mRNA_H-elongata_contig126525.1973.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig126525.1973.1
Unique NamemRNA_H-elongata_contig126525.1973.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig126525.1973.1 vs. uniprot
Match: A0A6H5KFL7_9PHAE (Non-specific serine/threonine protein kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFL7_9PHAE)

HSP 1 Score: 221 bits (563), Expect = 4.160e-65
Identity = 113/142 (79.58%), Postives = 126/142 (88.73%), Query Frame = 1
Query:    1 RMNAQEASSLEGVGDLPAAGVRLDNRTFNSLKRDILKKRQEKGIAVGERVEGATRSTQEGVMDPRTRLLVFKMINAGLLLEVHGIVKTGKEAHVYHALAPEDPDRPGLVGARGVALKIFRTTLSEFGNRAAYIDGDPRQGYL 426
            RMNA++AS+LEGVGDL AAGVRL NRTFNSLKRDI KK+ EKG+A G RVE ATRSTQEGVMDPRTRLL+FKM N G LLEVHG+VKTGKEAHVYHALAPEDP+   + G+RGVALKIF+TTLSEFGNRAAY+DGDPR G +
Sbjct:  370 RMNARDASNLEGVGDLTAAGVRLGNRTFNSLKRDIRKKK-EKGMAAGGRVEQATRSTQEGVMDPRTRLLLFKMQNNGTLLEVHGMVKTGKEAHVYHALAPEDPE--AMTGSRGVALKIFKTTLSEFGNRAAYVDGDPRYGNM 508          
BLAST of mRNA_H-elongata_contig126525.1973.1 vs. uniprot
Match: D7FKT3_ECTSI (Non-specific serine/threonine protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKT3_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 1.120e-27
Identity = 54/70 (77.14%), Postives = 61/70 (87.14%), Query Frame = 1
Query:  217 MINAGLLLEVHGIVKTGKEAHVYHALAPEDPDRPGLVGARGVALKIFRTTLSEFGNRAAYIDGDPRQGYL 426
            M N G LLEVHG+VKTGKEAHVYHALAPEDP+   + G+RGVALKIF+TTLSEFGNRAAY+DGDPR G +
Sbjct:    1 MQNTGTLLEVHGMVKTGKEAHVYHALAPEDPE--AMTGSRGVALKIFKTTLSEFGNRAAYVDGDPRYGNM 68          
BLAST of mRNA_H-elongata_contig126525.1973.1 vs. uniprot
Match: A0A2P6N6M4_9EUKA (Non-specific serine/threonine protein kinase n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6N6M4_9EUKA)

HSP 1 Score: 104 bits (259), Expect = 3.590e-23
Identity = 51/118 (43.22%), Postives = 81/118 (68.64%), Query Frame = 1
Query:   61 VRLDNRTFNSLKRDILKKRQEKGIAVGERVEGATRSTQEGVMDPRTRLLVFKMINAGLLLEVHGIVKTGKEAHVYHALAPEDPDRPGLVGARGVALKIFRTTLSEFGNRAAYIDGDPR 414
            +R+ N  FN+L++++ ++R       G +++ AT   +E VMDPRT+ +VFKM+N+G+L E+HG+V  GKEA+VYHA+     D  G+      A+KIF+T+++EF NRA Y++GD R
Sbjct:  317 IRVSNPVFNNLRQNVRRQRTRANRVRGNKMDVAT---EEKVMDPRTKTIVFKMLNSGVLREIHGVVSAGKEANVYHAVTG---DYEGIESNVECAIKIFKTSMNEFKNRAEYLEGDYR 428          
BLAST of mRNA_H-elongata_contig126525.1973.1 vs. uniprot
Match: A0A3M6VHQ8_9STRA (Non-specific serine/threonine protein kinase n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VHQ8_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 1.330e-20
Identity = 60/140 (42.86%), Postives = 80/140 (57.14%), Query Frame = 1
Query:    1 RMNAQEASSLEGVGDLPAAGVRLDNRTFNSLKRDILK--KRQEKGIAVGERVEGATRSTQEGVMDPRTRLLVFKMINAGLLLEVHGIVKTGKEAHVYHALAPEDPDRPGLVGARGVALKIFRTTLSEFGNRAAYIDGDPR 414
