mRNA_H-elongata_contig126935.1997.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig126935.1997.1
Unique NamemRNA_H-elongata_contig126935.1997.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig126935.1997.1 vs. uniprot
Match: D8LHH9_ECTSI (Glutathione peroxidase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHH9_ECTSI)

HSP 1 Score: 122 bits (305), Expect = 3.580e-33
Identity = 57/64 (89.06%), Postives = 58/64 (90.62%), Query Frame = 1 
Query:    1 MSSKPVALLLGDTFPDFEAETTQGKIKLHDYLGSSWGLIISHPADFTPVCTTELGTCAKLNQEG 192
            MSS PVALLLGD FPDFEAETT G IKLHDYLGSSWGL+ SHPADFTPVCTTELGTCAKLN EG
Sbjct:    1 MSSDPVALLLGDKFPDFEAETTAGPIKLHDYLGSSWGLLCSHPADFTPVCTTELGTCAKLNVEG 64
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BLAST of mRNA_H-elongata_contig126935.1997.1 vs. uniprot
Match: A0A1A8CSS9_9TELE (Peroxiredoxin 6 n=1 Tax=Nothobranchius kadleci TaxID=1051664 RepID=A0A1A8CSS9_9TELE)

HSP 1 Score: 96.7 bits (239), Expect = 1.640e-24
Identity = 42/56 (75.00%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:   22 LLLGDTFPDFEAETTQGKIKLHDYLGSSWGLIISHPADFTPVCTTELGTCAKLNQE 189
            LLLGD FPDFEAETT GKIK HD+LG SWG++ SHP D+TPVCTTELG  AKL+ E
Sbjct:    4 LLLGDVFPDFEAETTVGKIKFHDFLGDSWGILFSHPRDYTPVCTTELGRAAKLSSE 59
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BLAST of mRNA_H-elongata_contig126935.1997.1 vs. uniprot
Match: B5X838_SALSA (Peroxiredoxin-6 n=10 Tax=Salmonidae TaxID=8015 RepID=B5X838_SALSA)

HSP 1 Score: 96.7 bits (239), Expect = 2.770e-23
Identity = 41/56 (73.21%), Postives = 49/56 (87.50%), Query Frame = 1 
Query:   22 LLLGDTFPDFEAETTQGKIKLHDYLGSSWGLIISHPADFTPVCTTELGTCAKLNQE 189
            LLLGD FP+FEAETT+GKIK HD+LG SWG++ SHP+D+TPVCTTELG  AKL+ E
Sbjct:    4 LLLGDVFPNFEAETTKGKIKFHDFLGDSWGILFSHPSDYTPVCTTELGRAAKLSDE 59
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BLAST of mRNA_H-elongata_contig126935.1997.1 vs. uniprot
Match: A0A8C6LZY2_NOTFU (Thioredoxin domain-containing protein n=2 Tax=Nothobranchius furzeri TaxID=105023 RepID=A0A8C6LZY2_NOTFU)

HSP 1 Score: 96.7 bits (239), Expect = 2.770e-23
Identity = 42/56 (75.00%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:   22 LLLGDTFPDFEAETTQGKIKLHDYLGSSWGLIISHPADFTPVCTTELGTCAKLNQE 189
            LLLGD FPDFEAETT GKIK HD+LG SWG++ SHP D+TPVCTTELG  AKL+ E
Sbjct:    4 LLLGDVFPDFEAETTVGKIKFHDFLGDSWGILFSHPRDYTPVCTTELGRAAKLSSE 59
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BLAST of mRNA_H-elongata_contig126935.1997.1 vs. uniprot
Match: A0A4W6BRB8_LATCA (Peroxiredoxin-6 n=3 Tax=Percomorphaceae TaxID=1489872 RepID=A0A4W6BRB8_LATCA)

HSP 1 Score: 96.7 bits (239), Expect = 2.830e-23
Identity = 41/56 (73.21%), Postives = 48/56 (85.71%), Query Frame = 1 
Query:   22 LLLGDTFPDFEAETTQGKIKLHDYLGSSWGLIISHPADFTPVCTTELGTCAKLNQE 189
            LLLGD FPDFEAETT GKIK H+YLG SWG++ SHP D+TPVCTTELG  A+L++E
Sbjct:    4 LLLGDVFPDFEAETTTGKIKFHEYLGDSWGILFSHPKDYTPVCTTELGRAARLSEE 59
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BLAST of mRNA_H-elongata_contig126935.1997.1 vs. uniprot
Match: A0A8C6LV07_NOTFU (Thioredoxin domain-containing protein n=1 Tax=Nothobranchius furzeri TaxID=105023 RepID=A0A8C6LV07_NOTFU)

