVGYMDKFEEQLRLRLPKLAAHFEAEHYPPPLYALEWMTTLFGLAAQPLISLVALDLVLAGARNPVLRLCVSLLGGMEEDLLKLDQEGLLEEFRSRAVAVDAEEVIVRALIDGGRGGRGAGAKRSRAGADRHLGWSTGPDYLLVLRSRYCETVGLVELREEARKTLLVHHTALQAITRMLGWD-------CLRACWLKSCLAARSDH---DRH-----LLASEALRFVIANGGHAKAAAFMLGVGGADANGVDPHLLTPLHLAGLYNRPDVVRVLLMCGASPRLTGGVTRVAAAREGKLWSPLEM 1227
RVLNA+A ++ YCQG N++ V ++AGLPE + + F+YLL ++ Y+ L Y+ +F+ ++ LP+LAA E+ + LY +EW TTLF +++ ++ +DL+LA + + R+ ++LL EE L+ ++ + LL +F+ VD ++I AL H G S+ G++++ A++TL ++ T + WD + C+L + DR ++A+EAL I G A F L +G A N D L PLH A + N+PD VR+L GA L GG + V + + SP+E+
Sbjct: 93 RVLNAVARAED-GYCQGMNFIAAVFLEAGLPEEDAYSTFVYLLHHKYMSQFYKDSSIFLNEYLKQFQARVHELLPELAARLESCGFEVYLYGIEWFTTLFSCSSKIDLTHAVIDLILANVTDVMFRVGIALLKNCEEQLMSMNFDDLLRDFKVITKQVDTYQIICDALT-----------------IPPHPGASSYG--------------GILQMT--AKQTLPQWWPFVKRCTVSVEWDKAIEFGSVAKICFLWEAWQRTTSKWPLDRRNIANTVIANEALCLAIWYGSIA-VGVFALEMG-AQVNDPDEWGLRPLHFAVVRNQPDFVRLLWRSGADVNLRGGNSSVIVP-QWYMKSPVEL 418
BLAST of mRNA_H-elongata_contig12695.1999.1 vs. uniprot
Match: A0A485KXF4_9STRA (Aste57867_12889 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KXF4_9STRA) HSP 1 Score: 116 bits (290), Expect = 1.730e-24 Identity = 101/387 (26.10%), Postives = 165/387 (42.64%), Query Frame = 1
Query: 82 EEINRDILRTVRGVTGLLLDFSSDQRGELAGSINRVLNALAHVDNMSYCQGQNYVVDVMMKAGLPERETFCLFLYLLRQGHLHGIYRKEVPMLVGYMDKFEEQLRLRLPKLAAHFEAEHYPPPLYALEWMTTLFGLAAQPLISLVALDLVLAGARNPVLRLCVSLLGGMEEDLLKLDQEGLLEEFRSRAVAVDAEEVIVRALIDGGRGGRGAGAKRSRAGADRHLGWSTGPDYLLVLRSRYCETVGLVELREEARKTLLVHHTALQAITRMLGWDCLRACWLKSCLAARSDHDRHLLASEALRFVIANGGHAKAAAFMLGVGGADANGVDPHLLTPLHLAGLYNRPDVVRVLLMCGASPRLTGGVTRVAAAREGKLWSPLEMAEEAC 1242
E + RD+ RT +L + D + ++ RVLNA++ ++ YCQG N++ V + G+ E + + +LYLL+ +L Y+ L Y+ +F Q LP+LA+ +A + LY +EW TT+F +++ + LD++L ++ + R+ ++LL +E L+ L E LL +F+ D +V++ AL GG A R D W + H T A++R A A S ++A+E L + + G H + D N D L PLH A + N DVVR LL GA + GG A R + SP ++++ C
Sbjct: 68 EHVERDVPRTY-----VLFELPHDTTA-MEPALRRVLNAISEAED-GYCQGMNFIAAVFLVEGMSEEDAYITYLYLLKHKYLSQFYKDSSVFLNEYLLQFHAQFAALLPELASRLDACGFSVYLYGVEWFTTIFSCSSKMDLCHAVLDMILVDVQDVMFRVGLALLKNVESQLMDLQFEDLLHQFKHIVKQADTYQVVMDALAMPTFGGMLAKTARRTFNPDGS--WP-----------------------------FIRHRTLGPAMSRACEDGRFSAQQWTDWAATASPEASAVVANEILHYAVWYG-HVHLVTLAIDTCKVDVNASDDFALRPLHFAVVRNHVDVVRCLLAAGADMHVRGG-NSAAMERGLVMISPAQLSQRWC 414
BLAST of mRNA_H-elongata_contig12695.1999.1 vs. uniprot
Match: A0A6G0XPR2_9STRA (Rab-GAP TBC domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XPR2_9STRA) HSP 1 Score: 79.7 bits (195), Expect = 1.220e-12 Identity = 65/206 (31.55%), Postives = 102/206 (49.51%), Query Frame = 1
Query: 79 EEEINRDILRTVRGVTGLLLDFSSDQRGELAGSINRVLNALAHVD-NMSYCQGQNYVVDVMMKAGLPERETFCLFLYLL--RQGHLHGIYRKEVPMLVGYMDKFEEQLRLRLPKLAAHFEAEHYPPPLYALEWMTTLFGLAAQPLISLVALDLVLAGARNPVLRLCVSLLGGMEEDLLKLDQEGLLEEFRSRAVAVDAEEVIVRAL 687
