mRNA_H-elongata_contig126848.1992.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig126848.1992.1
Unique NamemRNA_H-elongata_contig126848.1992.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig126848.1992.1 vs. uniprot
Match: D7G3C0_ECTSI (Sorting and Assembly Machinery 50kDa protein (N-terminal) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3C0_ECTSI)

HSP 1 Score: 209 bits (531), Expect = 1.140e-63
Identity = 94/113 (83.19%), Postives = 101/113 (89.38%), Query Frame = 1 
Query:    1 RPLGSCKRTHFSDRFNLGGPMSLRGFPFYGVGPRAPKEEGGCPGGDALGGDIRYSASASLGFPXXXPSMANAGWRGYVFTNLGNLTTWDTPLAQYARDTRVSVGLAAAWNFMG 339
            RP G  KRT FSDRFNLGGPM+LRGFPFYG GPR+PKEEGGC GGDALGGDIRY+ASASLGFP   P+MA AGWRGY+FTNLGNLTTWDTPL QY RDTRVSVG+AAAWNF+G
Sbjct:  305 RPFGPSKRTFFSDRFNLGGPMTLRGFPFYGAGPRSPKEEGGCEGGDALGGDIRYTASASLGFPFPVPAMATAGWRGYLFTNLGNLTTWDTPLKQYGRDTRVSVGVAAAWNFLG 417
[Close]
BLAST of mRNA_H-elongata_contig126848.1992.1 vs. uniprot
Match: A0A2D4BF57_PYTIN (Sorting and assembly machinery component 50 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BF57_PYTIN)

HSP 1 Score: 118 bits (295), Expect = 2.020e-28
Identity = 61/119 (51.26%), Postives = 74/119 (62.18%), Query Frame = 1 
Query:   25 THFSDRFNLGGPMSLRGFPFYGVGPRAPKEEGGCPGGDALGGDIRYSASASLGFPXXXPSMANAGWRGYVFTNLGNLTTWDTPLAQ------YARDTRVSVGLAAAWNF-MGEVVFAYS 360
            T  SDRF LGGP+S+RGF   G+GPRA   +GG   GDALGGD+ Y+ASAS+GFP   P MA  G RG +F N GNLTTW   L +         DTRVSVG+   W   +G +  +YS
Sbjct:  278 TRLSDRFFLGGPLSVRGFHHKGIGPRASPNDGGVKSGDALGGDVSYTASASMGFPLPVPLMAMLGMRGQIFANAGNLTTWSRLLNEKKWMKHLVDDTRVSVGVGIVWGTSIGRIEASYS 396
[Close]
BLAST of mRNA_H-elongata_contig126848.1992.1 vs. uniprot
Match: A0A2D4CD39_PYTIN (Sorting and assembly machinery component 50 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CD39_PYTIN)

HSP 1 Score: 117 bits (292), Expect = 5.010e-28
Identity = 61/119 (51.26%), Postives = 73/119 (61.34%), Query Frame = 1 
Query:   25 THFSDRFNLGGPMSLRGFPFYGVGPRAPKEEGGCPGGDALGGDIRYSASASLGFPXXXPSMANAGWRGYVFTNLGNLTTWDTPLAQ------YARDTRVSVGLAAAWNF-MGEVVFAYS 360
            T  SDRF LGGP+S+RGF   G+GPRA   +GG   GDALGGD+ Y+ASAS+GFP   P MA  G RG +F N GNLTTW   L +         DTRVSVG+   W   +G +   YS
Sbjct:  300 TRLSDRFFLGGPLSVRGFHHKGIGPRASPNDGGVKSGDALGGDVSYTASASMGFPLPVPLMAMLGMRGQIFANAGNLTTWSRLLNEKKWMKHLVDDTRVSVGVGIVWGTSIGRIEANYS 418
[Close]
BLAST of mRNA_H-elongata_contig126848.1992.1 vs. uniprot
Match: A0A8K1CC02_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CC02_PYTOL)

