mRNA_H-elongata_contig126524.1972.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig126524.1972.1
Unique NamemRNA_H-elongata_contig126524.1972.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig126524.1972.1 vs. uniprot
Match: A0A6H5K6D4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6D4_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 8.140e-26
Identity = 51/62 (82.26%), Postives = 59/62 (95.16%), Query Frame = 1 
Query:    1 KITLRGLVLPVGGVRDKVLAARRGGIRHVLLPARNRGDLDELALDPAEGLRFTFVETLGDVL 186
            +ITLRGLVLPVGGVRDKVLAARRGGIRH+LLP+RNRGDL+E+  + AEGLRFTFVE++GDVL
Sbjct:  958 EITLRGLVLPVGGVRDKVLAARRGGIRHILLPSRNRGDLEEIPSEAAEGLRFTFVESIGDVL 1019
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BLAST of mRNA_H-elongata_contig126524.1972.1 vs. uniprot
Match: D8LGC2_ECTSI (Lon protease homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGC2_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 8.140e-26
Identity = 51/62 (82.26%), Postives = 59/62 (95.16%), Query Frame = 1 
Query:    1 KITLRGLVLPVGGVRDKVLAARRGGIRHVLLPARNRGDLDELALDPAEGLRFTFVETLGDVL 186
            +ITLRGLVLPVGGVRDKVLAARRGGIRH+LLP+RNRGDL+E+  + AEGLRFTFVE++GDVL
Sbjct: 1011 EITLRGLVLPVGGVRDKVLAARRGGIRHILLPSRNRGDLEEIPSEAAEGLRFTFVESIGDVL 1072
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BLAST of mRNA_H-elongata_contig126524.1972.1 vs. uniprot
Match: A0A835ZDR9_9STRA (Lon protease C-terminal proteolytic domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDR9_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 5.050e-17
Identity = 39/58 (67.24%), Postives = 48/58 (82.76%), Query Frame = 1 
Query:    1 KITLRGLVLPVGGVRDKVLAARRGGIRHVLLPARNRGDLDELALDPAEGLRFTFVETL 174
            ++TLRGLVLPVGGV+DKVLAA RGG+RHV+LP RNR DL++L  D  + LRF+ V TL
Sbjct:  860 EVTLRGLVLPVGGVKDKVLAAHRGGLRHVILPQRNRRDLEDLPADVRDALRFSCVSTL 917
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BLAST of mRNA_H-elongata_contig126524.1972.1 vs. uniprot
Match: A0A4Q3JN36_9BURK (Endopeptidase La (Fragment) n=1 Tax=Oxalobacteraceae bacterium TaxID=1871070 RepID=A0A4Q3JN36_9BURK)

HSP 1 Score: 77.0 bits (188), Expect = 7.630e-17
Identity = 37/62 (59.68%), Postives = 48/62 (77.42%), Query Frame = 1 
Query:    1 KITLRGLVLPVGGVRDKVLAARRGGIRHVLLPARNRGDLDELALDPAEGLRFTFVETLGDVL 186
            +I+LRGLVLPVGG+++KVLAA R GI  VLLPARNR DLD++  D    LRF +++T+ D L
Sbjct:   43 EISLRGLVLPVGGIKEKVLAALRAGISTVLLPARNRKDLDDVPADARAQLRFVYLDTIDDAL 104
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BLAST of mRNA_H-elongata_contig126524.1972.1 vs. uniprot
Match: A0A011PYB7_9PROT (Endopeptidase La n=2 Tax=unclassified Candidatus Accumulibacter TaxID=2619054 RepID=A0A011PYB7_9PROT)

HSP 1 Score: 78.2 bits (191), Expect = 8.140e-17
Identity = 37/62 (59.68%), Postives = 48/62 (77.42%), Query Frame = 1 
Query:    1 KITLRGLVLPVGGVRDKVLAARRGGIRHVLLPARNRGDLDELALDPAEGLRFTFVETLGDVL 186
            +I+LRGLVLPVGG++DKVLAA R GI  VLLPARNR DLDE+  +  E L F F++++ D +
Sbjct:   73 EISLRGLVLPVGGIKDKVLAAMRAGITRVLLPARNRRDLDEVPAEAREKLEFVFLDSVDDAM 134
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BLAST of mRNA_H-elongata_contig126524.1972.1 vs. uniprot
Match: A0A080LSC2_9PROT (Endopeptidase La n=1 Tax=Candidatus Accumulibacter sp. BA-91 TaxID=1454002 RepID=A0A080LSC2_9PROT)

