prot_H-elongata_contig126553.1975.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig126553.1975.1
Unique Nameprot_H-elongata_contig126553.1975.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length282
Homology
BLAST of mRNA_H-elongata_contig126553.1975.1 vs. uniprot
Match: D7FJQ3_ECTSI (PHD-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJQ3_ECTSI)

HSP 1 Score: 399 bits (1025), Expect = 8.130e-133
Identity = 203/290 (70.00%), Postives = 234/290 (80.69%), Query Frame = 0
Query:    1 GDGLRKRSRNASDGENRWDRIRSKVKNLLQKMRRDTHFIQVYQQDGWKSSGREKLKPTIELEKGKARVRGVKAELRQVAKRLTEMNPGGTRWGGLQQDNDGNIKVDEVVCTKCNKGDSDDQDDILLCDYAGCFRAYHQNCLTPPVKPEAFPSEEEDWFCWQCECLTDCLEMIEEEFPGTKLESWKDVFPNIETGTASGSKQKQDVVITDSDDSDDESFRDDGDIGWMSDAESVGSDEVAKLHSEAADMA---EIEDG---TELPPEG--GGSRSSRARARRKVRIKALGL 282
            G+  RKRSRNASDGENRWDRIR+K K LL KMRRDTHF+QVYQQDGWKSSGREKLKPT ELEK + R+RG++AELR+V +RLTEMNPGG RWG +Q+D +GNI+VDE++CTKC +GDSDD DDILLCDYAGCFRAYHQNCL+PP+KPE FP EEEDWFCWQCECLTDC EM+E EF G K  SWKDVFP +ETG   G+  +QDV+ TDSD+ DDESF+ D    W+SDAESVGSDEV+KL+SEA D+A   E +DG   +    EG  GG R SRA ARR  R  ALGL
Sbjct:    4 GECSRKRSRNASDGENRWDRIRAKFKLLLHKMRRDTHFLQVYQQDGWKSSGREKLKPTAELEKARERIRGIQAELREVTRRLTEMNPGGLRWGAIQEDGEGNIEVDEIMCTKCGQGDSDDHDDILLCDYAGCFRAYHQNCLSPPIKPEVFPEEEEDWFCWQCECLTDCFEMLENEFQGEKFTSWKDVFPVVETGAEGGAAGQQDVLPTDSDEDDDESFKAD----WLSDAESVGSDEVSKLYSEAGDLACSGETDDGDVGSTAAEEGSLGGGRRSRALARRSKRYAALGL 289          
BLAST of mRNA_H-elongata_contig126553.1975.1 vs. uniprot
Match: A0A6H5KZT3_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZT3_9PHAE)

HSP 1 Score: 358 bits (920), Expect = 3.470e-115
Identity = 193/336 (57.44%), Postives = 224/336 (66.67%), Query Frame = 0
Query:    6 KRSRNASDGENRWDRIRSKVKNLLQKMRRDTHFIQVYQQDGWKSSGREKLKPTIELEKGKARVRGVKAELRQVAKRLTEMNPGGTRWGGLQQDNDGNIKVDEVVCTKCNKGDSDDQDDILLCDYAGCFRAYHQNCLTPPVKPEAFPSEEEDWFCWQCECLTDCLEMIEEEFPGTKLESWKDVFPNIETGTASGSKQKQDVVITDSDDSDDESFR---------------------------------------------------DDGDIGWMSDAESVGSDEVAKLHSEAADMA---EIEDGT--ELPPEGG---GSRSSRARARRKVRIKALGL 282
            KRSRNASDGENRWDRIR+K K LL KMRRDTHF+QVYQQDGWKSSGREKLKPT ELEK + ++RG++AELR+V +RLTEMNPGG RWG +Q+D +GNI+VDE++CTKC +GDSDD DDILLCDYAGCFRAYHQNCL+PP+KPE FP EEEDWFCWQCECLTDC EM+E EF G K  SWKDVFP +ETG   G+  +QDV+ TDS                                                            ++ +  W+SDAESVGSDEV+KL+SEA D+A   E +DG       EGG   G R SRA ARR  R  ALGL
Sbjct:  144 KRSRNASDGENRWDRIRAKFKLLLHKMRRDTHFLQVYQQDGWKSSGREKLKPTAELEKAREKIRGIQAELREVTRRLTEMNPGGLRWGAIQEDGEGNIEVDEIMCTKCGQGDSDDHDDILLCDYAGCFRAYHQNCLSPPIKPEVFPEEEEDWFCWQCECLTDCFEMLENEFQGEKFTSWKDVFPVVETGAEGGAAGQQDVLPTDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNNSEADWLSDAESVGSDEVSKLYSEAGDLACSAETDDGDVGSTAAEGGSLGGGRRSRALARRSKRYAALGL 479          
BLAST of mRNA_H-elongata_contig126553.1975.1 vs. uniprot
Match: A0A7S2SRQ9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SRQ9_9STRA)