E+ I RDI RT L D +S + L VL A + D N+ YCQG ++ + + +PE +TF + L ++ + IYR +P +V M F++ L++ +PKLA H +AE P +YA +W T+F + D+ L V R+ V+LL E L+ L E ++E FR +VD +EV+ A+
Sbjct: 155 EDTILRDIGRTFPK-HHLFKDSTSIGQSALLN----VLKAYSVYDPNVGYCQGMGFI-SALFLSYMPEEQTFWHLVACLNHKKYGMADIYRPGMPRVVEIMAIFDQCLKIYVPKLAEHLDAEGLHPTMYATQWFVTIFAYSFPFDFVTRVWDIFLHEGWKIVFRVTVALLKVNERKLMTLKFEKIMEFFRDMPPSVDTDEVVATAV 354
BLAST of mRNA_H-elongata_contig12695.1999.1 vs. uniprot
Match: A0A1V9ZMJ4_9STRA (Rab-GAP TBC domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZMJ4_9STRA) HSP 1 Score: 75.5 bits (184), Expect = 7.850e-11 Identity = 60/202 (29.70%), Postives = 98/202 (48.51%), Query Frame = 1
Query: 79 EEEINRDILRTVRGVTGLLLDFSSDQRGELAGSINRVLNALAHVD-NMSYCQGQNYVVDVMMKAGLPERETFCLFLYLLRQGH--LHGIYRKEVPMLVGYMDKFEEQLRLRLPKLAAHFEAEHYPPPLYALEWMTTLFGLAAQPLISLVALDLVLAGARNPVLRLCVSLLGGMEEDLLKLDQEGLLEEFRSRAVAVDAEEVI 675
EE I+RDI RT D + G+++ +L A + D ++ YCQG ++ + + +PE +TF + L Q L +YR +P +V + F+ +RL LP LA H +AE P ++A +W TLF + + D+ L V R+ V+LL E+ LL E ++E F+ VD ++V+
Sbjct: 147 EETISRDIGRTFPKH-----HLFKDAQSIGQGALSNILKAYSVYDPDVGYCQGMGFI-SALFLSYMPEEQTFWQLVACLNQKKFGLADLYRPGMPRVVEVIAIFDACVRLYLPALARHLDAEGLHPTMFATQWFVTLFAYSFPFELVTRVWDVFLHEGWKIVYRVAVALLKLSEKALLAKKFEKIMEFFKELPTLVDTKQVL 342
BLAST of mRNA_H-elongata_contig12695.1999.1 vs. uniprot
Match: A0A163K2R5_ABSGL (Rab-GAP TBC domain-containing protein n=1 Tax=Absidia glauca TaxID=4829 RepID=A0A163K2R5_ABSGL) HSP 1 Score: 72.8 bits (177), Expect = 4.750e-10 Identity = 54/184 (29.35%), Postives = 91/184 (49.46%), Query Frame = 1
Query: 79 EEEINRDILRTVRGVTGLLLDFSSDQRGELAGSINRVLNALAHVD-NMSYCQGQNYVVDVMMKAGLPERETFCLFLYLLRQGHLHGIYRKEVPMLVGYMDKFEEQLRLRLPKLAAHFEAEHYPPPLYALEWMTTLFGLAAQPLISLVALDLVLAGARNPVLRLCVSLLGGMEEDLLKLDQEGLL 627
E+ I RD+ RT T F ++ G+ + VL A + D + YCQG +VV ++ +PE FC+ + L+ L G + ++ +L M +F++ L++ LP + H EA+ P +YA +W TLF + LD+V +L + ++L+ + LL L+ EGLL
Sbjct: 341 EKVIQRDLARTFPTHT-----FFRERDGQ--EMLFDVLRAYSLYDPQVGYCQGLPFVVGCLLLQ-VPEETAFCVLIDLMNNYGLRGHFTPKMELLHERMFQFDDLLKVHLPIIHRHLEAQGVRPTMYASQWFMTLFAYRCPLELVFRVLDMVFTQGTCIILNVALALMQKNQSTLLSLEFEGLL 516
BLAST of mRNA_H-elongata_contig12695.1999.1 vs. uniprot
Match: A0A0K8TSK8_TABBR (Putative rab gtpase-activating protein 1-like isoform x3 n=1 Tax=Tabanus bromius TaxID=304241 RepID=A0A0K8TSK8_TABBR) HSP 1 Score: 72.0 bits (175), Expect = 1.000e-9 Identity = 55/200 (27.50%), Postives = 91/200 (45.50%), Query Frame = 1
Query: 43 LYVVLRGCAADAEEEINRDILRTVRGVTGLLLDFSSDQRGELAGSINRVLNALAHVD-NMSYCQGQNYVVDVMMKAGLPERETFCLFLYLLRQGHLHGIYRKEVPMLVGYMDKFEEQLRLRLPKLAAHFEAEHYPPPLYALEWMTTLFGLAAQPLISLVALDLVLAGARNPVLRLCVSLLGGMEEDLLKLDQEGLLEEFR 639
LY +L E I RDI RT + G ++ +V A A D + YCQG +++ ++ +PE ++FC+ + L+ L +Y+ L + + ++ +LPKL HFE ++A +W TLF LD+ L + ++ ++LL E DL+KLD EG+L+ FR