HSP 1 Score: 79.0 bits (193), Expect = 2.290e-16
Identity = 38/62 (61.29%), Postives = 48/62 (77.42%), Query Frame = 1 
Query:    1 KITLRGLVLPVGGVRDKVLAARRGGIRHVLLPARNRGDLDELALDPAEGLRFTFVETLGDVL 186
            +I+LRGLVLPVGG++DKVLAA R GI+ VLLPARNR DLDE+  +  E L F F+E + D +
Sbjct:  177 EISLRGLVLPVGGIKDKVLAAMRAGIQRVLLPARNRRDLDEVPQEAKERLEFVFLENVDDAV 238
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BLAST of mRNA_H-elongata_contig126524.1972.1 vs. uniprot
Match: A0A7S2MIJ9_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MIJ9_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 3.210e-16
Identity = 38/60 (63.33%), Postives = 46/60 (76.67%), Query Frame = 1 
Query:    7 TLRGLVLPVGGVRDKVLAARRGGIRHVLLPARNRGDLDELALDPAEGLRFTFVETLGDVL 186
            TLRG V+PVGG+RDKVLAA RGG+RHV++P RNR DLDEL  D  E +RF  V TL + +
Sbjct:  450 TLRGRVMPVGGIRDKVLAAHRGGVRHVVVPVRNRSDLDELPEDVRESMRFDCVTTLIEAI 509
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BLAST of mRNA_H-elongata_contig126524.1972.1 vs. uniprot
Match: A0A524N6P2_9DELT (Endopeptidase La (Fragment) n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A524N6P2_9DELT)

HSP 1 Score: 74.7 bits (182), Expect = 3.790e-16
Identity = 33/62 (53.23%), Postives = 48/62 (77.42%), Query Frame = 1 
Query:    1 KITLRGLVLPVGGVRDKVLAARRGGIRHVLLPARNRGDLDELALDPAEGLRFTFVETLGDVL 186
            +ITLRG VLPVGG+++K+LAARR GIR + +P RNR D++E+     EG+ F +V+ +G+VL
Sbjct:    5 EITLRGAVLPVGGIKEKMLAARRAGIREIFVPGRNRKDVEEIDASLREGISFHYVDEVGEVL 66
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BLAST of mRNA_H-elongata_contig126524.1972.1 vs. uniprot
Match: A0A7V4YT71_9BACT (Endopeptidase La n=1 Tax=bacterium TaxID=1869227 RepID=A0A7V4YT71_9BACT)

HSP 1 Score: 75.5 bits (184), Expect = 4.400e-16
Identity = 34/62 (54.84%), Postives = 49/62 (79.03%), Query Frame = 1 
Query:    1 KITLRGLVLPVGGVRDKVLAARRGGIRHVLLPARNRGDLDELALDPAEGLRFTFVETLGDVL 186
            +ITLRG VLPVGG+++KVLAA+R GI+ V+LP +N+ D++E+  D  EGL+F FV TL + +
Sbjct:   57 EITLRGAVLPVGGIKEKVLAAKRAGIKEVILPEKNKKDMEEIPGDGKEGLQFHFVNTLEEAI 118
[Close]
BLAST of mRNA_H-elongata_contig126524.1972.1 vs. uniprot
Match: A0A349ULG9_9BACT (Endopeptidase La (Fragment) n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A349ULG9_9BACT)