HSP 1 Score: 142 bits (357), Expect = 2.330e-36
Identity = 72/173 (41.62%), Postives = 105/173 (60.69%), Query Frame = 0
Query:   18 WDRIRSKVKNLLQKMRRDTHFIQVYQQDGWKSSGREKLKPTIELEKGKARVRGVKAELRQVAKRLTEMNPGGTRWGGLQQDNDGNIKVDEVVCTKCNKGDSDDQDDILLCDYAGCFRAYHQNCLTPPVKPEAFPSEEE-DWFCWQCECLTDCLEMIE-EEFPGTKLESWKDVF 188
            W     +V +LL K+RR  H++Q Y+ +GW+S+ + K+KPT EL+K +  V   K E+R +  +++E NPG  +W  +Q D +  I V+EV C+ C   +S + +DIL+CD  GCFRAYHQ CL P V  E     +E DWFC QC+ L  CL ++  E+  G    SW +VF
Sbjct:  105 WLDYIKRVSSLLGKIRRLMHYLQTYEAEGWRSASQAKIKPTSELQKARDDVYAAKHEIRSILTQISEANPGNKKWSCMQGDAEEGIDVEEVGCSICLSLESTEDNDILMCDGEGCFRAYHQRCLQPAVTSEDVAGGDEVDWFCPQCDSLRHCLYLVSVEDVGGKPPTSWAEVF 277          
BLAST of mRNA_H-elongata_contig126553.1975.1 vs. uniprot
Match: L1JX63_GUITC (PHD-type domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JX63_GUITC)

HSP 1 Score: 122 bits (307), Expect = 5.950e-29
Identity = 67/177 (37.85%), Postives = 101/177 (57.06%), Query Frame = 0
Query:   20 RIRSKVKNLLQKMRRDTHFIQVYQQDGWKSSGREKLKPTIELEKGKARVRGVKAELRQVAKRL----TEMNPGGTRWGGLQQDNDGNIKVDEVVCTKCNKGDSDDQDDILLCDYAGCFRAYHQNCLTPPVKPEAFPSEEEDWFCWQCECLTDCLEMIEEEFPGTKLESWKDVFPNIE 192
            RIR+++K  L   R     +  Y+QDGW  S   KLKPT EL+K    +   K E++++ K++     E+    TR    + + +G +  +++VC+ C  GD+   +DILLCDY+ C RA+HQ C  P V     P ++EDWFC  C C TDC+E + E F GT   +W+ +FP +E
Sbjct:  134 RIRNRIKTRLTNARYFQTMLDAYEQDGWGPSSHRKLKPTEELKKSSESLIHAKKEIKELLKQMDPASNELAQKETRIDEREYEAEG-LAFEKIVCSICGTGDARRGNDILLCDYSECNRAFHQKCHHPQVTE--LPHDDEDWFCTHCLCYTDCIEAVNELF-GTHYTTWEKMFPELE 306          
BLAST of mRNA_H-elongata_contig126553.1975.1 vs. uniprot
Match: A0A7S4NP67_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4NP67_GUITH)

