prot_H-elongata_contig126911.1996.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig126911.1996.1
Unique Nameprot_H-elongata_contig126911.1996.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length131
Homology
BLAST of mRNA_H-elongata_contig126911.1996.1 vs. uniprot
Match: A0A6H5L415_9PHAE (DSHCT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L415_9PHAE)

HSP 1 Score: 213 bits (541), Expect = 4.490e-63
Identity = 98/124 (79.03%), Postives = 115/124 (92.74%), Query Frame = 0
Query:    1 DAWLWRVLTRQNIRTLGYTELAALMPAVLNEYTKPDLFTLYGPSEGVAKFIEELGPIASELSEVQIIEQVDQPIRLDGTLCGLVEGWANGCDWSELVASTSLDQGDLCRIIRRSMEMLRQIPVL 124
            + W+  VLTR++I  LGYTELA+LMPA+LNEYT+PDLFTLYGPSEGV+ F+EEL P+ASELSE+Q++EQV+QP+RLD  LCGLVEGWANGCDWSELVASTSLDQGDLCRI+RR+MEMLRQIPVL
Sbjct:  448 ELWMALVLTRKSILQLGYTELASLMPAILNEYTRPDLFTLYGPSEGVSAFLEELAPVASELSEIQMLEQVEQPVRLDSKLCGLVEGWANGCDWSELVASTSLDQGDLCRILRRAMEMLRQIPVL 571          
BLAST of mRNA_H-elongata_contig126911.1996.1 vs. uniprot
Match: D7G373_ECTSI (DEAD box helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G373_ECTSI)

HSP 1 Score: 215 bits (547), Expect = 3.460e-62
Identity = 99/124 (79.84%), Postives = 116/124 (93.55%), Query Frame = 0
Query:    1 DAWLWRVLTRQNIRTLGYTELAALMPAVLNEYTKPDLFTLYGPSEGVAKFIEELGPIASELSEVQIIEQVDQPIRLDGTLCGLVEGWANGCDWSELVASTSLDQGDLCRIIRRSMEMLRQIPVL 124
            + W+  VLTR++I  LGYTELA+LMPA+LNEYT+PDLFTLYGPSEGV+ F+EEL P+ASELSE+Q++EQV+QP+RLDG LCGLVEGWANGCDWSELVASTSLDQGDLCRI+RR+MEMLRQIPVL
Sbjct: 1186 ELWMALVLTRKSILQLGYTELASLMPAILNEYTRPDLFTLYGPSEGVSAFLEELAPVASELSEIQMLEQVEQPVRLDGKLCGLVEGWANGCDWSELVASTSLDQGDLCRILRRAMEMLRQIPVL 1309          
BLAST of mRNA_H-elongata_contig126911.1996.1 vs. uniprot
Match: A0A835Z819_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z819_9STRA)

HSP 1 Score: 148 bits (374), Expect = 6.870e-39
Identity = 70/128 (54.69%), Postives = 96/128 (75.00%), Query Frame = 0
Query:    1 DAWLWRVLTRQNIRTLGYTELAALMPAVLNEYTKPDLFTLYGPSEGVAKFIEELGPIASELSEVQIIEQVDQPIRLDGTLCGLVEGWANGCDWSELVASTSLDQGDLCRIIRRSMEMLRQIPVLVRCD 128
            + WL  VLT   I+ L   +LA L+PA+++EY++PD+F LYG SE V+  +E L P+A+EL+ VQ+   VD P++LD +L GLVE WA GCDW+EL ASTSLDQGD+CR++RR+ME+LRQI +L   D
Sbjct: 1004 ELWLALVLTSSAIKALSDVQLAGLVPAIISEYSRPDMFNLYGVSEEVSLCVEALVPLATELTTVQLENAVDLPVKLDASLGGLVESWALGCDWAELCASTSLDQGDICRLLRRTMEVLRQIALLPGVD 1131          
BLAST of mRNA_H-elongata_contig126911.1996.1 vs. uniprot
Match: A0A7S2DG78_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DG78_9STRA)

HSP 1 Score: 108 bits (270), Expect = 7.050e-25
Identity = 53/122 (43.44%), Postives = 80/122 (65.57%), Query Frame = 0
Query:    1 DAWLWRVLTRQNIRTLGYTELAALMPAVLNEYTKPDLFTLYGPSEGVAKFIEELGPIASELSEVQIIEQVDQPIRLDGTLCGLVEGWANGC-DWSELVASTSLDQGDLCRIIRRSMEMLRQI 121
            + WL  +LT   +R L   ELA+L+ AV+ +YT+PD F  +GPS  V    E L  +A  L + Q+   VD P++L G+  GLVE WA+G   W++L +STS++QGD+C ++RR+ME+LR +
Sbjct:  956 ELWLALILTSPCVRRLSAPELASLISAVMIQYTRPDTFVAFGPSAAVTIAAESLRELAETLYDAQVEFDVDCPVQLAGSYAGLVESWASGLVTWNQLTSSTSMNQGDVCTMLRRTMEVLRSM 1077          
BLAST of mRNA_H-elongata_contig126911.1996.1 vs. uniprot
Match: A0A482SQ95_9ARCH (DSHCT domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SQ95_9ARCH)

