mRNA_H-elongata_contig126631.1980.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig126631.1980.1
Unique NamemRNA_H-elongata_contig126631.1980.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig126631.1980.1 vs. uniprot
Match: A0A6H5JYW2_9PHAE (SH2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JYW2_9PHAE)

HSP 1 Score: 171 bits (434), Expect = 3.120e-47
Identity = 94/117 (80.34%), Postives = 102/117 (87.18%), Query Frame = 1 
Query:    1 QYLPPGTCKLLVGHKADLPAYVVNDEALSLYVALASGFRGWCLTVGSSEYGDYDVAARRGG---ATAEGGGRYKGQSLSGEKQLSVSEAMRTLLGHIFRTGGVG-GASGARPATVVG 339
            ++ PP TCKLLVGHKADLPAYVVNDEALSLYVA ASGF+GWCLTVGSSEYGDYDVAARRGG   ATA  G R+KGQSLSGEKQLSVSEA+RTLLGH+FR+GG   GAS  RPA V+G
Sbjct:  114 KFYPPWTCKLLVGHKADLPAYVVNDEALSLYVAGASGFKGWCLTVGSSEYGDYDVAARRGGGSGATAH-GARHKGQSLSGEKQLSVSEAVRTLLGHVFRSGGAARGAS--RPAGVLG 227
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig126631.1980.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JYW2_9PHAE3.120e-4780.34SH2 domain-containing protein n=2 Tax=Ectocarpus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig126631contigH-elongata_contig126631:120..1518 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score174.1
Seed ortholog evalue3.8e-41
Seed eggNOG ortholog2880.D7FGU6
KEGG koko:K07874
KEGG Pathwayko05134,map05134
EggNOG free text desc.GTPase activity
EggNOG OGsKOG0084@1,KOG0084@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04031,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Exons2
Model size348
Cds size348
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929750.2812297-CDS-H-elongata_contig126631:119..2921622929750.2812297-CDS-H-elongata_contig126631:119..292Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig126631 120..292 +
1691679143.003896-CDS-H-elongata_contig126631:119..2921691679143.003896-CDS-H-elongata_contig126631:119..292Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig126631 120..292 +
1622929750.2919154-CDS-H-elongata_contig126631:1343..15181622929750.2919154-CDS-H-elongata_contig126631:1343..1518Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig126631 1344..1518 +
1691679143.0154977-CDS-H-elongata_contig126631:1343..15181691679143.0154977-CDS-H-elongata_contig126631:1343..1518Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig126631 1344..1518 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig126631.1980.1prot_H-elongata_contig126631.1980.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig126631 120..1518 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig126631.1980.1