HSP 1 Score: 96.7 bits (239), Expect = 3.350e-23
Identity = 42/56 (75.00%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:   22 LLLGDTFPDFEAETTQGKIKLHDYLGSSWGLIISHPADFTPVCTTELGTCAKLNQE 189
            LLLGD FPDFEAETT GKIK HD+LG SWG++ SHP D+TPVCTTELG  AKL+ E
Sbjct:    4 LLLGDVFPDFEAETTVGKIKFHDFLGDSWGILFSHPRDYTPVCTTELGRAAKLSSE 59
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BLAST of mRNA_H-elongata_contig126935.1997.1 vs. uniprot
Match: UPI0003EBE390 (peroxiredoxin-6-like n=1 Tax=Neolamprologus brichardi TaxID=32507 RepID=UPI0003EBE390)

HSP 1 Score: 92.4 bits (228), Expect = 3.760e-23
Identity = 39/56 (69.64%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:   22 LLLGDTFPDFEAETTQGKIKLHDYLGSSWGLIISHPADFTPVCTTELGTCAKLNQE 189
            LLLGD FPDFEAETT G IKLH++LG SWG++ SHP D+TPVCTTELG  A+L+ +
Sbjct:    4 LLLGDVFPDFEAETTTGTIKLHEFLGDSWGILFSHPRDYTPVCTTELGRAARLSSD 59
[Close]
BLAST of mRNA_H-elongata_contig126935.1997.1 vs. uniprot
Match: A0A6P7K4I4_9TELE (Peroxiredoxin-6 n=11 Tax=Percomorphaceae TaxID=1489872 RepID=A0A6P7K4I4_9TELE)

HSP 1 Score: 96.3 bits (238), Expect = 3.990e-23
Identity = 41/56 (73.21%), Postives = 48/56 (85.71%), Query Frame = 1 
Query:   22 LLLGDTFPDFEAETTQGKIKLHDYLGSSWGLIISHPADFTPVCTTELGTCAKLNQE 189
            LLLGD FPDFEAETT GKIKLH++LG SWG++ SHP D+TPVCTTELG  A+L+ E
Sbjct:    4 LLLGDVFPDFEAETTSGKIKLHEFLGDSWGILFSHPRDYTPVCTTELGRAARLSSE 59
[Close]
BLAST of mRNA_H-elongata_contig126935.1997.1 vs. uniprot
Match: UPI001CA71DEF (peroxiredoxin n=1 Tax=Algiphilus sp. NNCM1 TaxID=2834409 RepID=UPI001CA71DEF)

HSP 1 Score: 95.5 bits (236), Expect = 5.990e-23
Identity = 41/58 (70.69%), Postives = 50/58 (86.21%), Query Frame = 1 
Query:   16 VALLLGDTFPDFEAETTQGKIKLHDYLGSSWGLIISHPADFTPVCTTELGTCAKLNQE 189
            +AL LGDT PDFEA+TT+G+I+ HD+LG SWG++ SHPAD+TPVCTTELG  AKL QE
Sbjct:    1 MALRLGDTAPDFEADTTEGRIRFHDWLGDSWGVLFSHPADYTPVCTTELGETAKLKQE 58
[Close]
BLAST of mRNA_H-elongata_contig126935.1997.1 vs. uniprot
Match: A0A4W3JQ86_CALMI (Peroxiredoxin-6 n=2 Tax=Callorhinchus milii TaxID=7868 RepID=A0A4W3JQ86_CALMI)

