mRNA_H-elongata_contig126589.1977.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig126589.1977.1
Unique NamemRNA_H-elongata_contig126589.1977.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig126589.1977.1 vs. uniprot
Match: D7FRC4_ECTSI (PNPLA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRC4_ECTSI)

HSP 1 Score: 237 bits (604), Expect = 3.860e-72
Identity = 134/296 (45.27%), Postives = 158/296 (53.38%), Query Frame = 1
Query:   10 GLETVTISPFYASRATIRPSRYVPLSWIVLAPNDPCAIDWLYDLGYRDALFWMAKEGIVHTCSH----------------DASK-------------------------------------------------------------SFVLSGCKMRPHRERHPKLDEPLFVPSLEQFVGLGKYHATVDFVFVIFFNLLWRPTAALLLYIALFARLNLAVARGVGKELHPLLWWQVPSLLLVGIALERRPSPRDLVLVLIAVAAIVVVRARKEDAPSKADWREASNCVRGLLEYRILL 666
            G +TVTISP YAS A+IRPSRYVPLSWI L PNDP AIDWLYDLGYRDALFWMA EGI HTCSH                D++                                                              SF LSGC+MRP RERH +LD P FVPSLE+FVG G YHA  D +F +FFN++WRP AALLL   L   L LA +R   K+L PLLWW +P+LLL   ALE  P+  + +   +AVAA     A +E AP K  WREA    R L+++R +L
Sbjct:  176 GRKTVTISPLYASTASIRPSRYVPLSWIALPPNDPGAIDWLYDLGYRDALFWMANEGIEHTCSHVSRLSKFSSSSNGCAPDSTMAKDSVLEGGASALRXXXXXXXXXXXRRGNEGGVGLKSTTAREDGEGRRNGGGQEGQFYVRPSFTLSGCRMRPRRERHAELDAPRFVPSLEKFVGHGSYHALADSLFCVFFNVVWRPAAALLLCAELVTSLLLASSRAFAKDLRPLLWWLLPTLLLGEAALEHWPTAMEGIAAAVAVAAXXXXAASREGAPGKESWREARRSARALVDFRCVL 471          
BLAST of mRNA_H-elongata_contig126589.1977.1 vs. uniprot
Match: A0A6H5KQY3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQY3_9PHAE)

HSP 1 Score: 206 bits (524), Expect = 7.350e-60
Identity = 135/384 (35.16%), Postives = 158/384 (41.15%), Query Frame = 1
Query:    7 QGLETVTISPFYASRATIRPSRYVPLSWIVLAPNDPCAIDWLYDLGYRDALFWMAKEGIVHTCSH----------------DASK----------------------------------------------------------------------------------------------------------------------------------------------------SFVLSGCKMRPHRERHPKLDEPLFVPSLEQFVGLGKYHATVDFVFVIFFNLLWRPTAALLLYIALFARLNLAVARGVGKELHPLLWWQVPSLLLVGIALERRPSPRDLVLVLIAVAAIVVVRARKEDAPSKADWREASNCVRGLLEYRILL 666
            +GL+TVTISP YAS A+IRPSRYVPLSWI L PNDP AIDWLYDLGYRDALFWMA EGI HTCSH                D++                                                                                                                                                     SF LSGC+MRP RERH +LD P FVPSLE+FVG G YHA  D +F +FFN++WRP AALLL   L   L LA +R   K+L PLLWW +P+LLL G ALE RP     +   +AV       A +E AP K  WREA    R L+++R +L
Sbjct:  133 RGLKTVTISPLYASTASIRPSRYVPLSWIALPPNDPGAIDWLYDLGYRDALFWMANEGIDHTCSHVSRLSRFSSSSTGCAPDSTMAKDSVLEGGASALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAARRGNEGVGLKSTTAREDGQGRRNGVGQERQFYVRPSFTLSGCRMRPRRERHAELDAPRFVPSLEKFVGHGSYHALADSLFCVFFNVVWRPAAALLLCAELVTSLLLASSRAFAKDLRPLLWWLLPTLLLGGAALEHRPIATQGIAAAVAVXXXXXXXASREGAPGKESWREARQSARALVDFRCVL 516          