            R     + S+E  G     G     + F SLK  I +  K ++KG   G RV     +T +GVMD RT L++ KMIN G L EVHG V++GKEAHVY A+  ++     +     +A+KIFRTTL+EFGNR  Y+ GD R
Sbjct:  110 RARVMGSLSMEDAGHGSGKG-----KGFTSLKESIRRQQKSEKKGFGTG-RVAAEAHATTDGVMDERTTLILQKMINRGELDEVHGCVQSGKEAHVYFAMGTDEATMQPVQ----LAVKIFRTTLNEFGNRHEYVTGDRR 239          
BLAST of mRNA_H-elongata_contig126525.1973.1 vs. uniprot
Match: A0A225VR21_9STRA (Non-specific serine/threonine protein kinase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VR21_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 1.770e-20
Identity = 59/115 (51.30%), Postives = 75/115 (65.22%), Query Frame = 1
Query:   82 FNSLKRDILKKRQEKGIAVG---ERVEGATRSTQEGVMDPRTRLLVFKMINAGLLLEVHGIVKTGKEAHVYHALAP-EDPDRPGLVGARGVALKIFRTTLSEFGNRAAYIDGDPR 414
            F SL+    ++RQ+K +  G    RVE  T +T +GVMD RT L++ KMIN G L EVHG V++GKEAHVY A+   ED  RP  +     A+KIFRTTL+EFGNR  Y+ GD R
Sbjct:  131 FTSLRES--QRRQQKSVKKGFGAGRVETETHATTDGVMDERTTLILQKMINRGELDEVHGCVQSGKEAHVYFAVGTDEDTMRPVQL-----AVKIFRTTLNEFGNRHEYVTGDRR 238          
BLAST of mRNA_H-elongata_contig126525.1973.1 vs. uniprot
Match: A0A329SP27_9STRA (Non-specific serine/threonine protein kinase n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SP27_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 2.460e-20
Identity = 57/114 (50.00%), Postives = 74/114 (64.91%), Query Frame = 1
Query:   82 FNSLKRDILK--KRQEKGIAVGERVEGATRSTQEGVMDPRTRLLVFKMINAGLLLEVHGIVKTGKEAHVYHALAPEDPD-RPGLVGARGVALKIFRTTLSEFGNRAAYIDGDPR 414
            F SL+    +  K ++KG   G RVE  T +T +GVMD RT L++ KMIN G L EVHG V++GKEAHVY A+  ++   RP  +     A+KIFRTTL+EFGNR  Y+ GD R
Sbjct:   14 FTSLRESQRRQYKSEKKGFGSG-RVESETHATTDGVMDERTTLILQKMINKGELDEVHGCVQSGKEAHVYFAMGTDEATMRPVQL-----AVKIFRTTLNEFGNRHEYVTGDRR 121          
BLAST of mRNA_H-elongata_contig126525.1973.1 vs. uniprot
Match: G4YZI1_PHYSP (Non-specific serine/threonine protein kinase n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YZI1_PHYSP)

HSP 1 Score: 95.5 bits (236), Expect = 4.130e-20
Identity = 57/114 (50.00%), Postives = 74/114 (64.91%), Query Frame = 1
Query:   82 FNSLKRDILK--KRQEKGIAVGERVEGATRSTQEGVMDPRTRLLVFKMINAGLLLEVHGIVKTGKEAHVYHALAPEDPD-RPGLVGARGVALKIFRTTLSEFGNRAAYIDGDPR 414
            F SL+    +  K ++KG   G RVE  T +T +GVMD RT L++ KMIN G L EVHG V++GKEAHVY A+  ++   RP  +     A+KIFRTTL+EFGNR  Y+ GD R
Sbjct:  133 FTSLRESQRRQQKNEKKGFGAG-RVEAETHATADGVMDERTTLILQKMINRGELDEVHGCVQSGKEAHVYFAVGTDEVTMRPVQL-----AVKIFRTTLNEFGNRHEYVTGDRR 240          
BLAST of mRNA_H-elongata_contig126525.1973.1 vs. uniprot
Match: A0A6A4F923_9STRA (Non-specific serine/threonine protein kinase n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A4F923_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 5.010e-20
Identity = 62/138 (44.93%), Postives = 81/138 (58.70%), Query Frame = 1