HSP 1 Score: 102 bits (253), Expect = 3.540e-23
Identity = 52/123 (42.28%), Postives = 78/123 (63.41%), Query Frame = 0
Query:    1 DAWLWRVLTRQNIRTLGYTELAALMPAV-LNEYTKPDLFTLYGPSEGVAKFIEELGPIASELSEVQIIEQVDQPIRLDGTLCGLVEGWANGCDWSELVASTSLDQGDLCRIIRRSMEMLRQIP 122
            + WL  VL++ ++  L Y+E  AL+ A+ +  Y   + +     S+ +   IEEL P+ +ELS +Q    +D PI L   +CG+ E WA G  W +L ASTSLDQGDLCRI++R++E+L+QIP
Sbjct:  211 ELWLALVLSQSHLHNLTYSEFGALIAALNVESYRVENAYFKTSTSKPIQLAIEELKPVYAELSGLQDRHGLDFPIYLSPEICGIAEMWAKGATWRDLCASTSLDQGDLCRILKRTVEILKQIP 333          
BLAST of mRNA_H-elongata_contig126911.1996.1 vs. uniprot
Match: A0A0A2BKZ3_9CYAN (Uncharacterized protein n=1 Tax=Prochlorococcus sp. MIT 0602 TaxID=1499499 RepID=A0A0A2BKZ3_9CYAN)

HSP 1 Score: 99.8 bits (247), Expect = 8.730e-22
Identity = 49/122 (40.16%), Postives = 78/122 (63.93%), Query Frame = 0
Query:    1 DAWLWRVLTRQNIRTLGYTELAALMPAVLNEYTKPDLFTLYGPSEGVAKFIEELGPIASELSEVQIIEQVDQPIRLDGTLCGLVEGWANGCDWSELVASTSLDQGDLCRIIRRSMEMLRQIP 122
            + WL  VL   ++  L  ++LA ++ A+  E  +PD++T + PS    + + +L  +  EL  VQ    VD PI L+  + GLVE WANG  W++L+A+TSLD+GD+ RIIRR++++L Q+P
Sbjct:  753 ELWLGLVLMSGHLDELHPSQLAGVLQAISTEVNRPDIWTGFRPSSESLEALNDLSGVHRELLRVQQRFSVDVPIHLNPEMMGLVEKWANGSTWNDLIANTSLDEGDVVRIIRRTIDLLAQLP 874          
BLAST of mRNA_H-elongata_contig126911.1996.1 vs. uniprot
Match: R1D254_EMIHU (Helicase ATP-binding domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1D254_EMIHU)

HSP 1 Score: 99.4 bits (246), Expect = 1.200e-21
Identity = 51/121 (42.15%), Postives = 72/121 (59.50%), Query Frame = 0
Query:    1 DAWLWRVLTRQNIRTLGYTELAALMPAVLNEYTKPDLFTLYGPSEGVAKFIEELGPIASELSEVQIIEQVDQPIRLDGTLCGLVEGWANGCDWSELVASTSLDQGDLCRIIRRSMEMLRQI 121
            + WL  VL       L   +LAA++ A L+E  +P+ F  + PSE V + ++ L   A+EL   Q+   +  P+ LD  LCGLVE WA G  W  LVA TSLD GDL R++RRS+E+L+ +
Sbjct:  872 ELWLALVLMEAAAAELEPPQLAAVLAATLDERLRPNTFVRFAPSEAVYETVDVLADRAAELQRAQMAAGLSFPVGLDAGLCGLVEAWAAGEGWESLVAGTSLDLGDLFRLLRRSLELLKTV 992          
BLAST of mRNA_H-elongata_contig126911.1996.1 vs. uniprot
Match: R1CBT1_EMIHU (Helicase ATP-binding domain-containing protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1CBT1_EMIHU)

HSP 1 Score: 99.4 bits (246), Expect = 1.210e-21
Identity = 51/121 (42.15%), Postives = 72/121 (59.50%), Query Frame = 0
Query:    1 DAWLWRVLTRQNIRTLGYTELAALMPAVLNEYTKPDLFTLYGPSEGVAKFIEELGPIASELSEVQIIEQVDQPIRLDGTLCGLVEGWANGCDWSELVASTSLDQGDLCRIIRRSMEMLRQI 121
            + WL  VL       L   +LAA++ A L+E  +P+ F  + PSE V + ++ L   A+EL   Q+   +  P+ LD  LCGLVE WA G  W  LVA TSLD GDL R++RRS+E+L+ +
Sbjct:  956 ELWLALVLMEAAAAELEPPQLAAVLAATLDERLRPNTFVRFAPSEAVYETVDVLADRAAELQRAQMAAGLSFPVGLDAGLCGLVEAWAAGEGWESLVAGTSLDLGDLFRLLRRSLELLKTV 1076          
BLAST of mRNA_H-elongata_contig126911.1996.1 vs. uniprot
Match: A0A1Z3HIU5_9CYAN (Putative helicase HelY n=2 Tax=Halomicronema hongdechloris TaxID=1209493 RepID=A0A1Z3HIU5_9CYAN)

