mRNA_H-elongata_contig102251.199.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig102251.199.1
Unique NamemRNA_H-elongata_contig102251.199.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig102251.199.1 vs. uniprot
Match: A0A6H5JB99_9PHAE (Complex1_LYR_dom domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB99_9PHAE)

HSP 1 Score: 150 bits (380), Expect = 1.220e-39
Identity = 78/106 (73.58%), Postives = 89/106 (83.96%), Query Frame = 1 
Query:  139 ALGLKEFMHRKRMLDLYRGILKRARELEDKDVAAQARRQFKLSQEETDPLKIKMAIADATMHLEALQGAVRSGAAVAGAGGGESWLDIDDPDDKRGRVGTGFPWER 456
            ALGLKEFMHR R+L+LYRGILKRAR LEDKDVA +ARRQFK    ETDPLK++M +ADAT HLEA+QG+ R GA   G GGG+SWLDI DP+DKRGRVG GFPW+R
Sbjct:  110 ALGLKEFMHRARVLELYRGILKRARALEDKDVADEARRQFKSCLGETDPLKVQMMVADATNHLEAMQGSTR-GAGSGGRGGGDSWLDIHDPEDKRGRVGEGFPWQR 214
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BLAST of mRNA_H-elongata_contig102251.199.1 vs. uniprot
Match: D8LRC8_ECTSI (Complex1_LYR_dom domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRC8_ECTSI)

HSP 1 Score: 132 bits (331), Expect = 5.330e-34
Identity = 68/99 (68.69%), Postives = 80/99 (80.81%), Query Frame = 1 
Query:  160 MHRKRMLDLYRGILKRARELEDKDVAAQARRQFKLSQEETDPLKIKMAIADATMHLEALQGAVRSGAAVAGAGGGESWLDIDDPDDKRGRVGTGFPWER 456
            MHR R+L+LYRGILKRAR LEDKDVA +AR+QFK    ETDPLK++M +ADAT HLEA+QG+ R GA   G GG  SWLDI DP+DKRGRVG GFPW++
Sbjct:    1 MHRARVLELYRGILKRARALEDKDVADEARKQFKSCLGETDPLKVQMMVADATNHLEAMQGSTR-GAGSGGGGGDHSWLDIHDPEDKRGRVGKGFPWQQ 98
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BLAST of mRNA_H-elongata_contig102251.199.1 vs. uniprot
Match: A0A835YQF9_9STRA (Complex1_LYR_dom domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQF9_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 1.330e-18
Identity = 50/108 (46.30%), Postives = 75/108 (69.44%), Query Frame = 1 
Query:  148 LKEFMHRKRMLDLYRGILKRARELEDK----DVAAQARRQFKLSQEETDPLKIKMAIADATMHLEALQGAV-RSGAAVAGAGGGESWLDIDDPDDKRGRVGTGFPWER 456
            LK+F+ ++++L  YR +LK AR +ED+    +VAAQ R +++    ETD LK++M +A+A  H++ LQG V R+   +    G  SWLD+DDP+D+RGRVG GFPW+R
Sbjct:   31 LKDFVRKRQVLHSYRQLLKCARAMEDRPSGQEVAAQVRERYRAYAHETDSLKLRMLLAEAAQHIDTLQGTVARTSPDMPPPPG--SWLDVDDPEDRRGRVGVGFPWQR 136
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BLAST of mRNA_H-elongata_contig102251.199.1 vs. uniprot
Match: A0A7S2K2A3_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K2A3_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 3.420e-10
Identity = 45/109 (41.28%), Postives = 60/109 (55.05%), Query Frame = 1 
Query:  148 LKEFMHRKRMLDLYRGILKRARELEDKD-----VAAQARRQFKLSQEETDPLKIKMAIADATMHLEALQGAV--RSGAAVAGAGGGESWLDIDDPDDKRGRVGTGFPWE 453
            LKEFMHR R++  YR  L+  R + + D     VA + R  F+L   ETD L + MA+ D    L  LQ  V  +    V  +G  +SWL+I D  D+RGRVG  +PWE
Sbjct:   35 LKEFMHRSRVIKQYRSYLRAIRCIPEDDAWREQVAREIRDSFRLKATETDKLSVTMAVTDGDRKLVQLQSMVGYQQKNDVNDSGDNDSWLNIVDEGDQRGRVGMQWPWE 143
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BLAST of mRNA_H-elongata_contig102251.199.1 vs. uniprot
Match: A0A482SDI4_9ARCH (LYR motif-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SDI4_9ARCH)

HSP 1 Score: 67.0 bits (162), Expect = 5.150e-10
