mRNA_H-elongata_contig126911.1996.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig126911.1996.1 vs. uniprot
Match: A0A6H5L415_9PHAE (DSHCT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L415_9PHAE) HSP 1 Score: 213 bits (541), Expect = 4.490e-63 Identity = 98/124 (79.03%), Postives = 115/124 (92.74%), Query Frame = 1
Query: 1 DAWLWRVLTRQNIRTLGYTELAALMPAVLNEYTKPDLFTLYGPSEGVAKFIEELGPIASELSEVQIIEQVDQPIRLDGTLCGLVEGWANGCDWSELVASTSLDQGDLCRIIRRSMEMLRQIPVL 372
+ W+ VLTR++I LGYTELA+LMPA+LNEYT+PDLFTLYGPSEGV+ F+EEL P+ASELSE+Q++EQV+QP+RLD LCGLVEGWANGCDWSELVASTSLDQGDLCRI+RR+MEMLRQIPVL
Sbjct: 448 ELWMALVLTRKSILQLGYTELASLMPAILNEYTRPDLFTLYGPSEGVSAFLEELAPVASELSEIQMLEQVEQPVRLDSKLCGLVEGWANGCDWSELVASTSLDQGDLCRILRRAMEMLRQIPVL 571
BLAST of mRNA_H-elongata_contig126911.1996.1 vs. uniprot
Match: D7G373_ECTSI (DEAD box helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G373_ECTSI) HSP 1 Score: 215 bits (547), Expect = 3.460e-62 Identity = 99/124 (79.84%), Postives = 116/124 (93.55%), Query Frame = 1
Query: 1 DAWLWRVLTRQNIRTLGYTELAALMPAVLNEYTKPDLFTLYGPSEGVAKFIEELGPIASELSEVQIIEQVDQPIRLDGTLCGLVEGWANGCDWSELVASTSLDQGDLCRIIRRSMEMLRQIPVL 372
+ W+ VLTR++I LGYTELA+LMPA+LNEYT+PDLFTLYGPSEGV+ F+EEL P+ASELSE+Q++EQV+QP+RLDG LCGLVEGWANGCDWSELVASTSLDQGDLCRI+RR+MEMLRQIPVL
Sbjct: 1186 ELWMALVLTRKSILQLGYTELASLMPAILNEYTRPDLFTLYGPSEGVSAFLEELAPVASELSEIQMLEQVEQPVRLDGKLCGLVEGWANGCDWSELVASTSLDQGDLCRILRRAMEMLRQIPVL 1309
BLAST of mRNA_H-elongata_contig126911.1996.1 vs. uniprot
Match: A0A835Z819_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z819_9STRA) HSP 1 Score: 148 bits (374), Expect = 6.870e-39 Identity = 70/128 (54.69%), Postives = 96/128 (75.00%), Query Frame = 1
Query: 1 DAWLWRVLTRQNIRTLGYTELAALMPAVLNEYTKPDLFTLYGPSEGVAKFIEELGPIASELSEVQIIEQVDQPIRLDGTLCGLVEGWANGCDWSELVASTSLDQGDLCRIIRRSMEMLRQIPVLVRCD 384
+ WL VLT I+ L +LA L+PA+++EY++PD+F LYG SE V+ +E L P+A+EL+ VQ+ VD P++LD +L GLVE WA GCDW+EL ASTSLDQGD+CR++RR+ME+LRQI +L D
Sbjct: 1004 ELWLALVLTSSAIKALSDVQLAGLVPAIISEYSRPDMFNLYGVSEEVSLCVEALVPLATELTTVQLENAVDLPVKLDASLGGLVESWALGCDWAELCASTSLDQGDICRLLRRTMEVLRQIALLPGVD 1131
BLAST of mRNA_H-elongata_contig126911.1996.1 vs. uniprot
Match: A0A7S2DG78_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DG78_9STRA) HSP 1 Score: 108 bits (270), Expect = 7.050e-25 Identity = 53/122 (43.44%), Postives = 80/122 (65.57%), Query Frame = 1
Query: 1 DAWLWRVLTRQNIRTLGYTELAALMPAVLNEYTKPDLFTLYGPSEGVAKFIEELGPIASELSEVQIIEQVDQPIRLDGTLCGLVEGWANGC-DWSELVASTSLDQGDLCRIIRRSMEMLRQI 363
+ WL +LT +R L ELA+L+ AV+ +YT+PD F +GPS V E L +A L + Q+ VD P++L G+ GLVE WA+G W++L +STS++QGD+C ++RR+ME+LR +