HSP 1 Score: 98.2 bits (243), Expect = 3.010e-21
Identity = 50/122 (40.98%), Postives = 71/122 (58.20%), Query Frame = 0
Query:    1 DAWLWRVLTRQNIRTLGYTELAALMPAVLNEYTKPDLFTLYGPSEGVAKFIEELGPIASELSEVQIIEQVDQPIRLDGTLCGLVEGWANGCDWSELVASTSLDQGDLCRIIRRSMEMLRQIP 122
            + WL   L       L   ELA    A++ E ++PD +T Y PS  V   +E L  +  EL + Q   QV  P+ ++  L GLVE WAN  +WSEL A+TSLD+GD+ R++RR+++ L QIP
Sbjct:  751 ELWLGLALASGEFERLSPAELATACAALVTENSRPDSWTRYAPSAAVESALEGLRSVRRELFQQQRRHQVVMPVWMEFELIGLVEQWANQLEWSELCANTSLDEGDIVRVLRRTLDFLAQIP 872          
BLAST of mRNA_H-elongata_contig126911.1996.1 vs. uniprot
Match: A0A0A2BHC3_9CYAN (Uncharacterized protein n=2 Tax=Prochlorococcus sp. MIT 0601 TaxID=1499498 RepID=A0A0A2BHC3_9CYAN)

HSP 1 Score: 95.5 bits (236), Expect = 2.640e-20
Identity = 46/122 (37.70%), Postives = 77/122 (63.11%), Query Frame = 0
Query:    1 DAWLWRVLTRQNIRTLGYTELAALMPAVLNEYTKPDLFTLYGPSEGVAKFIEELGPIASELSEVQIIEQVDQPIRLDGTLCGLVEGWANGCDWSELVASTSLDQGDLCRIIRRSMEMLRQIP 122
            + WL   L   ++  L  + LAA++ A+  +  +PDL++ Y  S    + + +L  I  EL+  Q  + +D P+  + TL GL+E WANG  W++L+A+TSLD+GD+ RIIRR++++L Q+P
Sbjct:  727 ELWLGLSLMSGHLDELKPSALAAVLEAISTDVNRPDLWSGYSASSQSIEALNDLAGIRRELTLQQKQKHIDIPLWWESTLMGLIEAWANGVHWTDLIANTSLDEGDIVRIIRRTIDLLSQVP 848          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig126911.1996.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L415_9PHAE4.490e-6379.03DSHCT domain-containing protein n=1 Tax=Ectocarpus... [more]
D7G373_ECTSI3.460e-6279.84DEAD box helicase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A835Z819_9STRA6.870e-3954.69Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2DG78_9STRA7.050e-2543.44Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A482SQ95_9ARCH3.540e-2342.28DSHCT domain-containing protein (Fragment) n=1 Tax... [more]
A0A0A2BKZ3_9CYAN8.730e-2240.16Uncharacterized protein n=1 Tax=Prochlorococcus sp... [more]
R1D254_EMIHU1.200e-2142.15Helicase ATP-binding domain-containing protein n=1... [more]
R1CBT1_EMIHU1.210e-2142.15Helicase ATP-binding domain-containing protein n=2... [more]
A0A1Z3HIU5_9CYAN3.010e-2140.98Putative helicase HelY n=2 Tax=Halomicronema hongd... [more]
A0A0A2BHC3_9CYAN2.640e-2037.70Uncharacterized protein n=2 Tax=Prochlorococcus sp... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012961ATP-dependent RNA helicase Ski2, C-terminalSMARTSM01142DSHCT_2coord: 9..130
e-value: 9.6E-9
score: 28.8
IPR012961ATP-dependent RNA helicase Ski2, C-terminalPFAMPF08148DSHCTcoord: 3..126
e-value: 6.1E-17
score: 61.8
NoneNo IPR availableGENE3D1.10.3380.30coord: 3..127
e-value: 1.9E-8
score: 36.0
NoneNo IPR availablePANTHERPTHR12131:SF8HELICASE SKI2Wcoord: 3..122
NoneNo IPR availablePANTHERPTHR12131ATP-DEPENDENT RNA AND DNA HELICASEcoord: 3..122

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig126911contigH-elongata_contig126911:437..1713 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig126911.1996.1mRNA_H-elongata_contig126911.1996.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig126911 437..1713 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig126911.1996.1 ID=prot_H-elongata_contig126911.1996.1|Name=mRNA_H-elongata_contig126911.1996.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=131bp
DAWLWRVLTRQNIRTLGYTELAALMPAVLNEYTKPDLFTLYGPSEGVAKF
IEELGPIASELSEVQIIEQVDQPIRLDGTLCGLVEGWANGCDWSELVAST
SLDQGDLCRIIRRSMEMLRQIPVLVRCDVT*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012961Ski2_C