BLAST of mRNA_H-elongata_contig126589.1977.1 vs. uniprot
Match: A0A7S3URP2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3URP2_HETAK)

HSP 1 Score: 114 bits (284), Expect = 3.940e-26
Identity = 70/187 (37.43%), Postives = 94/187 (50.27%), Query Frame = 1
Query:   19 TVTISPFYASRATIRPSRYVPLSWIVLAPNDPCAIDWLYDLGYRDALFWMAKEGIVHTCSHDASKSFVLSGCKMRPHRERHPKLDEPLFVPSLEQFVGLGKYHATV----DFVFVIFFNLLWRPTAALLLYIALFARLNLAVARGVGKELHPLLWWQVPSLLLVGIALERRPSPRDLVLVLIAVAAI 567
            T+T++P +  +A I+PSRYVP  W  L P DP  IDWL+DLGY+D L WMAK G  HTC+H      V   C  RP R  HP   +     S ++  G G   + +    D ++V +  +LW+P A             LA A+GV KE  P+L      L L G  L R P+     L+L A  A+
Sbjct:  207 TITVNPLWFWKADIKPSRYVPAIWAALPPKDPSTIDWLFDLGYKDCLSWMAKNGYAHTCTHCEDGDIVT--CSKRPERAPHPY--DQNSKSSFQRVFGYGSQSSPLMRLLDSLWVFWLTVLWKPIALXXXXXXXXXXXXLAAAKGVWKEALPIL-----PLALFGACLVR-PATGQYALLLGAALAL 383          
BLAST of mRNA_H-elongata_contig126589.1977.1 vs. uniprot
Match: A0A835ZCR0_9STRA (Acyl transferase/acyl hydrolase/lysophospholipase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCR0_9STRA)

HSP 1 Score: 103 bits (257), Expect = 1.510e-22
Identity = 60/151 (39.74%), Postives = 73/151 (48.34%), Query Frame = 1
Query:   16 ETVTISPFYASRATIRPSRYVPLSWIVLAPNDPCAIDWLYDLGYRDALFWMAKEGIVHTCSHDASKSFVLSGCKMRPHRERHPKLDEPLFV----PSLEQFVGLGKYHATVDFVFVIFFNLLWRPTAALLLYIALFARLNLAVARGVGKEL 456
            ETV ++PFY S A IRPSRYVP+ W  L P DP +IDWLYDLGY DAL WM +  + H C H  S                              P+L +  G G  +  +D V V +  +LWRP   LL+     A L L VA  VG  L
Sbjct:  187 ETVYVNPFYFSHADIRPSRYVPVWWAFLPPRDPNSIDWLYDLGYSDALDWMRRRRLAHCCKHRPSXXXXXXXXXXXXXXXXXXXXXXXXXXAGDRPTLARIFGYGGSNTLLDAVLVFWMAVLWRPATFLLVT----AELVLLVAAAVGSAL 333          
BLAST of mRNA_H-elongata_contig126589.1977.1 vs. uniprot
Match: A0A835Z0V0_9STRA (PNPLA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0V0_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 4.480e-14
Identity = 35/62 (56.45%), Postives = 41/62 (66.13%), Query Frame = 1
Query:   16 ETVTISPFYASRATIRPSRYVPLSWIVLAPNDPCAIDWLYDLGYRDALFWMAKEGIVHTCSH 201
            ET+ +SPFY   A I+PSRYVP+ W  L P     IDWLYDLGYRDAL WM + G+   C H
Sbjct:  725 ETIFVSPFYLVDADIKPSRYVPVWWAFLPPPHSGTIDWLYDLGYRDALLWMQRRGLDFCCDH 786          
BLAST of mRNA_H-elongata_contig126589.1977.1 vs. uniprot
Match: A0A662WN74_9STRA (PNPLA domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WN74_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 8.320e-14
Identity = 59/230 (25.65%), Postives = 111/230 (48.26%), Query Frame = 1