Identity = 39/111 (35.14%), Postives = 61/111 (54.95%), Query Frame = 1 
Query:  130 MGGALGLKEFMHRKRMLDLYRGILKRARELED----KDVAAQARRQFKLSQEETDPLKIKMAIADATMHLEALQGAVRSGAAVAGAGGGESWLDIDDPDDKRGRVGTGFPW 450
            +G  L L+ F+ RK++L LYR +++ A  + D    +D+ +Q R  F+ +    D L IK  I +   +L+ LQG     +         SW++ +DP DKRGRVG G+PW
Sbjct:    6 LGETLPLRFFIRRKQVLSLYRNLIRNATRVHDESVQRDIISQIRTDFRRNAHVQDSLVIKSLIQEGNSNLKILQGMAYKDSKAHSIRAQGSWIEQEDPVDKRGRVGEGWPW 116
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BLAST of mRNA_H-elongata_contig102251.199.1 vs. uniprot
Match: A0A7S1Z286_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1Z286_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 3.330e-6
Identity = 38/107 (35.51%), Postives = 56/107 (52.34%), Query Frame = 1 
Query:  148 LKEFMHRKRMLDLYRGILKRARELEDKDVAAQARRQ----FKLSQEETDPLKIKMAIADATMHLEALQGAVRSGAAVAGAGGGESWLDIDDPDDKRGRVGTGFPWER 456
            +KEF+HR+ +   YR  LK  +        A+A R+    F++   ET+P+ I+MA+ D    L  +Q  V            +SWL+I D  D+RGRVG  +PWER
Sbjct:   72 MKEFLHRQTVTHQYRSFLKAVKLFPKGTEQAEAFREVKSAFRVCSRETNPISIRMAVTDGQRKLAQVQSLVGY---QPSNNDEDSWLNIKDDLDQRGRVGVQWPWER 175
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BLAST of mRNA_H-elongata_contig102251.199.1 vs. uniprot
Match: A0A7S2XK87_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XK87_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 2.450e-5
Identity = 37/107 (34.58%), Postives = 55/107 (51.40%), Query Frame = 1 
Query:  148 LKEFMHRKRMLDLYRGILKRARELEDKDVAAQA----RRQFKLSQEETDPLKIKMAIADATMHLEALQGAVRSGAAVAGAGGGESWLDIDDPDDKRGRVGTGFPWER 456
            LKEF+HR  ++  YR  L+    + D     QA    R  F+ +  ETD + +KM +AD    L+ ++  V        +   +SWL+I D +D RGRVG  +PW R
Sbjct:   49 LKEFLHRTTVVRQYRAFLRAVAVIPDTPWRIQAQTEVRTTFRRNATETDRMALKMTVADGARRLQQVRSMVGYKNPQTESDE-DSWLNIKDEEDPRGRVGVQWPWSR 154
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BLAST of mRNA_H-elongata_contig102251.199.1 vs. uniprot
Match: A0A7S4JFV4_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JFV4_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 6.010e-5
Identity = 39/118 (33.05%), Postives = 58/118 (49.15%), Query Frame = 1 
Query:  130 MGGALGLKEFMHRKRMLDLYRGILKRARELEDKDVAAQA----RRQFKLSQEETDPLKIKMAIADATMHLEALQGAV-----RSGAAVAGAGGGESWLDIDDPDDKRGRVGTGFPWER 456
            +G    LKEF+H+  ++  YR  L+    + D+     A    RR F+     TD + I M +AD    L  ++  V     RS          +SWL+IDD +DKRGRVG  +PW++
Sbjct:   55 LGNLPSLKEFVHKTAVVRQYRDFLRAVVMIPDETFRQSALDEVRRTFRQHSFMTDKIAIDMEVADGGRRLNQVRSMVGYVDPRSN------DDSDSWLNIDDKEDKRGRVGVEWPWDQ 166
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig102251.199.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5JB99_9PHAE1.220e-3973.58Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
D8LRC8_ECTSI5.330e-3468.69Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
A0A835YQF9_9STRA1.330e-1846.30Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
A0A7S2K2A3_9STRA3.420e-1041.28Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A482SDI4_9ARCH5.150e-1035.14LYR motif-containing protein n=1 Tax=archaeon TaxI... [more]