HSP 1 Score: 114 bits (286), Expect = 1.210e-27
Identity = 59/119 (49.58%), Postives = 74/119 (62.18%), Query Frame = 1 
Query:   25 THFSDRFNLGGPMSLRGFPFYGVGPRAPKEEGGCPGGDALGGDIRYSASASLGFPXXXPSMANAGWRGYVFTNLGNLTTWDTPLAQ------YARDTRVSVGLAAAWNF-MGEVVFAYS 360
            T  SDRF LGGP+S+RGF   G+GPRA   +GG   GD+LGGD+ Y+A+AS+GFP   P MA  G RG+VF N+GNLTTW   L +         DTR SVG+   W   +G +   YS
Sbjct:  320 TRLSDRFFLGGPLSVRGFNHKGIGPRASPNDGGSKWGDSLGGDVSYTATASMGFPLPVPLMAMLGMRGHVFANVGNLTTWSRLLDEKKWMKHLVDDTRASVGVGIVWGTSIGRIEANYS 438
[Close]
BLAST of mRNA_H-elongata_contig126848.1992.1 vs. uniprot
Match: A0A484DQ43_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DQ43_BRELC)

HSP 1 Score: 114 bits (284), Expect = 2.320e-27
Identity = 55/108 (50.93%), Postives = 68/108 (62.96%), Query Frame = 1 
Query:   25 THFSDRFNLGGPMSLRGFPFYGVGPRAPKEEGGCPGGDALGGDIRYSASASLGFPXXXPSMANAGWRGYVFTNLGNLTTWDTPLAQ------YARDTRVSVGLAAAWN 330
               SDRF LGGPMSLRGF + G+GPR+  E+GG   GDALGGD+ Y  +AS+GFP   P ++  G RG +F N GNLTTWD  L +         DTRVS+G+   W 
Sbjct:  320 ARISDRFFLGGPMSLRGFNYKGIGPRSSPEDGGVAQGDALGGDVSYHGTASVGFPVPLPLLSALGLRGQLFANAGNLTTWDRVLDENQWMKNLVDDTRVSIGMGLVWG 427
[Close]
BLAST of mRNA_H-elongata_contig126848.1992.1 vs. uniprot
Match: A0A3M6VD75_9STRA (Omp85 domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VD75_9STRA)

HSP 1 Score: 114 bits (285), Expect = 4.230e-27
Identity = 58/108 (53.70%), Postives = 68/108 (62.96%), Query Frame = 1 
Query:   25 THFSDRFNLGGPMSLRGFPFYGVGPRAPKEEGGCPGGDALGGDIRYSASASLGFPXXXPSMANAGWRGYVFTNLGNLTTWDTPLAQ------YARDTRVSVGLAAAWN 330
               SDRF LGGPM++RGF   G+GPRA   +GG P GDALGGDI Y+ +AS+GFP   P +A  G RG VF N GNLTTWD  L +       A D RVSVG+   W 
Sbjct:   70 ARISDRFFLGGPMNVRGFNHKGIGPRASPLDGGVPQGDALGGDISYNGTASMGFPVPLPLLAALGLRGQVFANAGNLTTWDRLLDEKKWMKNLADDMRVSVGMGLVWG 177
[Close]
BLAST of mRNA_H-elongata_contig126848.1992.1 vs. uniprot
Match: A0A024G521_9STRA (Omp85 domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G521_9STRA)