Query:   16 ETVTISPFYASRATIRPSRYVPLSWIVLAPNDPCAIDWLYDLGYRDALFWMAKEGIVHTCSHDASKSFVLSGCKMRPHRERHPKLDEPLFVPSLEQFVGLGKYHATV-DFVFVIFFNLLWRPTAALLLYIALFARLNLAVARGVGKELHPLLWWQVPSLLLVGIALERRP-SPRDLVLVLIAVAA-------IVVVRARKEDAPSKA--DWREASNCVRGLLEYRILLSC 672
            +TVT+SPFY + A I+P  YVP+ W +  P +   ++WL+DLGY DAL W+ K+G+         +  V+   K   +           ++ ++ + VG   + + V D +F+  F  +WRP A + LY+ L+  L   V+ G            + ++++  +AL       +  +L+L+++ A       +V++     +A   A  DW++  +C+R +    + L C
Sbjct:  216 KTVTVSPFYCTGADIKPLVYVPMWWALFPPGER-DVEWLFDLGYEDALKWIVKKGLT------GGRENVVIPTKSTDYAGD--------WITTVGRVVGYRGFESRVLDALFIGLFVCIWRPLAFVCLYLELY--LQAIVSGGKAAVFGAAAKLLISNIIMAALALALATLGLQHTMLLLLSLGAAGFFLGGLVLLSGGLHEAARVASQDWQKCQSCMRSITSLSLFLRC 428          
BLAST of mRNA_H-elongata_contig126589.1977.1 vs. uniprot
Match: A0A1V9YNE4_9STRA (Patatin-like phospholipase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YNE4_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 8.470e-13
Identity = 66/225 (29.33%), Postives = 101/225 (44.89%), Query Frame = 1
Query:   19 TVTISPFYASRATIRPSRYVPLSWIVLAPNDPCAIDWLYDLGYRDALFWMAKEGIVHTCSHDASKSFVLSGCKMRPHRERHPKLDEPLFVPSLEQFVGLGKY-HATVDFVFVIFFNLLWRPTAALLLYIALFARLNLAVARGVGKELHPLLWWQVPSLLLV--GIALERRPSP------RDLVLVLIAVAAIVVVRARKEDAPSKADWREASNCVRGLLEYRILL 666
            T+T+SPFY + A I+PS+YVP+ W V  P  P +I WLY+LG RDA+ W   +G+        +   V+   +   H  R           SL +F+G     +  +D +FV     LW+P A  LLY  L+ R  ++ A      +     W + +++ V  G A     +P        LV+  +  A     R   E A SK  WR+   CV+ +    + L
Sbjct:  173 TITVSPFYCTTADIKPSQYVPMWWAVYPPA-PESIQWLYELGQRDAIAWAKAKGL--------TTRTVVPPVRWGAHSYR----------TSLGRFLGYRFLENKLLDALFVTAVVALWKPLAFGLLYTELWVRAVVSAAHAAAYAVATAGQWTLSAVIAVAAGFAALSVVAPVGLNPLLGLVVCFLLCAFSSTGRLELEAAVSK--WRQCITCVQIVFSMSLFL 376          
BLAST of mRNA_H-elongata_contig126589.1977.1 vs. uniprot
Match: A0A3F2S4C1_9STRA (PNPLA domain-containing protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S4C1_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 5.270e-10
Identity = 62/226 (27.43%), Postives = 107/226 (47.35%), Query Frame = 1
Query:   16 ETVTISPFYASRATIRPSRYVPLSWIVLAPNDPCAIDWLYDLGYRDALFWMAKEGIVHTCSHDASKSFVLSGCKMRPHRERHPKLDEPLFVPSLEQFVGL-GKYHATVDFVFVIFFNLLWRPTAALLLYIALFARLNLAVARGV--GKELHPLLWWQVPSLLLVGIALERRPSPRDLVLVL----IAVAAIVVVRARKEDAPSKA--DWREASNCVRGLLEYRILL 666
            +TVT+SPFY + A I+PS YVP+ W +  P     + WL+DLGY+D L W+A   +         +  V+      P+   +    +  +  ++ + VG  G     +D +FV  F  LWRP + + LYI L+ +  ++ ++ V  G     L+   V + L V +A          +L L    + + AIV++     +A   A  DW++  +C+R +    + L
Sbjct:  169 KTVTVSPFYCTGADIKPSAYVPMWWALFPPGVK-DVAWLFDLGYKDGLKWIADNDL------SGGRDVVI------PNNSANY---DGGWSTTVGRVVGYRGCESRILDALFVGLFVCLWRPLSFVCLYIELYLQAIVSGSKAVVFGAAAKLLISNIVMATLAVALATLGLQHTMLFLLGLTTAGLLLGAIVLLVGGLHEAARVASQDWQKCRSCMRSITSLSLFL 378          