Query:   10 AQEASSLEGVGDLPAAGVRLDNRTFNSLKRDILK--KRQEKGIAVGERVEGATRSTQEGVMDPRTRLLVFKMINAGLLLEVHGIVKTGKEAHVYHALAPED-PDRPGLVGARGVALKIFRTTLSEFGNRAAYIDGDPR 414
            A+ A SL        AG     + F SL+    +  K ++KG   G RVE    +T +GVMD RT L++ KMIN G L EVHG V++GKEAHVY A+  ++   RP  +     A+KIFRTTL+EFGNR  Y+ GD R
Sbjct:  111 ARVAGSLSMEDAAHGAG---SGKGFTSLRESQRRQHKNEKKGFGAG-RVEAEAHATADGVMDERTTLILQKMINRGELDEVHGCVQSGKEAHVYFAVGTDEVTSRPVQL-----AVKIFRTTLNEFGNRHEYVTGDRR 239          
BLAST of mRNA_H-elongata_contig126525.1973.1 vs. uniprot
Match: T1JPM7_TETUR (Serine/threonine-protein kinase RIO3 n=2 Tax=Tetranychus urticae TaxID=32264 RepID=T1JPM7_TETUR)

HSP 1 Score: 95.1 bits (235), Expect = 5.920e-20
Identity = 56/127 (44.09%), Postives = 82/127 (64.57%), Query Frame = 1
Query:   37 VGDLPAAGVRLDNRTFNSLKRDILKKRQEKGIAVGERVEGAT-RSTQEGVMDPRTRLLVFKMINAGLLLEVHGIVKTGKEAHVYHALAPEDPDRPGLVGARGVALKIFRTTLSEFGNRAAYIDGDPR 414
             GD     ++L+N  FN+LK  +  K++ K  A   R+  A  +ST E VMD +TRLL++K++N G+L EV+G + TGKE+HVYH +   DP++    G   VA+K+++TTL+EF NR AYI  D R
Sbjct:  249 TGDGGGFDMKLNNNVFNALK--VHSKKESKRAA---RLRQAKEKSTVEHVMDEKTRLLLYKLVNRGILDEVNGTISTGKESHVYHGIGG-DPEKQITCGE--VAIKVYKTTLNEFKNREAYIRDDHR 367          
BLAST of mRNA_H-elongata_contig126525.1973.1 vs. uniprot
Match: A0A443QHN7_9ACAR (Serine/threonine-protein kinase RIO3 n=1 Tax=Dinothrombium tinctorium TaxID=1965070 RepID=A0A443QHN7_9ACAR)

HSP 1 Score: 94.4 bits (233), Expect = 9.940e-20
Identity = 56/139 (40.29%), Postives = 83/139 (59.71%), Query Frame = 1
Query:    1 RMNAQEASSLE-GVGDLPAAGVRLDNRTFNSLKRDILKKRQEKGIAVGERVEGATRSTQEGVMDPRTRLLVFKMINAGLLLEVHGIVKTGKEAHVYHALAPEDPDRPGLVGARGVALKIFRTTLSEFGNRAAYIDGDPR 414
            R NA +A   +   GD     ++L+N  +N+LK   + +    G       E   +S+ EGVMD  TRL+++K++N GLL EV+GIV TGKE++VYH +   DP++    G   VA+K+++TTL+EF NR  YI  D R
Sbjct:  177 RRNACKAMDFDISTGDGGGFDMKLNNNVYNALKVHSMSE----GKRAARLHEKKEKSSAEGVMDETTRLILYKLVNRGLLEEVNGIVSTGKESNVYHGIGG-DPEKQITTGE--VAIKVYKTTLNEFKNRDPYIKDDFR 308          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig126525.1973.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KFL7_9PHAE4.160e-6579.58Non-specific serine/threonine protein kinase n=1 T... [more]
D7FKT3_ECTSI1.120e-2777.14Non-specific serine/threonine protein kinase n=1 T... [more]
A0A2P6N6M4_9EUKA3.590e-2343.22Non-specific serine/threonine protein kinase n=1 T... [more]
A0A3M6VHQ8_9STRA1.330e-2042.86Non-specific serine/threonine protein kinase n=2 T... [more]
A0A225VR21_9STRA1.770e-2051.30Non-specific serine/threonine protein kinase n=1 T... [more]
A0A329SP27_9STRA2.460e-2050.00Non-specific serine/threonine protein kinase n=1 T... [more]
G4YZI1_PHYSP4.130e-2050.00Non-specific serine/threonine protein kinase n=1 T... [more]
A0A6A4F923_9STRA5.010e-2044.93Non-specific serine/threonine protein kinase n=5 T... [more]