A0A7S1Z286_9STRA3.330e-635.51Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S2XK87_9STRA2.450e-534.58Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S4JFV4_9STRA6.010e-533.05Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig102251contigH-elongata_contig102251:2..2341 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionComplex 1 LYR protein
Ec32 orthologEc-06_003010.1
Exons2
Model size1303
Cds size330
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig102251.199.1prot_H-elongata_contig102251.199.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig102251 131..1497 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929560.9728673-UTR-H-elongata_contig102251:1..1301622929560.9728673-UTR-H-elongata_contig102251:1..130Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig102251 2..130 +
1691679070.736014-UTR-H-elongata_contig102251:1..1301691679070.736014-UTR-H-elongata_contig102251:1..130Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig102251 2..130 +
1622929561.0335174-UTR-H-elongata_contig102251:1497..23411622929561.0335174-UTR-H-elongata_contig102251:1497..2341Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig102251 1498..2341 +
1691679070.7654405-UTR-H-elongata_contig102251:1497..23411691679070.7654405-UTR-H-elongata_contig102251:1497..2341Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig102251 1498..2341 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929561.001315-CDS-H-elongata_contig102251:130..2051622929561.001315-CDS-H-elongata_contig102251:130..205Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102251 131..205 +
1691679070.7486389-CDS-H-elongata_contig102251:130..2051691679070.7486389-CDS-H-elongata_contig102251:130..205Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102251 131..205 +
1622929561.0160398-CDS-H-elongata_contig102251:1242..14971622929561.0160398-CDS-H-elongata_contig102251:1242..1497Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102251 1243..1497 +
1691679070.7578583-CDS-H-elongata_contig102251:1242..14971691679070.7578583-CDS-H-elongata_contig102251:1242..1497Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102251 1243..1497 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig102251.199.1

>prot_H-elongata_contig102251.199.1 ID=prot_H-elongata_contig102251.199.1|Name=mRNA_H-elongata_contig102251.199.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=110bp
MGGALGLKEFMHRKRMLDLYRGILKRARELEDKDVAAQARRQFKLSQEET
DPLKIKMAIADATMHLEALQGAVRSGAAVAGAGGGESWLDIDDPDDKRGR
VGTGFPWER*
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mRNA from alignment at H-elongata_contig102251:2..2341+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig102251.199.1 ID=mRNA_H-elongata_contig102251.199.1|Name=mRNA_H-elongata_contig102251.199.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2340bp|location=Sequence derived from alignment at H-elongata_contig102251:2..2341+ (Himanthalia elongata Himel1 dioecious)
ATCAGAACATCATCCTCGCAGCCGGGGGGTTCTGCGACCAGTACACCACT
ACAGAGCGCGGGTCCTCGAAGGCGCCGTGCCCGCGATGGGAAGAATGATG
ACGATGGGAAGAATGATGACGATGGGAAGATGGGAGGCGCCCTGGGGCTG
AAGGAGTTCATGCACCGCAAGCGAATGCTCGATCTATACCGCGGAATTCT
AAAGGTGGGACGACATGATAAATATTGAACCCAGCCCCAAGTTTCTCGTA
ATCGCAAGCGCCTCGCGGTCGTAAGAAGGAGCTCCAGTCGAGAACGGACT
TGCACTCGTGCAGCAGAGCGGGAGACTCTAGCGCTGCTTTAAGTGTATTT