BLAST of mRNA_H-elongata_contig126589.1977.1 vs. uniprot
Match: A0A6T5VQ96_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A6T5VQ96_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 7.450e-10
Identity = 44/138 (31.88%), Postives = 69/138 (50.00%), Query Frame = 1
Query:   19 TVTISPFYASRATIRPSRYVPLSWIVLAPNDPCAIDWLYDLGYRDALFWMAKEGIVHTCSHDASKSFVLSGCKMRPHRERHPKLDEPLFVPSLEQFVGLG----KYHA---TVDFVFVIFFNLLWRPTAALLLYIALF 411
            T+T+SPFY S   I+PSRYVPL W    P     +DWLY LG+ DA+ +  K  I +  ++       ++       +E HP         S+ +F+G       +H    T+D V ++ F  +++P A L +YI L+
Sbjct:  193 TITVSPFYFSDCDIKPSRYVPLWWAFFPPKSSGTVDWLYKLGWDDAMSFFDKCKIPNDSTNIRLHLNSIN-------KESHPYDTRGRI--SMHRFLGYNFNNIAHHYVSFTIDLVLLLLFLFVFKPLALLSIYIELY 321          
BLAST of mRNA_H-elongata_contig126589.1977.1 vs. uniprot
Match: A0A3R7JAD9_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7JAD9_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 4.270e-9
Identity = 61/226 (26.99%), Postives = 105/226 (46.46%), Query Frame = 1
Query:   16 ETVTISPFYASRATIRPSRYVPLSWIVLAPNDPCAIDWLYDLGYRDALFWMAKEGIVHTCSHDASKSFVLSGCKMRPHRERHPKLDEPLFVPSLEQFVGL-GKYHATVDFVFVIFFNLLWRPTAALLLYIALFARLNLAVARGV--GKELHPLLWWQVPSLLLVGIALERRPSPRDLVLVL----IAVAAIVVVRARKEDAPSKA--DWREASNCVRGLLEYRILL 666
            +TVT+SPFY + A I+PS YVP+ W +  P     + WL+DLGY+D L W+A   +         +  V+      P+   +    +  +  ++ + VG  G     +D +FV  F  LWRP + + LYI L+ +  ++ ++ V  G     L+   V + L V +A           L L    + +  IV++     +A   A  DW++  +C+R +    + L
Sbjct:  185 KTVTVSPFYCTGADIKPSAYVPMWWALFPPGVK-DVAWLFDLGYKDGLKWIADNDL------SGGRDVVI------PNNSANY---DGGWSTTVGRVVGYRGCESRILDALFVGLFVCLWRPLSFVCLYIELYLQAIVSGSKAVVFGAAAKLLISNIVMATLAVALATLGLQHTMLFFLGLTTAGLLLGGIVLLVGGLHEAARVASQDWQKCRSCMRSITSLSLFL 394          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig126589.1977.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D7FRC4_ECTSI3.860e-7245.27PNPLA domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KQY3_9PHAE7.350e-6035.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3URP2_HETAK3.940e-2637.43Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A835ZCR0_9STRA1.510e-2239.74Acyl transferase/acyl hydrolase/lysophospholipase ... [more]
A0A835Z0V0_9STRA4.480e-1456.45PNPLA domain-containing protein n=1 Tax=Tribonema ... [more]
A0A662WN74_9STRA8.320e-1425.65PNPLA domain-containing protein n=2 Tax=Nothophyto... [more]
A0A1V9YNE4_9STRA8.470e-1329.33Patatin-like phospholipase n=1 Tax=Achlya hypogyna... [more]
A0A3F2S4C1_9STRA5.270e-1027.43PNPLA domain-containing protein n=1 Tax=Phytophtho... [more]