Sbjct: 631 LYRILITKETKCENVIQRDIHRTFPAN-----QLFKESGGSGQDALFKVSKAYAVYDAEVGYCQGLSFIAASLL-LHMPEEDSFCVLVALMYDYGLRDLYKHGFENLYMRLYQLSRLMKDQLPKLYEHFEKTGVETHMFASQWFLTLFTARFPLYFVFHVLDVFLLDGMPILFQVAITLLSVCENDLIKLDFEGILKYFR 824
BLAST of mRNA_H-elongata_contig12695.1999.1 vs. uniprot
Match: A0A7S0PBW2_CAFRO (Hypothetical protein (Fragment) n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0PBW2_CAFRO) HSP 1 Score: 66.6 bits (161), Expect = 6.190e-9 Identity = 48/159 (30.19%), Postives = 80/159 (50.31%), Query Frame = 1
Query: 175 SINRVLNALAHVDN-MSYCQGQNYVVDVMMKAGLPERETFCLFLYLLRQGHLHGIYRKEVPMLVGYMDK---FEEQLRLRLPKLAAHFEAEHYPPPLYALEWMTTLFGLAAQPLISLVALDLVLAGARNPVLRLCVSLLGGMEEDLLKLDQEGLLEEFR 639
S+ RVL A A D+ + YCQG ++ V++ PE + F L L+ L + + + R +P L + E LR P+ AAH EA+H P ++A W+ T F + ++ D ++A PV+R+ V+++ + KL+ EG+L R
Sbjct: 6 SLLRVLRAYAACDDEVGYCQGMAFLAGVLLSF-CPEEDAF-LMLFQLMKSEPYMLRRLFLPGLRAVATQCRIIEGLLRDNAPRFAAHLEAQHVMPEMWATSWLMTAFSTSVPFAVTARVWDCLVAEGYKPVVRVAVAVMLRASPHVAKLELEGILMTMR 162
BLAST of mRNA_H-elongata_contig12695.1999.1 vs. uniprot
Match: A0A5A8DQX2_CAFRO (Rab-GAP TBC domain-containing protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DQX2_CAFRO) HSP 1 Score: 66.6 bits (161), Expect = 2.000e-8 Identity = 48/159 (30.19%), Postives = 80/159 (50.31%), Query Frame = 1
Query: 175 SINRVLNALAHVDN-MSYCQGQNYVVDVMMKAGLPERETFCLFLYLLRQGHLHGIYRKEVPMLVGYMDK---FEEQLRLRLPKLAAHFEAEHYPPPLYALEWMTTLFGLAAQPLISLVALDLVLAGARNPVLRLCVSLLGGMEEDLLKLDQEGLLEEFR 639
S+ RVL A A D+ + YCQG ++ V++ PE + F L L+ L + + + R +P L + E LR P+ AAH EA+H P ++A W+ T F + ++ D ++A PV+R+ V+++ + KL+ EG+L R
Sbjct: 66 SLLRVLRAYAACDDEVGYCQGMAFLAGVLLSF-CPEEDAF-LMLFQLMKSEPYMLRRLFLPGLRAVATQCRIIEGLLRDNAPRFAAHLEAQHVMPEMWATSWLMTAFSTSVPFAVTARVWDCLVAEGYKPVVRVAVAVMLRASPHVAKLELEGILMTMR 222 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12695.1999.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 19
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig12695.1999.1 >prot_H-elongata_contig12695.1999.1 ID=prot_H-elongata_contig12695.1999.1|Name=mRNA_H-elongata_contig12695.1999.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=426bp MQRIPPALLASYRALYVVLRGCAADAEEEINRDILRTVRGVTGLLLDFSSback to top mRNA from alignment at H-elongata_contig12695:2053..7906+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig12695.1999.1 ID=mRNA_H-elongata_contig12695.1999.1|Name=mRNA_H-elongata_contig12695.1999.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5854bp|location=Sequence derived from alignment at H-elongata_contig12695:2053..7906+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig12695:2053..7906+ >mRNA_H-elongata_contig12695.1999.1 ID=mRNA_H-elongata_contig12695.1999.1|Name=mRNA_H-elongata_contig12695.1999.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2556bp|location=Sequence derived from alignment at H-elongata_contig12695:2053..7906+ (Himanthalia elongata Himel1 dioecious)back to top |