CACAAAAATCGTGATCGTGTGCGTCTAGCTCTCCTGGATTTCATTCCCTG
GCATTTTCTGTCACGTTTGTGGAGTACCTTTTGTGTATTCGATGAGGTAA
ATAGTGCCGTGCATTATATTATACATACAGCACCCAGGGGACGATCCCCC
CCCTTCCCCTGCTTTCTCTCGCCAACTAGAACGATCAGGAGTTGCACGAA
ACACTGCGGTTTTCAAGATCCCGTCGAGGTGTTTTCGTGAGCTTTCCTAG
AAATATATATATCCCCATCGTTGCGACAAAAAATTGACGGAGGACATCGT
TCCTGTAGCCCCCGGGGGTGCGTTATACCCTCTCATTTCCGGTGCAGTAC
CAGTCGAGGACTATTCGAGATCCCCCCACATTGGCTTTAAAGCGCTTCTG
AGCGATCATGTTGCTTGCCCGTCGGAGATAAATACACTTGATTAACGTCG
TGCTTTCGAGAGACCAGTGCGATATCTCCGCTCGCTATATCCCACCGGCA
GGGGGTTTTCTATTCTGCTGGTGGTGATCGACGAAGCGTCGCGAGCCCAT
CGAGATCGACCCGTCCCTCGGAGGTTGTAGGCGGCTGCCGCGCCTTGTTC
AAGCACGAGTGCTCCCCACCCTTGTTCCCGTTGGTCATGGAGTGGCACGA
AGCCTCCCCTTACCCCTCCGGGATAACTCTGTCTCGAACAGCACCTCGCT
TTTTCTCTCAAACGTCGAAAGCAACAAAAGAACCGCCACTTCAGTCCTCC
ATCTTACCTACTTCGCCTTGCACAATGCTGCTGCTGCACAATGTTGCTGC
AGACAACTCAACGATAAACGGTGTATTTTATCGCTTACCCCCCCCCCCCG
CTCCCCCTCCCCTTGTTCCCACCTACGGCCTCCCTAAGCAGCGGGCCCGC
GAGCTGGAGGACAAAGACGTAGCGGCTCAGGCGAGAAGACAGTTTAAGCT
CTCTCAGGAAGAGACGGACCCGCTGAAGATCAAGATGGCGATCGCTGATG
CCACGATGCATCTGGAGGCCTTGCAGGGAGCCGTGAGGTCGGGCGCCGCC
GTCGCGGGCGCGGGGGGTGGGGAGTCATGGCTAGATATTGATGATCCGGA
TGACAAGCGGGGGCGGGTCGGAACCGGGTTTCCGTGGGAACGGTAGCTCA
GGCGGCGGCGAGAGGACGTGTCCTTTTTTAGATCAAGCTACCCCCATGGT
TCGTGGAATTGTTTATGCTTTCTGAATTATCTAACCGCTACGGTAGTTTG
ACCTTGAACGTTTTTCTTGAACGTTTTTCTCCTTTCCGGATGGCGTATTT
TTTCTACCTTCTGACCACCGGCTGGATTTTGACATCAGCTTATGTGAGAA
TTCAAAATCAATTCAATTCAAAATTCAATTCAAATTCAATACCCCACCGA
GTCCTGGGTTTGGCGCATGCACTTAAGCCGCGGTAGCTCAAGTGGTAACC
TACACGATATGATTGTATCATGTCTACTGGGATTTACCAGCATCCCTCAT
GTGCCTATACCCAACAATACATTATCTTTACACACTACAATACATTATCT
TTACAGCCTACTCTCTAGGCTATACTATAGCTCTGGTTTGGCGTTTCGAT
ATGATGAATAATGTAAGTGTACGCCGACGTTATACTGTTTTGAGCCGATG
CGTTTACCATGGGGGAACACGATTGATCACATGTCGTGTGACGATTAAGT
GCTAAAGGTAGTAATACTAGTGTACAGACTCAAATCTGCCGATAGTTGTT
CCCCCAGGCTTCGCTTCACCTCTTACCTCTTATGGTGCAAATAAGGTACG
GATGTTCGGAGGGGTTGAATGAGTTTATATGTTCAAAAAATAGTATTGTA
TCAGTTGGACAACACTCCTGTGGGTTGGAATATCGGGAAAAGAAAAGCAC
TGCTATACTGTAGTAGCGGGAATCTTGAGAACATGAGTTTGTAACCAATG
TTTGATGAGGGGCAGGAGTGGATTGGCCTTGCATCGCGGT
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Coding sequence (CDS) from alignment at H-elongata_contig102251:2..2341+

>mRNA_H-elongata_contig102251.199.1 ID=mRNA_H-elongata_contig102251.199.1|Name=mRNA_H-elongata_contig102251.199.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=660bp|location=Sequence derived from alignment at H-elongata_contig102251:2..2341+ (Himanthalia elongata Himel1 dioecious)
ATGGGAGGCGCCCTGGGGCTGAAGGAGTTCATGCACCGCAAGCGAATGCT
CGATCTATACCGCGGAATTCTAAAGATGGGAGGCGCCCTGGGGCTGAAGG
AGTTCATGCACCGCAAGCGAATGCTCGATCTATACCGCGGAATTCTAAAG
CGGGCCCGCGAGCTGGAGGACAAAGACGTAGCGGCTCAGGCGAGAAGACA
GTTTAAGCTCTCTCAGGAAGAGACGGACCCGCTGAAGATCAAGATGGCGA
TCGCTGATGCCACGATGCATCTGGAGGCCTTGCAGGGAGCCGTGAGGTCG
GGCGCCGCCGTCGCGGGCGCGGGGGGTGGGGAGTCATGGCTAGATATTGA
TGATCCGGATGACAAGCGGGGGCGGGTCGGAACCGGGTTTCCGTGGGAAC
GGTAGCGGGCCCGCGAGCTGGAGGACAAAGACGTAGCGGCTCAGGCGAGA
AGACAGTTTAAGCTCTCTCAGGAAGAGACGGACCCGCTGAAGATCAAGAT
GGCGATCGCTGATGCCACGATGCATCTGGAGGCCTTGCAGGGAGCCGTGA
GGTCGGGCGCCGCCGTCGCGGGCGCGGGGGGTGGGGAGTCATGGCTAGAT
ATTGATGATCCGGATGACAAGCGGGGGCGGGTCGGAACCGGGTTTCCGTG
GGAACGGTAG
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