A0A6T5VQ96_9STRA7.450e-1031.88Hypothetical protein (Fragment) n=1 Tax=Chromulina... [more]
A0A3R7JAD9_9STRA4.270e-926.99Uncharacterized protein n=2 Tax=Phytophthora kerno... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig126589contigH-elongata_contig126589:473..1498 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score238.0
Seed ortholog evalue4.2e-60
Seed eggNOG ortholog2880.D7FRC4
KEGG rclassRC00020,RC00037,RC00041,RC00094
KEGG koko:K16816
KEGG ReactionR02250,R02687
KEGG Pathwayko00561,ko01100,ko04714,ko04923,map00561,map01100,map04714,map04923
KEGG ModuleM00098
EggNOG free text desc.triglyceride catabolic process
EggNOG OGsKOG3773@1,KOG3773@2759
EC3.1.1.3
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size681
Cds size681
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929750.0996368-CDS-H-elongata_contig126589:472..6811622929750.0996368-CDS-H-elongata_contig126589:472..681Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig126589 473..681 +
1691679142.9521058-CDS-H-elongata_contig126589:472..6811691679142.9521058-CDS-H-elongata_contig126589:472..681Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig126589 473..681 +
1622929750.1120312-CDS-H-elongata_contig126589:1026..14981622929750.1120312-CDS-H-elongata_contig126589:1026..1498Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig126589 1027..1498 +
1691679142.9631326-CDS-H-elongata_contig126589:1026..14981691679142.9631326-CDS-H-elongata_contig126589:1026..1498Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig126589 1027..1498 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig126589.1977.1prot_H-elongata_contig126589.1977.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig126589 473..1498 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig126589.1977.1

>prot_H-elongata_contig126589.1977.1 ID=prot_H-elongata_contig126589.1977.1|Name=mRNA_H-elongata_contig126589.1977.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=227bp
FQQGLETVTISPFYASRATIRPSRYVPLSWIVLAPNDPCAIDWLYDLGYR
DALFWMAKEGIVHTCSHDASKSFVLSGCKMRPHRERHPKLDEPLFVPSLE
QFVGLGKYHATVDFVFVIFFNLLWRPTAALLLYIALFARLNLAVARGVGK
ELHPLLWWQVPSLLLVGIALERRPSPRDLVLVLIAVAAIVVVRARKEDAP
SKADWREASNCVRGLLEYRILLSCLTL
back to top

mRNA from alignment at H-elongata_contig126589:473..1498+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig126589.1977.1 ID=mRNA_H-elongata_contig126589.1977.1|Name=mRNA_H-elongata_contig126589.1977.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1026bp|location=Sequence derived from alignment at H-elongata_contig126589:473..1498+ (Himanthalia elongata Himel1 dioecious)