T1JPM7_TETUR5.920e-2044.09Serine/threonine-protein kinase RIO3 n=2 Tax=Tetra... [more]
A0A443QHN7_9ACAR9.940e-2040.29Serine/threonine-protein kinase RIO3 n=1 Tax=Dinot... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig126525contigH-elongata_contig126525:578..1781 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.2
Seed ortholog evalue2.6e-23
Seed eggNOG ortholog2880.D7FKT3
KEGG koko:K07178
KEGG Pathwayko03008,map03008
EggNOG free text desc.positive regulation of rRNA processing
EggNOG OGsCOG1718@1,KOG2270@2759
EC2.7.11.1
COG Functional cat.DT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko03009
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRIO-like kinase
Ec32 orthologEc-17_001300.1
Exons2
Model size441
Cds size438
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig126525.1973.1prot_H-elongata_contig126525.1973.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig126525 578..1778 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929749.7884793-CDS-H-elongata_contig126525:577..7751622929749.7884793-CDS-H-elongata_contig126525:577..775Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig126525 578..775 -
1691679142.8044257-CDS-H-elongata_contig126525:577..7751691679142.8044257-CDS-H-elongata_contig126525:577..775Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig126525 578..775 -
1622929749.8075082-CDS-H-elongata_contig126525:1538..17781622929749.8075082-CDS-H-elongata_contig126525:1538..1778Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig126525 1539..1778 -
1691679142.814944-CDS-H-elongata_contig126525:1538..17781691679142.814944-CDS-H-elongata_contig126525:1538..1778Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig126525 1539..1778 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929749.821994-UTR-H-elongata_contig126525:1778..17811622929749.821994-UTR-H-elongata_contig126525:1778..1781Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig126525 1779..1781 -
1691679142.8234637-UTR-H-elongata_contig126525:1778..17811691679142.8234637-UTR-H-elongata_contig126525:1778..1781Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig126525 1779..1781 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig126525.1973.1

>prot_H-elongata_contig126525.1973.1 ID=prot_H-elongata_contig126525.1973.1|Name=mRNA_H-elongata_contig126525.1973.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=146bp
MNAQEASSLEGVGDLPAAGVRLDNRTFNSLKRDILKKRQEKGIAVGERVE
GATRSTQEGVMDPRTRLLVFKMINAGLLLEVHGIVKTGKEAHVYHALAPE
DPDRPGLVGARGVALKIFRTTLSEFGNRAAYIDGDPRQGYLLAFS*
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mRNA from alignment at H-elongata_contig126525:578..1781-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig126525.1973.1 ID=mRNA_H-elongata_contig126525.1973.1|Name=mRNA_H-elongata_contig126525.1973.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1204bp|location=Sequence derived from alignment at H-elongata_contig126525:578..1781- (Himanthalia elongata Himel1 dioecious)