HSP 1 Score: 122 bits (307), Expect = 3.030e-28
Identity = 67/177 (37.85%), Postives = 101/177 (57.06%), Query Frame = 0
Query:   20 RIRSKVKNLLQKMRRDTHFIQVYQQDGWKSSGREKLKPTIELEKGKARVRGVKAELRQVAKRL----TEMNPGGTRWGGLQQDNDGNIKVDEVVCTKCNKGDSDDQDDILLCDYAGCFRAYHQNCLTPPVKPEAFPSEEEDWFCWQCECLTDCLEMIEEEFPGTKLESWKDVFPNIE 192
            RIR+++K  L   R     +  Y+QDGW  S   KLKPT EL+K    +   K E++++ K++     E+    TR    + + +G +  +++VC+ C  GD+   +DILLCDY+ C RA+HQ C  P V     P ++EDWFC  C C TDC+E + E F GT   +W+ +FP +E
Sbjct:  134 RIRNRIKTRLTNARYFQTMLDAYEQDGWGPSSHRKLKPTEELKKSSESLIHAKKEIKELLKQMDPASNELAQKETRIDEREYEAEG-LAFEKIVCSICGTGDARRGNDILLCDYSECNRAFHQKCHHPQVTE--LPHDDEDWFCTHCLCYTDCIEAVNELF-GTHYTTWEKMFPELE 306          
BLAST of mRNA_H-elongata_contig126553.1975.1 vs. uniprot
Match: A0A2P6VNL7_9CHLO (PHD-finger family homeodomain n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VNL7_9CHLO)

HSP 1 Score: 113 bits (283), Expect = 1.640e-24
Identity = 67/190 (35.26%), Postives = 105/190 (55.26%), Query Frame = 0
Query:   16 NRWDRIRSKVKNLLQKMRRDTHFIQVYQQDGWKSSGREKLKPTIELEKGKARVRGVKAELRQVAKRLTEMNPGGTRWGGLQQDNDGNIKVDEVVCTKCNKGDSDDQDDILLCDYAGCFRAYHQNCLTPPVKPEAFPSEEEDWFCWQCECLTDCLEMIEEEFPGTKLES---WKDVFPNIETGTASGSKQK 202
            N +DR+ ++++  L K+R     ++ Y  DGW+ + REK+KP  E+++ K ++   K  +R+   R  +   G         D DG +  D + C+KC   +SD+++DI+LCD   C RAYH  CL PPVK E  P E+E W C  C+   D L++I +EF GT+ E    W+ +   +E GT   S Q+
Sbjct: 1650 NNYDRMLARLRAQLSKLRHAQALVEAYAADGWRGASREKVKPVAEIKRAKDQITKCKEAIRECV-RYCDDAEGDVPIPAELFDEDGELDTDHMFCSKCRGNESDEENDIILCD-GMCNRAYHVKCLVPPVKIEDLP-EDEGWLCPACDRKMDMLDLINDEF-GTEYEDDTPWQQI---LEPGTLPRSPQQ 1832          
BLAST of mRNA_H-elongata_contig126553.1975.1 vs. uniprot
Match: A0A7S1G4N2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G4N2_9STRA)

HSP 1 Score: 108 bits (269), Expect = 2.640e-24
Identity = 66/185 (35.68%), Postives = 99/185 (53.51%), Query Frame = 0
Query:   17 RWDRIRSKVKNLLQKMRRDTHFIQVYQQDGWKSSGREKLKPTIELEKGKARVRGVKAELRQVAKRLTEMNPGGTRWGG-----LQQDNDGN--IKVDEVVCTKCNKGDSDDQDDILLCDYAGCFRAYHQNCLTPPVKPEAFPSEEED-WFCWQCECLTDCLEMIEEEFPGTKLESWKD-VFPNIE 192
            ++ + R +V   L K+R     +  Y  +GW+ + RE +KP  E+ K +  +R  K  LR +   L   N  G          L+ D  G   + ++++ C++C + D+DD +DILLCD+AGC RAYHQ C+ PP   E  P EE D WFC +C C   CLE +   F GT +   KD +FP ++
Sbjct:   19 KFQQYRKRVAATLSKVRYLKTLMDAYASNGWQDAKRESVKPKSEISKARQSLRAAKRLLRTILTAL--WNEDGADRAAVTTDLLRADAAGRELVLMEDMPCSRCGQVDADDDNDILLCDHAGCNRAYHQLCMDPPFPTECIPQEELDPWFCNRCRCFLMCLEDVNLAF-GTNMNPPKDTLFPELD 200          
BLAST of mRNA_H-elongata_contig126553.1975.1 vs. uniprot
Match: A0A8J5SWA6_ZIZPA (PHD-type domain-containing protein n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5SWA6_ZIZPA)