HSP 1 Score: 114 bits (285), Expect = 4.660e-27
Identity = 57/103 (55.34%), Postives = 70/103 (67.96%), Query Frame = 1 
Query:   25 THFSDRFNLGGPMSLRGFPFYGVGPRAPKEEGGCPGGDALGGDIRYSASASLGFPXXXPSMANAGWRGYVFTNLGNLTTWDTPLAQ------YARDTRVSVGL 315
            +  SDRF LGGP+SLRGF F GVGPRA   +GG P GDALGGD+ Y+ASA +GFP   P +A  G RG VF ++GNLTTWD  L +         DTR+S+G+
Sbjct: 1417 SRISDRFFLGGPLSLRGFHFKGVGPRASPAQGGFPSGDALGGDVFYTASAHIGFPFPFPVLATLGLRGQVFGSIGNLTTWDRVLNKKRWMRNLVSDTRLSIGM 1519
[Close]
BLAST of mRNA_H-elongata_contig126848.1992.1 vs. uniprot
Match: F0W4E7_9STRA (Sorting and assembly machinery component 50 putativ n=10 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W4E7_9STRA)

HSP 1 Score: 114 bits (285), Expect = 4.680e-27
Identity = 57/103 (55.34%), Postives = 71/103 (68.93%), Query Frame = 1 
Query:   25 THFSDRFNLGGPMSLRGFPFYGVGPRAPKEEGGCPGGDALGGDIRYSASASLGFPXXXPSMANAGWRGYVFTNLGNLTTWDTPLAQ------YARDTRVSVGL 315
            +  SDRF LGGP+SLRGF + GVGPRA   +GG P GD+LGGD+ Y+ASA +GFP   P +A  G RG VF ++GNLTTWD  L +       A DTRVS+G+
Sbjct: 1522 SRISDRFFLGGPLSLRGFHYKGVGPRASPTQGGVPSGDSLGGDLFYTASAHVGFPFPFPMLAMLGLRGQVFGSIGNLTTWDRVLHKKRWMRNLANDTRVSIGM 1624
[Close]
BLAST of mRNA_H-elongata_contig126848.1992.1 vs. uniprot
Match: M4BJR2_HYAAE (Omp85 domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BJR2_HYAAE)

HSP 1 Score: 112 bits (281), Expect = 7.070e-27
Identity = 58/108 (53.70%), Postives = 67/108 (62.04%), Query Frame = 1 
Query:   25 THFSDRFNLGGPMSLRGFPFYGVGPRAPKEEGGCPGGDALGGDIRYSASASLGFPXXXPSMANAGWRGYVFTNLGNLTTWDTPLAQ------YARDTRVSVGLAAAWN 330
               SDRF LGGPM++RGF   G+GPRA   +GG   GDALGGD+ Y  +AS+GFP   P  A  G RG VF N+GNLTTWD  L +       A DTRVSVGL   W 
Sbjct:  336 ARISDRFFLGGPMNVRGFNHKGIGPRASPLDGGVVQGDALGGDVSYRGTASMGFPVPLPLFAALGLRGQVFANVGNLTTWDRLLDEKKWMKNLADDTRVSVGLGLVWG 443
[Close]
BLAST of mRNA_H-elongata_contig126848.1992.1 vs. uniprot
Match: K3W6Z5_GLOUD (Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4782 RepID=K3W6Z5_GLOUD)