Sbjct: 956 ELWLALILTSPCVRRLSAPELASLISAVMIQYTRPDTFVAFGPSAAVTIAAESLRELAETLYDAQVEFDVDCPVQLAGSYAGLVESWASGLVTWNQLTSSTSMNQGDVCTMLRRTMEVLRSM 1077
BLAST of mRNA_H-elongata_contig126911.1996.1 vs. uniprot
Match: A0A482SQ95_9ARCH (DSHCT domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SQ95_9ARCH) HSP 1 Score: 102 bits (253), Expect = 3.540e-23 Identity = 52/123 (42.28%), Postives = 78/123 (63.41%), Query Frame = 1
Query: 1 DAWLWRVLTRQNIRTLGYTELAALMPAV-LNEYTKPDLFTLYGPSEGVAKFIEELGPIASELSEVQIIEQVDQPIRLDGTLCGLVEGWANGCDWSELVASTSLDQGDLCRIIRRSMEMLRQIP 366
+ WL VL++ ++ L Y+E AL+ A+ + Y + + S+ + IEEL P+ +ELS +Q +D PI L +CG+ E WA G W +L ASTSLDQGDLCRI++R++E+L+QIP
Sbjct: 211 ELWLALVLSQSHLHNLTYSEFGALIAALNVESYRVENAYFKTSTSKPIQLAIEELKPVYAELSGLQDRHGLDFPIYLSPEICGIAEMWAKGATWRDLCASTSLDQGDLCRILKRTVEILKQIP 333
BLAST of mRNA_H-elongata_contig126911.1996.1 vs. uniprot
Match: A0A0A2BKZ3_9CYAN (Uncharacterized protein n=1 Tax=Prochlorococcus sp. MIT 0602 TaxID=1499499 RepID=A0A0A2BKZ3_9CYAN) HSP 1 Score: 99.8 bits (247), Expect = 8.730e-22 Identity = 49/122 (40.16%), Postives = 78/122 (63.93%), Query Frame = 1
Query: 1 DAWLWRVLTRQNIRTLGYTELAALMPAVLNEYTKPDLFTLYGPSEGVAKFIEELGPIASELSEVQIIEQVDQPIRLDGTLCGLVEGWANGCDWSELVASTSLDQGDLCRIIRRSMEMLRQIP 366
+ WL VL ++ L ++LA ++ A+ E +PD++T + PS + + +L + EL VQ VD PI L+ + GLVE WANG W++L+A+TSLD+GD+ RIIRR++++L Q+P
Sbjct: 753 ELWLGLVLMSGHLDELHPSQLAGVLQAISTEVNRPDIWTGFRPSSESLEALNDLSGVHRELLRVQQRFSVDVPIHLNPEMMGLVEKWANGSTWNDLIANTSLDEGDVVRIIRRTIDLLAQLP 874
BLAST of mRNA_H-elongata_contig126911.1996.1 vs. uniprot
Match: R1D254_EMIHU (Helicase ATP-binding domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1D254_EMIHU) HSP 1 Score: 99.4 bits (246), Expect = 1.200e-21 Identity = 51/121 (42.15%), Postives = 72/121 (59.50%), Query Frame = 1
Query: 1 DAWLWRVLTRQNIRTLGYTELAALMPAVLNEYTKPDLFTLYGPSEGVAKFIEELGPIASELSEVQIIEQVDQPIRLDGTLCGLVEGWANGCDWSELVASTSLDQGDLCRIIRRSMEMLRQI 363
+ WL VL L +LAA++ A L+E +P+ F + PSE V + ++ L A+EL Q+ + P+ LD LCGLVE WA G W LVA TSLD GDL R++RRS+E+L+ +
Sbjct: 872 ELWLALVLMEAAAAELEPPQLAAVLAATLDERLRPNTFVRFAPSEAVYETVDVLADRAAELQRAQMAAGLSFPVGLDAGLCGLVEAWAAGEGWESLVAGTSLDLGDLFRLLRRSLELLKTV 992
BLAST of mRNA_H-elongata_contig126911.1996.1 vs. uniprot
Match: R1CBT1_EMIHU (Helicase ATP-binding domain-containing protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1CBT1_EMIHU) HSP 1 Score: 99.4 bits (246), Expect = 1.210e-21 Identity = 51/121 (42.15%), Postives = 72/121 (59.50%), Query Frame = 1
Query: 1 DAWLWRVLTRQNIRTLGYTELAALMPAVLNEYTKPDLFTLYGPSEGVAKFIEELGPIASELSEVQIIEQVDQPIRLDGTLCGLVEGWANGCDWSELVASTSLDQGDLCRIIRRSMEMLRQI 363
+ WL VL L +LAA++ A L+E +P+ F + PSE V + ++ L A+EL Q+ + P+ LD LCGLVE WA G W LVA TSLD GDL R++RRS+E+L+ +