HSP 1 Score: 95.5 bits (236), Expect = 7.290e-23
Identity = 40/58 (68.97%), Postives = 52/58 (89.66%), Query Frame = 1 
Query:   16 VALLLGDTFPDFEAETTQGKIKLHDYLGSSWGLIISHPADFTPVCTTELGTCAKLNQE 189
            +A+LLGD FPDFEA+TT+G+I  +D+LGSSWG+I SHPAD+TPVCTTELG  AK+++E
Sbjct:    1 MAILLGDKFPDFEADTTEGRIHFYDWLGSSWGIIFSHPADYTPVCTTELGRAAKMSKE 58
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig126935.1997.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHH9_ECTSI3.580e-3389.06Glutathione peroxidase n=2 Tax=Ectocarpus TaxID=28... [more]
A0A1A8CSS9_9TELE1.640e-2475.00Peroxiredoxin 6 n=1 Tax=Nothobranchius kadleci Tax... [more]
B5X838_SALSA2.770e-2373.21Peroxiredoxin-6 n=10 Tax=Salmonidae TaxID=8015 Rep... [more]
A0A8C6LZY2_NOTFU2.770e-2375.00Thioredoxin domain-containing protein n=2 Tax=Noth... [more]
A0A4W6BRB8_LATCA2.830e-2373.21Peroxiredoxin-6 n=3 Tax=Percomorphaceae TaxID=1489... [more]
A0A8C6LV07_NOTFU3.350e-2375.00Thioredoxin domain-containing protein n=1 Tax=Noth... [more]
UPI0003EBE3903.760e-2369.64peroxiredoxin-6-like n=1 Tax=Neolamprologus bricha... [more]
A0A6P7K4I4_9TELE3.990e-2373.21Peroxiredoxin-6 n=11 Tax=Percomorphaceae TaxID=148... [more]
UPI001CA71DEF5.990e-2370.69peroxiredoxin n=1 Tax=Algiphilus sp. NNCM1 TaxID=2... [more]
A0A4W3JQ86_CALMI7.290e-2368.97Peroxiredoxin-6 n=2 Tax=Callorhinchus milii TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig126935contigH-elongata_contig126935:692..1760 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score95.5
Seed ortholog evalue9.8e-18
Seed eggNOG ortholog144197.XP_008291580.1
Preferred namePRDX6
KEGG rclassRC00034
KEGG koko:K11188
KEGG ReactionR00602,R02596,R03919,R04007,R07443
KEGG Pathwayko00940,ko01100,ko01110,map00940,map01100,map01110
GOsGO:0000302,GO:0000323,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003824,GO:0004601,GO:0004602,GO:0004620,GO:0004623,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005764,GO:0005766,GO:0005773,GO:0005775,GO:0005829,GO:0006629,GO:0006644,GO:0006650,GO:0006793,GO:0006796,GO:0006810,GO:0006887,GO:0006950,GO:0006955,GO:0006979,GO:0008150,GO:0008152,GO:0009056,GO:0009395,GO:0009636,GO:0009893,GO:0009987,GO:0010468,GO:0010604,GO:0010628,GO:0012505,GO:0016042,GO:0016043,GO:0016192,GO:0016209,GO:0016298,GO:0016491,GO:0016684,GO:0016787,GO:0016788,GO:0016999,GO:0017001,GO:0017144,GO:0019219,GO:0019222,GO:0019637,GO:0019899,GO:0022607,GO:0030030,GO:0030031,GO:0030141,GO:0031323,GO:0031325,GO:0031410,GO:0031625,GO:0031974,GO:0031982,GO:0031983,GO:0032060,GO:0032940,GO:0033120,GO:0034774,GO:0035578,GO:0036230,GO:0042119,GO:0042221,GO:0042582,GO:0042737,GO:0042743,GO:0042744,GO:0042802,GO:0042803,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043299,GO:0043312,GO:0043484,GO:0044085,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044389,GO:0044421,GO:0044422,GO:0044424,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0045935,GO:0046434,GO:0046475,GO:0046486,GO:0046503,GO:0046903,GO:0046983,GO:0047499,GO:0048024,GO:0048026,GO:0048471,GO:0048518,GO:0048522,GO:0050684,GO:0050685,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051179,GO:0051186,GO:0051187,GO:0051234,GO:0051252,GO:0051254,GO:0051716,GO:0052689,GO:0055114,GO:0060205,GO:0060255,GO:0065007,GO:0070013,GO:0070887,GO:0071704,GO:0071840,GO:0072593,GO:0080090,GO:0097237,GO:0097708,GO:0098754,GO:0098869,GO:0099503,GO:0120031,GO:0120036,GO:1901575,GO:1901700,GO:1903311,GO:1903313,GO:1990748
EggNOG free text desc.Peroxiredoxin 6
EggNOG OGs38CN4@33154,3BBQ4@33208,3CW2U@33213,484YP@7711,48ZKW@7742,4A77A@7898,COG0450@1,KOG0854@2759
EC1.11.1.15,1.11.1.7
COG Functional cat.O
Best tax levelActinopterygii
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size198
Cds size198
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929752.6270678-CDS-H-elongata_contig126935:691..7601622929752.6270678-CDS-H-elongata_contig126935:691..760Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig126935 692..760 +
1691679144.1166322-CDS-H-elongata_contig126935:691..7601691679144.1166322-CDS-H-elongata_contig126935:691..760Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig126935 692..760 +
1622929752.6400115-CDS-H-elongata_contig126935:1631..17601622929752.6400115-CDS-H-elongata_contig126935:1631..1760Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig126935 1632..1760 +
1691679144.1310039-CDS-H-elongata_contig126935:1631..17601691679144.1310039-CDS-H-elongata_contig126935:1631..1760Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig126935 1632..1760 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig126935.1997.1prot_H-elongata_contig126935.1997.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig126935 692..1760 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig126935.1997.1