HSP 1 Score: 75.9 bits (185), Expect = 7.610e-16
Identity = 36/62 (58.06%), Postives = 47/62 (75.81%), Query Frame = 1 
Query:    1 KITLRGLVLPVGGVRDKVLAARRGGIRHVLLPARNRGDLDELALDPAEGLRFTFVETLGDVL 186
            ++TLRGLVLPVGG+++KVLAARR GI  V+LP RNR DL ++  D  + LRF F  ++ DVL
Sbjct:   76 EVTLRGLVLPVGGIKEKVLAARRAGIGTVILPERNRNDLVDVPTDARKDLRFVFARSVDDVL 137
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig126524.1972.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K6D4_9PHAE8.140e-2682.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LGC2_ECTSI8.140e-2682.26Lon protease homolog n=1 Tax=Ectocarpus siliculosu... [more]
A0A835ZDR9_9STRA5.050e-1767.24Lon protease C-terminal proteolytic domain-contain... [more]
A0A4Q3JN36_9BURK7.630e-1759.68Endopeptidase La (Fragment) n=1 Tax=Oxalobacterace... [more]
A0A011PYB7_9PROT8.140e-1759.68Endopeptidase La n=2 Tax=unclassified Candidatus A... [more]
A0A080LSC2_9PROT2.290e-1661.29Endopeptidase La n=1 Tax=Candidatus Accumulibacter... [more]
A0A7S2MIJ9_9STRA3.210e-1663.33Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A524N6P2_9DELT3.790e-1653.23Endopeptidase La (Fragment) n=1 Tax=Myxococcales b... [more]
A0A7V4YT71_9BACT4.400e-1654.84Endopeptidase La n=1 Tax=bacterium TaxID=1869227 R... [more]
A0A349ULG9_9BACT7.610e-1658.06Endopeptidase La (Fragment) n=1 Tax=Phycisphaerale... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig126524contigH-elongata_contig126524:7..192 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score108.6
Seed ortholog evalue1.1e-21
Seed eggNOG ortholog2880.D8LGC2
Preferred nameLONP2
KEGG koko:K01338,ko:K08675
KEGG Pathwayko04112,map04112
GOsGO:0000002,GO:0002020,GO:0003674,GO:0003824,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005777,GO:0005782,GO:0005829,GO:0006139,GO:0006259,GO:0006508,GO:0006605,GO:0006625,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006950,GO:0006996,GO:0007005,GO:0007031,GO:0007275,GO:0008104,GO:0008150,GO:0008152,GO:0008233,GO:0009266,GO:0009408,GO:0009628,GO:0009791,GO:0009894,GO:0009987,GO:0010033,GO:0010467,GO:0010565,GO:0014070,GO:0015031,GO:0015833,GO:0015919,GO:0016043,GO:0016485,GO:0016558,GO:0016560,GO:0016787,GO:0017038,GO:0019216,GO:0019217,GO:0019222,GO:0019538,GO:0019899,GO:0022622,GO:0031323,GO:0031329,GO:0031907,GO:0031974,GO:0031998,GO:0032042,GO:0032501,GO:0032502,GO:0033036,GO:0033365,GO:0034613,GO:0034641,GO:0040007,GO:0042221,GO:0042579,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043574,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0044743,GO:0045184,GO:0046320,GO:0046483,GO:0046907,GO:0048364,GO:0048527,GO:0048528,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0050994,GO:0051179,GO:0051234,GO:0051604,GO:0051641,GO:0051649,GO:0055085,GO:0062012,GO:0065002,GO:0065007,GO:0070013,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071806,GO:0071840,GO:0072594,GO:0072662,GO:0072663,GO:0080090,GO:0090304,GO:0090696,GO:0099402,GO:0140096,GO:1901360,GO:1901564
EggNOG free text desc.ATP-dependent serine protease that mediates the selective degradation of misfolded, unassembled or oxidatively damaged polypeptides as well as certain short-lived regulatory proteins in the mitochondrial matrix. May also have a chaperone function in the assembly of inner membrane protein complexes. Participates in the regulation of mitochondrial gene expression and in the maintenance of the integrity of the mitochondrial genome. Binds to mitochondrial
EggNOG OGsCOG0466@1,KOG2004@2759
EC3.4.21.53
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko03029
Hectar predicted targeting categoryother localisation
Exons1
Model size186
Cds size186
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929749.673151-CDS-H-elongata_contig126524:6..1921622929749.673151-CDS-H-elongata_contig126524:6..192Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig126524 7..192 +
1691679142.7882593-CDS-H-elongata_contig126524:6..1921691679142.7882593-CDS-H-elongata_contig126524:6..192Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig126524 7..192 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig126524.1972.1prot_H-elongata_contig126524.1972.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig126524 7..192 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig126524.1972.1

>prot_H-elongata_contig126524.1972.1 ID=prot_H-elongata_contig126524.1972.1|Name=mRNA_H-elongata_contig126524.1972.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=62bp
KITLRGLVLPVGGVRDKVLAARRGGIRHVLLPARNRGDLDELALDPAEGL
RFTFVETLGDVL
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mRNA from alignment at H-elongata_contig126524:7..192+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig126524.1972.1 ID=mRNA_H-elongata_contig126524.1972.1|Name=mRNA_H-elongata_contig126524.1972.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=186bp|location=Sequence derived from alignment at H-elongata_contig126524:7..192+ (Himanthalia elongata Himel1 dioecious)
AAGATTACCTTGCGGGGTTTAGTGCTGCCCGTGGGAGGTGTGCGCGATAA
GGTGCTCGCAGCGCGTCGCGGCGGGATCCGGCACGTGCTTCTCCCAGCTC
GTAACCGGGGAGACTTGGATGAGCTCGCCCTAGATCCGGCCGAGGGGTTA
AGGTTCACGTTCGTGGAGACCCTGGGCGACGTCTTG
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Coding sequence (CDS) from alignment at H-elongata_contig126524:7..192+

>mRNA_H-elongata_contig126524.1972.1 ID=mRNA_H-elongata_contig126524.1972.1|Name=mRNA_H-elongata_contig126524.1972.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=372bp|location=Sequence derived from alignment at H-elongata_contig126524:7..192+ (Himanthalia elongata Himel1 dioecious)
AAGATTACCTTGCGGGGTTTAGTGCTGCCCGTGGGAGGTGTGCGCGATAA
GGTGCTCGCAGCGCGTCGCGGCGGGATCCGGCACGTGCTTCTCCCAGCTC
GTAACCGGGGAGACTTGGATGAGCTCGCCCTAGATCCGGCCGAGGGGTTA
AGGTTCACGTTCGTGGAGACCCTGGGCGACGTCTTGAAGATTACCTTGCG
GGGTTTAGTGCTGCCCGTGGGAGGTGTGCGCGATAAGGTGCTCGCAGCGC
GTCGCGGCGGGATCCGGCACGTGCTTCTCCCAGCTCGTAACCGGGGAGAC
TTGGATGAGCTCGCCCTAGATCCGGCCGAGGGGTTAAGGTTCACGTTCGT
GGAGACCCTGGGCGACGTCTTG
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