HSP 1 Score: 110 bits (274), Expect = 1.280e-23
Identity = 68/209 (32.54%), Postives = 109/209 (52.15%), Query Frame = 0
Query:   20 RIRSKVKNLLQKMRRDTHFIQVYQQDGWKSSGREKLKPTIELEKGKARVRGVKAELRQVAKRLTEMNPGGTRWGGLQQDNDGNIKVDEVVCTKCNKGDSDDQDDILLCDYAGCFRAYHQNCLTPPVKPEAFPSEEEDWFCWQCECLTDCLEMIEEEFPGTKL---ESWKDVFPNIETGTASGSKQKQDVVITDSDDSDDESFRDDGDIG 225
            +I  +++  L +M  +   I+ Y  +GW +   EK++P  ELE+ +A +   K ++R   + L ++ P G +  G   D++G I  +++ C  C  GD    +DI+LCD   C RA+HQNCL PP+  E  P+ E+ W C  C+C  D ++ I  +  G+ L   +SW+ VF        +G  Q        SDDS+D  F  D D+G
Sbjct:  107 KISREIRYFLNRMNYEQTLIEAYDNEGWNAKRMEKIRPEKELERARAEILRCKMKIRTAFQNL-DLIPKGKKLDGSLFDSEGRISNEDIFCGTCGTGDVTLNNDIILCD-GSCDRAFHQNCLNPPLLTEHIPAGEQAWLCPACDCKLDLMDKIN-QLQGSNLSISDSWEKVFLEAAALPPAGYVQNDPCDDLPSDDSEDGDF--DPDLG 310          
BLAST of mRNA_H-elongata_contig126553.1975.1 vs. uniprot
Match: A0A482SG36_9ARCH (PHD-type domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SG36_9ARCH)