>prot_H-elongata_contig126935.1997.1 ID=prot_H-elongata_contig126935.1997.1|Name=mRNA_H-elongata_contig126935.1997.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=66bp
MSSKPVALLLGDTFPDFEAETTQGKIKLHDYLGSSWGLIISHPADFTPVC
TTELGTCAKLNQEGQS
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mRNA from alignment at H-elongata_contig126935:692..1760+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig126935.1997.1 ID=mRNA_H-elongata_contig126935.1997.1|Name=mRNA_H-elongata_contig126935.1997.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1069bp|location=Sequence derived from alignment at H-elongata_contig126935:692..1760+ (Himanthalia elongata Himel1 dioecious)
ATGTCTTCCAAGCCCGTGGCGCTCCTACTCGGGGACACGTTCCCCGATTT
CGAGGCCGAGACTACCCAGGTGCGTTGATCGGTTACCCTAGGAGAGAGGC
GCAATTTCTACGACAGTAAAATCGGTATATATCATCAGCAGCGGGTTTCT
CATTTTGAATTTGATCAAATTGCTGGTGTTGTGATGCTCACGATAACAAA
TAATAAAGCCAAGACGTTCGCGAGGGATACAACGGGATCGTCGCAATCGG
TAGCGCATACTAGAGATGCTAACTTATGCGTGAGCTCTCTGTCATGCATG
TAATGGCCCCTTGGTCATTCCCTGGCAGCAGCACACAGCCGTGGTCAACA
CGTTTCACAGGGAGAGCCAGACGAAGCTAGCAGTTTCTCAAAAGAATCAT
CGTTTGAACCCAATTATTGTAGCATATATTGTACATGGTAGAGGTTTCGA
AGCCATAGTTCTGCTCCAAAAGAGAAGAAGTACCATGTTGCTCGGAGAAA
TACAACGCCGCTCCCGCTCCGGGAAACATCCGACATGATAAGCTTTCTGA
ACCAGGGCGTAGGATATATGACTGGTTACCTGCTTCTACTTCACAATACA
AGCAGAGGCCTAAACGAACCAGGCTCAACAAGTCTGCGGCTGCTGTAGGT
TACTAATAATGCGGACACAAACACTACTACGACAGTATTTCCCAGTCTAG
AGCAAGAGCGGCATGTTTCGATTAAACCTAGCCCGCACGCACATAGACAA
ACACTGATCTTCGTCACGAACGGGCCTTAATACACAAGTTCTCCTCTACC
TATCCGTGTCATTCCATGATCCTCGACGTATTCGAGAGTAATGAGTCATG
TTATACCGACGTCAGCATCTGCAAAGGAAGAACTTTACGTTAAACGCTTC
TCGTACGGCTACACTCTTCTTTCCATTTGTTTTATCCCAGGGCAAAATTA
AACTGCACGACTACCTCGGATCTTCATGGGGATTGATTATATCTCACCCC
GCCGATTTCACCCCAGTGTGTACCACCGAGCTAGGAACATGCGCCAAGCT
AAACCAGGAAGGTCAGTCG
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Coding sequence (CDS) from alignment at H-elongata_contig126935:692..1760+

>mRNA_H-elongata_contig126935.1997.1 ID=mRNA_H-elongata_contig126935.1997.1|Name=mRNA_H-elongata_contig126935.1997.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=396bp|location=Sequence derived from alignment at H-elongata_contig126935:692..1760+ (Himanthalia elongata Himel1 dioecious)
ATGTCTTCCAAGCCCGTGGCGCTCCTACTCGGGGACACGTTCCCCGATTT
CGAGGCCGAGACTACCCAGATGTCTTCCAAGCCCGTGGCGCTCCTACTCG
GGGACACGTTCCCCGATTTCGAGGCCGAGACTACCCAGGGCAAAATTAAA
CTGCACGACTACCTCGGATCTTCATGGGGATTGATTATATCTCACCCCGC
CGATTTCACCCCAGTGTGTACCACCGAGCTAGGAACATGCGCCAAGCTAA
ACCAGGAAGGTCAGTCGGGCAAAATTAAACTGCACGACTACCTCGGATCT
TCATGGGGATTGATTATATCTCACCCCGCCGATTTCACCCCAGTGTGTAC
CACCGAGCTAGGAACATGCGCCAAGCTAAACCAGGAAGGTCAGTCG
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