>prot_H-elongata_contig126631.1980.1 ID=prot_H-elongata_contig126631.1980.1|Name=mRNA_H-elongata_contig126631.1980.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=116bp
QYLPPGTCKLLVGHKADLPAYVVNDEALSLYVALASGFRGWCLTVGSSEY
GDYDVAARRGGATAEGGGRYKGQSLSGEKQLSVSEAMRTLLGHIFRTGGV
GGASGARPATVVGQA*
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mRNA from alignment at H-elongata_contig126631:120..1518+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig126631.1980.1 ID=mRNA_H-elongata_contig126631.1980.1|Name=mRNA_H-elongata_contig126631.1980.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1399bp|location=Sequence derived from alignment at H-elongata_contig126631:120..1518+ (Himanthalia elongata Himel1 dioecious)
CAGTACCTGCCACCTGGAACGTGCAAGTTGCTGGTTGGCCACAAGGCGGA
CCTCCCCGCCTACGTCGTGAACGACGAGGCCCTGTCGCTGTACGTGGCAC
TCGCCAGCGGCTTCCGCGGGTGGTGCCTTACCGTCGGTAGCTCGGAGTAC
GGAGACTACGACGTTGCCGCGAGGTGCGCAGTCATTTTTTTTACAACTAC
AGACAGTCCCCCCCCCCCCCCCCCCCCGGGGGGGGAAAAAAATTTTTTTC
TCCTTTTTTTTTTTAAATCTTAAATGGGATAANNNNNNNNNNGCTATCAC
GCACTGCCCCACGAGGCCGCCCCGATATTTTTTCACATAACCCCCCCCCG
CCCCCCCCCCCCCTTCCTGGAGGGAGTAAAAATATTCTTGCGTCCTTTGG
TTTGTCAATACTGACAGGGTATAACAGGCTCATAAGAGTATGCAGACGAA
CTGTGTGTACAATAAAACAATTTATTTTATCTTATCTTATTTCATATGAA
GCATAAACTTATCTCGTCGATATCTCTATCTACATAAAAATGCCACTCTT
GATATACTTGCCGTTTGTTAGGGTTTGGGTTAGGGTTATAGGGTTAGGGT
GGTTGTTGCGTTCCCTGCGGAAAAATAAAAGTGGAGAAGGGAAGTCTGTC
CCTGTCCCCCCCCGGGGAGGAGCTTTTGTTTTCATTGAACACGGAGTAGA
AACGGGAAATTTACAGGAAATTTATTTCCCGGGTGGGTATTTTCAGACGG
CTTCGTTTTGTGTGTGTGTCTGTGTGTGTGATTTTCTGGTCCGATTATCT
CGGTTGCAATTCACCCACGGTGATAATACCCTGTAGTTCGTCGTTACTCC
GAAACCGGCGACGCTGCCGAGGCCTTCATAAAGTCGTTCCACCTAGAAAC
AAGCTTTTCTTCACTATCGTGGTTCATTCACTCGGCTGCTGTGCCGTCAG
ATGGTCTCCAGCGCGCCCCGCTTCCTTTAGTTTCCTTCGAAAACGCGACT
GATTCGAACTCCCGAACCCTCGACCCAATCCTGACCCCAGCCTGATCCTC
ATTGTGACTGCTTGGAATTCGTCCTCCTCTTATCCCGGACCCTAACCTAA
CCCTCACTCTAACCTAACCCTGACTCTAGCCCTGGCCGTGATCCCAATCT
AACTCCAATGTTGATTGTGTGGAACTCCCTAAGCCTAATCCTAACCGTAA
TTCAAACCCAAACCCTGTCTCCAGGCGAGGGGGTGCGACCGCAGAAGGCG
GGGGTCGCTACAAGGGACAGAGCCTCAGCGGAGAAAAGCAACTCTCGGTG
TCGGAGGCCATGCGGACGCTCCTCGGTCACATCTTCCGGACAGGCGGCGT
GGGGGGCGCCAGCGGAGCACGCCCGGCGACCGTTGTCGGACAAGCGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig126631:120..1518+

>mRNA_H-elongata_contig126631.1980.1 ID=mRNA_H-elongata_contig126631.1980.1|Name=mRNA_H-elongata_contig126631.1980.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=696bp|location=Sequence derived from alignment at H-elongata_contig126631:120..1518+ (Himanthalia elongata Himel1 dioecious)
CAGTACCTGCCACCTGGAACGTGCAAGTTGCTGGTTGGCCACAAGGCGGA
CCTCCCCGCCTACGTCGTGAACGACGAGGCCCTGTCGCTGTACGTGGCAC
TCGCCAGCGGCTTCCGCGGGTGGTGCCTTACCGTCGGTAGCTCGGAGTAC
GGAGACTACGACGTTGCCGCGAGCAGTACCTGCCACCTGGAACGTGCAAG
TTGCTGGTTGGCCACAAGGCGGACCTCCCCGCCTACGTCGTGAACGACGA
GGCCCTGTCGCTGTACGTGGCACTCGCCAGCGGCTTCCGCGGGTGGTGCC
TTACCGTCGGTAGCTCGGAGTACGGAGACTACGACGTTGCCGCGAGGCGA
GGGGGTGCGACCGCAGAAGGCGGGGGTCGCTACAAGGGACAGAGCCTCAG
CGGAGAAAAGCAACTCTCGGTGTCGGAGGCCATGCGGACGCTCCTCGGTC
ACATCTTCCGGACAGGCGGCGTGGGGGGCGCCAGCGGAGCACGCCCGGCG
ACCGTTGTCGGACAAGCGTAAGCGAGGGGGTGCGACCGCAGAAGGCGGGG
GTCGCTACAAGGGACAGAGCCTCAGCGGAGAAAAGCAACTCTCGGTGTCG
GAGGCCATGCGGACGCTCCTCGGTCACATCTTCCGGACAGGCGGCGTGGG
GGGCGCCAGCGGAGCACGCCCGGCGACCGTTGTCGGACAAGCGTAA
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