HSP 1 Score: 110 bits (275), Expect = 3.670e-26
Identity = 57/108 (52.78%), Postives = 66/108 (61.11%), Query Frame = 1 
Query:   25 THFSDRFNLGGPMSLRGFPFYGVGPRAPKEEGGCPGGDALGGDIRYSASASLGFPXXXPSMANAGWRGYVFTNLGNLTTWDTPLAQ------YARDTRVSVGLAAAWN 330
               SDRF LGGPMSLRGF   GVGPRA   +GG   GD+LGG++ Y+ SAS+GFP   P +A  G RG  F N GNLTTW   L +       A DTRVSVG+   W 
Sbjct:  300 ARISDRFFLGGPMSLRGFNHKGVGPRASPRDGGVAAGDSLGGELSYNGSASVGFPCPMPLLAMLGIRGQFFANAGNLTTWGRLLDEKKWMKNLADDTRVSVGMGLVWG 407
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig126848.1992.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3C0_ECTSI1.140e-6383.19Sorting and Assembly Machinery 50kDa protein (N-te... [more]
A0A2D4BF57_PYTIN2.020e-2851.26Sorting and assembly machinery component 50 n=1 Ta... [more]
A0A2D4CD39_PYTIN5.010e-2851.26Sorting and assembly machinery component 50 n=1 Ta... [more]
A0A8K1CC02_PYTOL1.210e-2749.58Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A484DQ43_BRELC2.320e-2750.93Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A3M6VD75_9STRA4.230e-2753.70Omp85 domain-containing protein n=2 Tax=Peronospor... [more]
A0A024G521_9STRA4.660e-2755.34Omp85 domain-containing protein n=1 Tax=Albugo can... [more]
F0W4E7_9STRA4.680e-2755.34Sorting and assembly machinery component 50 putati... [more]
M4BJR2_HYAAE7.070e-2753.70Omp85 domain-containing protein n=1 Tax=Hyaloperon... [more]
K3W6Z5_GLOUD3.670e-2652.78Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig126848contigH-elongata_contig126848:72..1071 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score211.1
Seed ortholog evalue2.9e-52
Seed eggNOG ortholog2880.D7G3C0
Preferred nameSAM50
KEGG koko:K07277
KEGG TC1.B.33
GOsGO:0001401,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0006605,GO:0006626,GO:0006810,GO:0006839,GO:0006886,GO:0006996,GO:0007005,GO:0007006,GO:0007007,GO:0008104,GO:0008150,GO:0009987,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0017038,GO:0019867,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031306,GO:0031307,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0032592,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0042407,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045040,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061024,GO:0070585,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0072594,GO:0072655,GO:0072657,GO:0090150,GO:0090151,GO:0098573,GO:0098588,GO:0098796,GO:0098798,GO:0098799,GO:0098805
EggNOG free text desc.sorting and assembly machinery component
EggNOG OGsCOG4775@1,KOG2602@2759
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000,ko03029
Hectar predicted targeting categoryother localisation
Exons2
Model size363
Cds size363
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929751.6384468-CDS-H-elongata_contig126848:71..2681622929751.6384468-CDS-H-elongata_contig126848:71..268Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig126848 72..268 -
1691679143.6366699-CDS-H-elongata_contig126848:71..2681691679143.6366699-CDS-H-elongata_contig126848:71..268Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig126848 72..268 -
1622929751.6515417-CDS-H-elongata_contig126848:905..10711622929751.6515417-CDS-H-elongata_contig126848:905..1071Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig126848 906..1071 -
1691679143.6488109-CDS-H-elongata_contig126848:905..10711691679143.6488109-CDS-H-elongata_contig126848:905..1071Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig126848 906..1071 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig126848.1992.1prot_H-elongata_contig126848.1992.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig126848 72..1071 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig126848.1992.1

>prot_H-elongata_contig126848.1992.1 ID=prot_H-elongata_contig126848.1992.1|Name=mRNA_H-elongata_contig126848.1992.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=121bp
RPLGSCKRTHFSDRFNLGGPMSLRGFPFYGVGPRAPKEEGGCPGGDALGG
DIRYSASASLGFPFPFPSMANAGWRGYVFTNLGNLTTWDTPLAQYARDTR
VSVGLAAAWNFMGEVVFAYS*
back to top