HSP 1 Score: 100 bits (250), Expect = 7.540e-22
Identity = 66/189 (34.92%), Postives = 98/189 (51.85%), Query Frame = 0
Query:    6 KRSRN--ASDGENRWDRIRSKVKNLLQKMRRDTHFIQVYQQDGWKSSGREKLKPTIE-LEKGKARVRGVKAELRQVAKRLTEMNPGGTRWGGLQQ-DNDGNIKVDEVVCTKCNKGDSDDQDDILLCDYAGCFRAYHQNCLTPPVKPEAFPSEEEDWFCWQCECLTDCLEMIEEEFPGTKLESWKDVFPN 190
            K++RN   +   N+W    + +K     + R+ HFI+V  Q G  +   E  K   + LE  K  +R  +A        ++E N     W  L Q D +  I V E++C+KC +G+  + +DILLCD AGC RAYHQ CL P +  E    E+ DWFCWQCEC+ DC++ + E      + ++    PN
Sbjct:   42 KKARNEAVAGSTNKWKVYYNLIKRAADLVVREEHFIEVRIQTGGNNIEDENKKSAEKILEAKKGILRTFQA--------ISEENQDHVCWPQLAQGDEEDMIDVGEIMCSKC-QGEEVEGNDILLCDRAGCLRAYHQLCLEPAIDLEKMDMEK-DWFCWQCECIDDCMDYVGERLGKQHMNAYIPYTPN 220          
BLAST of mRNA_H-elongata_contig126553.1975.1 vs. uniprot
Match: A0A836CAE7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAE7_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 5.500e-18
Identity = 62/152 (40.79%), Postives = 87/152 (57.24%), Query Frame = 0
Query:    1 GDGLRKRSRN--ASDG-ENRWDRIRSKVKNLLQKMRRDTHFIQVYQQDGWKSSGREKLKPTIELEKGKARVRGVKAELRQVAKRLTEMNPGGTRWGGLQQDNDGNIKVDEVVCTKCNKGDSDDQDDILLCDYAGCFRAYHQNCLTPPVKPEA 149
            G G RKRSRN  A+ G +N +D+IR+KVKNLL K+RRD + + VY QD  +++  +K+    E  K + R+R  K                      L+ D DG I+++EV CT+C   +S + +DI+LCD  GCFRAYHQ+     V PEA
Sbjct:   46 GKGGRKRSRNTSATSGVDNPYDQIRTKVKNLLTKLRRDNYQLDVYNQDASRTASSKKMAQRQEQAKLEERIRQTK----------------------LEPDEDGQIELEEVACTECGSDESTEGNDIVLCDMEGCFRAYHQD-----VFPEA 170          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig126553.1975.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
D7FJQ3_ECTSI8.130e-13370.00PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KZT3_9PHAE3.470e-11557.44PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
A0A7S2SRQ9_9STRA2.330e-3641.62Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
L1JX63_GUITC5.950e-2937.85PHD-type domain-containing protein n=1 Tax=Guillar... [more]
A0A7S4NP67_GUITH3.030e-2837.85Hypothetical protein n=1 Tax=Guillardia theta TaxI... [more]
A0A2P6VNL7_9CHLO1.640e-2435.26PHD-finger family homeodomain n=1 Tax=Micractinium... [more]
A0A7S1G4N2_9STRA2.640e-2435.68Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A8J5SWA6_ZIZPA1.280e-2332.54PHD-type domain-containing protein n=1 Tax=Zizania... [more]
A0A482SG36_9ARCH7.540e-2234.92PHD-type domain-containing protein n=1 Tax=archaeo... [more]
A0A836CAE7_9STRA5.500e-1840.79Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001965Zinc finger, PHD-typeSMARTSM00249PHD_3coord: 109..163
e-value: 8.6E-11
score: 51.9
IPR019787Zinc finger, PHD-fingerPFAMPF00628PHDcoord: 110..164
e-value: 6.7E-9
score: 35.5
IPR019787Zinc finger, PHD-fingerPROSITEPS50016ZF_PHD_2coord: 107..165
score: 10.282
NoneNo IPR availableGENE3D2.30.30.1150coord: 22..165
e-value: 1.9E-12
score: 49.8
NoneNo IPR availablePANTHERPTHR12628:SF13HOMEOBOX PROTEIN HAT3.1coord: 9..224
NoneNo IPR availablePANTHERPTHR12628POLYCOMB-LIKE TRANSCRIPTION FACTORcoord: 9..224
IPR019786Zinc finger, PHD-type, conserved sitePROSITEPS01359ZF_PHD_1coord: 110..162
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 100..168

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig126553contigH-elongata_contig126553:541..1521 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig126553.1975.1mRNA_H-elongata_contig126553.1975.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig126553 541..1521 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig126553.1975.1 ID=prot_H-elongata_contig126553.1975.1|Name=mRNA_H-elongata_contig126553.1975.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=282bp
GDGLRKRSRNASDGENRWDRIRSKVKNLLQKMRRDTHFIQVYQQDGWKSS
GREKLKPTIELEKGKARVRGVKAELRQVAKRLTEMNPGGTRWGGLQQDND
GNIKVDEVVCTKCNKGDSDDQDDILLCDYAGCFRAYHQNCLTPPVKPEAF
PSEEEDWFCWQCECLTDCLEMIEEEFPGTKLESWKDVFPNIETGTASGSK
QKQDVVITDSDDSDDESFRDDGDIGWMSDAESVGSDEVAKLHSEAADMAE
IEDGTELPPEGGGSRSSRARARRKVRIKALGL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001965Znf_PHD
IPR019787Znf_PHD-finger
IPR019786Zinc_finger_PHD-type_CS
IPR011011Znf_FYVE_PHD