TTTCAACAGGGACTGGAAACTGTAACCATCAGCCCGTTCTACGCCAGCAG GGCAACCATTCGACCGTCGCGGTACGTGCCCCTCTCGTGGATAGTTCTCG CTCCGAATGATCCTTGTGCGATTGACTGGCTGTACGATCTCGGCTACCGC GATGCGCTATTCTGGATGGCCAAGGAGGGTATCGTGCATACGTGTTCACA CGATGCAAGGTTCGCCAAGCACAGCAAAGACCTCTGCACGGCAGCAAAGG TCGATCACACCAGCACGGTGGCACTCCAAAGCGACGGCAGCGATAGCGAC AATCTGACGCTCGCGCAAGTGCCATCTTTGCGGGTGACATGTGCCTACGT TGATACGCTGGCAACTCCACTGGAGCTACCTTTCCTTTTTAGCGACAACG ACAGACAGGGTAGACAGGGCGAATATCACGAGAAAAATAATACCACCAAG GGGGAGGTGTCGGATGAGGCATTCGGTGGCGACAGCGACAGCGAGGACGA GACGCAGTCGAGAGTGAGCAAGGCCAAGGGAAGAATAGGAGAGCACTACC TCAGCAAGTCTTTTGTGCTCTCGGGTTGCAAAATGCGCCCACACCGGGAG CGACACCCGAAGCTGGACGAGCCGTTATTTGTCCCATCTCTGGAACAATT TGTTGGGCTCGGAAAGTACCATGCAACGGTAGACTTCGTATTTGTGATCT TCTTCAACCTTTTGTGGCGCCCCACTGCCGCACTCCTCCTGTACATTGCT CTCTTTGCGCGGCTCAACCTCGCTGTAGCCCGAGGAGTTGGGAAAGAACT TCATCCACTACTGTGGTGGCAAGTCCCGTCGCTTCTCCTGGTTGGGATCG CTTTGGAGCGAAGGCCCTCTCCTCGTGACTTGGTGTTGGTGTTGATTGCG GTTGCAGCAATTGTCGTGGTGCGTGCGCGCAAAGAGGACGCTCCGAGCAA GGCAGACTGGCGCGAGGCGAGTAACTGCGTACGAGGTCTGCTGGAGTATC GCATATTGCTGAGCTGCTTGACCCTG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig126589:473..1498+

>mRNA_H-elongata_contig126589.1977.1 ID=mRNA_H-elongata_contig126589.1977.1|Name=mRNA_H-elongata_contig126589.1977.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1362bp|location=Sequence derived from alignment at H-elongata_contig126589:473..1498+ (Himanthalia elongata Himel1 dioecious)
TTTCAACAGGGACTGGAAACTGTAACCATCAGCCCGTTCTACGCCAGCAG
GGCAACCATTCGACCGTCGCGGTACGTGCCCCTCTCGTGGATAGTTCTCG
CTCCGAATGATCCTTGTGCGATTGACTGGCTGTACGATCTCGGCTACCGC
GATGCGCTATTCTGGATGGCCAAGGAGGGTATCGTGCATACGTGTTCACA
CGATGCAAGTTTCAACAGGGACTGGAAACTGTAACCATCAGCCCGTTCTA
CGCCAGCAGGGCAACCATTCGACCGTCGCGGTACGTGCCCCTCTCGTGGA
TAGTTCTCGCTCCGAATGATCCTTGTGCGATTGACTGGCTGTACGATCTC
GGCTACCGCGATGCGCTATTCTGGATGGCCAAGGAGGGTATCGTGCATAC
GTGTTCACACGATGCAAGCAAGTCTTTTGTGCTCTCGGGTTGCAAAATGC
GCCCACACCGGGAGCGACACCCGAAGCTGGACGAGCCGTTATTTGTCCCA
TCTCTGGAACAATTTGTTGGGCTCGGAAAGTACCATGCAACGGTAGACTT
CGTATTTGTGATCTTCTTCAACCTTTTGTGGCGCCCCACTGCCGCACTCC
TCCTGTACATTGCTCTCTTTGCGCGGCTCAACCTCGCTGTAGCCCGAGGA
GTTGGGAAAGAACTTCATCCACTACTGTGGTGGCAAGTCCCGTCGCTTCT
CCTGGTTGGGATCGCTTTGGAGCGAAGGCCCTCTCCTCGTGACTTGGTGT
TGGTGTTGATTGCGGTTGCAGCAATTGTCGTGGTGCGTGCGCGCAAAGAG
GACGCTCCGAGCAAGGCAGACTGGCGCGAGGCGAGTAACTGCGTACGAGG
TCTGCTGGAGTATCGCATATTGCTGAGCTGCTTGACCCTGCAAGTCTTTT
GTGCTCTCGGGTTGCAAAATGCGCCCACACCGGGAGCGACACCCGAAGCT
GGACGAGCCGTTATTTGTCCCATCTCTGGAACAATTTGTTGGGCTCGGAA
AGTACCATGCAACGGTAGACTTCGTATTTGTGATCTTCTTCAACCTTTTG
TGGCGCCCCACTGCCGCACTCCTCCTGTACATTGCTCTCTTTGCGCGGCT
CAACCTCGCTGTAGCCCGAGGAGTTGGGAAAGAACTTCATCCACTACTGT
GGTGGCAAGTCCCGTCGCTTCTCCTGGTTGGGATCGCTTTGGAGCGAAGG
CCCTCTCCTCGTGACTTGGTGTTGGTGTTGATTGCGGTTGCAGCAATTGT
CGTGGTGCGTGCGCGCAAAGAGGACGCTCCGAGCAAGGCAGACTGGCGCG
AGGCGAGTAACTGCGTACGAGGTCTGCTGGAGTATCGCATATTGCTGAGC
TGCTTGACCCTG
back to top