mRNA from alignment at H-elongata_contig126848:72..1071-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig126848.1992.1 ID=mRNA_H-elongata_contig126848.1992.1|Name=mRNA_H-elongata_contig126848.1992.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1000bp|location=Sequence derived from alignment at H-elongata_contig126848:72..1071- (Himanthalia elongata Himel1 dioecious)
AGACCGCTGGGATCTTGCAAGCGCACGCACTTCAGTGACCGATTTAATCT
GGGGGGTCCTATGAGCCTTCGAGGCTTTCCCTTTTACGGAGTCGGGCCGC
GAGCGCCGAAGGAAGAGGGTGGTTGCCCAGGGGGTGATGCGTTGGGCGGC
GACATCAGGTATTCAGGTACGCCTCGATGGTGGATTGGTTGATCAATTGG
TTGGTTAGTGTAGAGGGGGGGGAATGAGAGTTATAATGAGGCGTTTTCGG
GGGGCGGGTAGTAGACAACAGTCTGTTTCCATTTCGAGCGATTCCTGGGA
CGTTTGCATATCGCGAGCAGTACACACGGCGAGACAGGGAGGATTGATGT
GCTGCTCGAAGGCGTTTGCGGTCGCTTAGGAGCCTTGGGTGCCTCAACGG
GAAATCATCTTTGTGTTGATGAGATGCCAAGATGCTTTCCAAGACATACG
CTGGTGTATATTTTTTTTAATCAACCGCTGGGCGTGATTGGTATCTAGCT
ATATATATATATATGGTAGACCATTTGCATGTTCGCCTCGTTCGTTCCCT
CCTCGTCAGACCACGAGTAACCGAGATTAGCGACCAACTTTTAGCGTATA
TATACAGTTCCCATAGCTCGCGTTGACAATCAGTTGGCAATCAATTAGTA
GCTGAAAAGTGAGACAAGAACAGACATGTAGCCTCTTCCCCAGCAACCCG
CTTATCTACCACAACAGCGCAACTTGCGTCGTGAACAATTCAGGCTCTCA
CACGGTGGTATATAATTTTCCGGTATCCGCCCCCCTCTCCTCGGTCACGA
CAGCCTCGGCCTCTCTGGGGTTTCCATTTCCGTTCCCATCAATGGCGAAC
GCGGGGTGGCGGGGATACGTGTTCACTAACCTGGGGAATCTCACCACGTG
GGACACGCCCTTGGCGCAGTACGCTCGGGACACGAGGGTCTCCGTCGGGT
TGGCCGCGGCGTGGAATTTTATGGGTGAGGTTGTCTTTGCTTATTCTTAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig126848:72..1071-

>mRNA_H-elongata_contig126848.1992.1 ID=mRNA_H-elongata_contig126848.1992.1|Name=mRNA_H-elongata_contig126848.1992.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=726bp|location=Sequence derived from alignment at H-elongata_contig126848:72..1071- (Himanthalia elongata Himel1 dioecious)
AGACCGCTGGGATCTTGCAAGCGCACGCACTTCAGTGACCGATTTAATCT
GGGGGGTCCTATGAGCCTTCGAGGCTTTCCCTTTTACGGAGTCGGGCCGC
GAGCGCCGAAGGAAGAGGGTGGTTGCCCAGGGGGTGATGCGTTGGGCGGC
GACATCAGGTATTCAGAGACCGCTGGGATCTTGCAAGCGCACGCACTTCA
GTGACCGATTTAATCTGGGGGGTCCTATGAGCCTTCGAGGCTTTCCCTTT
TACGGAGTCGGGCCGCGAGCGCCGAAGGAAGAGGGTGGTTGCCCAGGGGG
TGATGCGTTGGGCGGCGACATCAGGTATTCAGCCTCGGCCTCTCTGGGGT
TTCCATTTCCGTTCCCATCAATGGCGAACGCGGGGTGGCGGGGATACGTG
TTCACTAACCTGGGGAATCTCACCACGTGGGACACGCCCTTGGCGCAGTA
CGCTCGGGACACGAGGGTCTCCGTCGGGTTGGCCGCGGCGTGGAATTTTA
TGGGTGAGGTTGTCTTTGCTTATTCTTAACCTCGGCCTCTCTGGGGTTTC
CATTTCCGTTCCCATCAATGGCGAACGCGGGGTGGCGGGGATACGTGTTC
ACTAACCTGGGGAATCTCACCACGTGGGACACGCCCTTGGCGCAGTACGC
TCGGGACACGAGGGTCTCCGTCGGGTTGGCCGCGGCGTGGAATTTTATGG
GTGAGGTTGTCTTTGCTTATTCTTAA
back to top