Sbjct: 956 ELWLALVLMEAAAAELEPPQLAAVLAATLDERLRPNTFVRFAPSEAVYETVDVLADRAAELQRAQMAAGLSFPVGLDAGLCGLVEAWAAGEGWESLVAGTSLDLGDLFRLLRRSLELLKTV 1076
BLAST of mRNA_H-elongata_contig126911.1996.1 vs. uniprot
Match: A0A1Z3HIU5_9CYAN (Putative helicase HelY n=2 Tax=Halomicronema hongdechloris TaxID=1209493 RepID=A0A1Z3HIU5_9CYAN) HSP 1 Score: 98.2 bits (243), Expect = 3.010e-21 Identity = 50/122 (40.98%), Postives = 71/122 (58.20%), Query Frame = 1
Query: 1 DAWLWRVLTRQNIRTLGYTELAALMPAVLNEYTKPDLFTLYGPSEGVAKFIEELGPIASELSEVQIIEQVDQPIRLDGTLCGLVEGWANGCDWSELVASTSLDQGDLCRIIRRSMEMLRQIP 366
+ WL L L ELA A++ E ++PD +T Y PS V +E L + EL + Q QV P+ ++ L GLVE WAN +WSEL A+TSLD+GD+ R++RR+++ L QIP
Sbjct: 751 ELWLGLALASGEFERLSPAELATACAALVTENSRPDSWTRYAPSAAVESALEGLRSVRRELFQQQRRHQVVMPVWMEFELIGLVEQWANQLEWSELCANTSLDEGDIVRVLRRTLDFLAQIP 872
BLAST of mRNA_H-elongata_contig126911.1996.1 vs. uniprot
Match: A0A0A2BHC3_9CYAN (Uncharacterized protein n=2 Tax=Prochlorococcus sp. MIT 0601 TaxID=1499498 RepID=A0A0A2BHC3_9CYAN) HSP 1 Score: 95.5 bits (236), Expect = 2.640e-20 Identity = 46/122 (37.70%), Postives = 77/122 (63.11%), Query Frame = 1
Query: 1 DAWLWRVLTRQNIRTLGYTELAALMPAVLNEYTKPDLFTLYGPSEGVAKFIEELGPIASELSEVQIIEQVDQPIRLDGTLCGLVEGWANGCDWSELVASTSLDQGDLCRIIRRSMEMLRQIP 366
+ WL L ++ L + LAA++ A+ + +PDL++ Y S + + +L I EL+ Q + +D P+ + TL GL+E WANG W++L+A+TSLD+GD+ RIIRR++++L Q+P
Sbjct: 727 ELWLGLSLMSGHLDELKPSALAAVLEAISTDVNRPDLWSGYSASSQSIEALNDLAGIRRELTLQQKQKHIDIPLWWESTLMGLIEAWANGVHWTDLIANTSLDEGDIVRIIRRTIDLLSQVP 848 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig126911.1996.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig126911.1996.1 >prot_H-elongata_contig126911.1996.1 ID=prot_H-elongata_contig126911.1996.1|Name=mRNA_H-elongata_contig126911.1996.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=131bp DAWLWRVLTRQNIRTLGYTELAALMPAVLNEYTKPDLFTLYGPSEGVAKFback to top mRNA from alignment at H-elongata_contig126911:437..1713- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig126911.1996.1 ID=mRNA_H-elongata_contig126911.1996.1|Name=mRNA_H-elongata_contig126911.1996.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1277bp|location=Sequence derived from alignment at H-elongata_contig126911:437..1713- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig126911:437..1713- >mRNA_H-elongata_contig126911.1996.1 ID=mRNA_H-elongata_contig126911.1996.1|Name=mRNA_H-elongata_contig126911.1996.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=786bp|location=Sequence derived from alignment at H-elongata_contig126911:437..1713- (Himanthalia elongata Himel1 dioecious)back to top |