AGGATGAACGCACAGGAAGCATCCAGTCTTGAAGGGGTCGGCGACCTCCC AGCGGCAGGGGTGAGGCTCGACAACCGCACCTTCAACAGTCTAAAGCGCG ACATCCTGAAGAAGAGGCAGGAGAAGGGCATCGCCGTGGGGGAGCGGGTA GAGGGGGCGACACGCTCGACCCAGGAGGGCGTCATGGATCCCCGCACACG TCTGCTGGTGTTCAAGATGATCAACGCAGGCTTGCTCCTCGAGGTTCGCT GGCAGGATCACTGCGATTAAATAATAATAAAAATACGCCTTTCATGTTTG ACTATGGTCTAGGCATTGCCGTGCTGCGATGCCGTGCACCGCACGCTACA TTTGGGCTCTGGTGGCTCGATCGGAGGGCAATATCGTCGTGCGCGCGCCC TGCTTTTCCCCTTACCATGGCTGAACGTGCTTTTCACATGTCTTGAGAGA GGGAGAGAGAGAGAGAGAGAGAAAGTTTTCTTTAAAAAACATATGAACTC GTTCAAACCCTCCGAACATCCACGCCTTCTTAGCACCGTGAGAGGTACAA TCCACGGAACCAACTATCGTCAGGTTCGAATGTGTACATTACTACCTTTT GAGCATTAAATCGTTACATGTGTGGTAACTCATGTTCCCCAGGAGTAAGC TCATCGGGTCAACGGTATAATTTCGGGAAGGAGTCCACCATTATCCCGTA CACTTCCATTATTCATCGTGTGGGAACGCCAAACCAGAGCTATACTATAG CTTAGAGAGTGGGTTGTAAAGAGGAAGGGGGGGTTGGTACAGGTTGCTTC TATTGCGTTGTACATTGGGGAGGGGAGGAATAGAAAAAAAAGAGCCAGCA AATATAGAGCATATAGAGGTAAGAAGGGCCTCGGTTCGATGAACGGTGCA GTGCCACTTTTTTCTCTGCAGGATGTTCTAGGGCATCGAATAATATCACA AAGTTCATGTTGATATATATAATTGTTTTCTGCGGCTCTGTGGTTTTGCA CGTTAGGTGCATGGCATCGTCAAGACGGGGAAGGAGGCGCACGTGTACCA CGCGCTCGCCCCAGAGGACCCCGATCGCCCGGGGCTCGTAGGCGCCCGTG GGGTGGCGCTAAAAATATTCAGGACCACCTTGAGCGAGTTCGGCAACAGG GCGGCCTACATCGACGGAGACCCGAGGCAAGGTTACCTTCTTGCGTTCTC TTGA
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Coding sequence (CDS) from alignment at H-elongata_contig126525:578..1781-

>mRNA_H-elongata_contig126525.1973.1 ID=mRNA_H-elongata_contig126525.1973.1|Name=mRNA_H-elongata_contig126525.1973.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=876bp|location=Sequence derived from alignment at H-elongata_contig126525:578..1781- (Himanthalia elongata Himel1 dioecious)
ATGAACGCACAGGAAGCATCCAGTCTTGAAGGGGTCGGCGACCTCCCAGC
GGCAGGGGTGAGGCTCGACAACCGCACCTTCAACAGTCTAAAGCGCGACA
TCCTGAAGAAGAGGCAGGAGAAGGGCATCGCCGTGGGGGAGCGGGTAGAG
GGGGCGACACGCTCGACCCAGGAGGGCGTCATGGATCCCCGCACACGTCT
GCTGGTGTTCAAGATGATCAACGCAGGCTTGCTCCTCGAGATGAACGCAC
AGGAAGCATCCAGTCTTGAAGGGGTCGGCGACCTCCCAGCGGCAGGGGTG
AGGCTCGACAACCGCACCTTCAACAGTCTAAAGCGCGACATCCTGAAGAA
GAGGCAGGAGAAGGGCATCGCCGTGGGGGAGCGGGTAGAGGGGGCGACAC
GCTCGACCCAGGAGGGCGTCATGGATCCCCGCACACGTCTGCTGGTGTTC
AAGATGATCAACGCAGGCTTGCTCCTCGAGGTGCATGGCATCGTCAAGAC
GGGGAAGGAGGCGCACGTGTACCACGCGCTCGCCCCAGAGGACCCCGATC
GCCCGGGGCTCGTAGGCGCCCGTGGGGTGGCGCTAAAAATATTCAGGACC
ACCTTGAGCGAGTTCGGCAACAGGGCGGCCTACATCGACGGAGACCCGAG
GCAAGGTTACCTTCTTGCGTTCTCTTGAGTGCATGGCATCGTCAAGACGG
GGAAGGAGGCGCACGTGTACCACGCGCTCGCCCCAGAGGACCCCGATCGC
CCGGGGCTCGTAGGCGCCCGTGGGGTGGCGCTAAAAATATTCAGGACCAC
CTTGAGCGAGTTCGGCAACAGGGCGGCCTACATCGACGGAGACCCGAGGC
AAGGTTACCTTCTTGCGTTCTCTTGA
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