mRNA_H-elongata_contig126505.1970.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig126505.1970.1
Unique NamemRNA_H-elongata_contig126505.1970.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig126505.1970.1 vs. uniprot
Match: D8LI15_ECTSI (Folate/biopterin transporter n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI15_ECTSI)

HSP 1 Score: 194 bits (492), Expect = 1.070e-56
Identity = 88/112 (78.57%), Postives = 102/112 (91.07%), Query Frame = 1
Query:    1 RTQRESMTNMGNIQASGYIARYFGSALGAIGGAVLYNDDTWGWGLSISTLFWINGLVPLFLVIPLMPFLFEEPKPKEEGVLRRHVNELWDLVQKKAVWKPMIFVYIYNAFMV 336
            +TQRESM+NMGNIQASGYIARYFGSA+GA+GGAVLYN DTWGWGL+IS LFWIN LVPL LV+PLMPFL E+ KP+E+GVL+RH +ELW LVQK AVW+PMIFVY+YNA M+
Sbjct:  248 KTQRESMSNMGNIQASGYIARYFGSAIGAVGGAVLYNKDTWGWGLTISELFWINALVPLVLVMPLMPFLLEDKKPREKGVLKRHSDELWTLVQKTAVWRPMIFVYLYNALML 359          
BLAST of mRNA_H-elongata_contig126505.1970.1 vs. uniprot
Match: A0A835YTY0_9STRA (Folate/biopterin transporter n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTY0_9STRA)

HSP 1 Score: 126 bits (317), Expect = 1.130e-31
Identity = 62/115 (53.91%), Postives = 78/115 (67.83%), Query Frame = 1
Query:    1 RTQRESMTNMGNIQASGYIARYFGSALGAIGGAVLYNDDTWGWGLSISTLFWINGLVPLFLVIPLMPFLFEEPK---PKEEGVLRRHVNELWDLVQKKAVWKPMIFVYIYNAFMV 336
            RT+ ES  + G +QASGYIAR FGSA+G+  GA++YN   WGWGLSI+ +  IN +VPL  V P +P+L E  K   P    V R H  E+W LVQK+ VW+PM FVYIYNA M+
Sbjct:  231 RTKLESTKHRGTVQASGYIARAFGSAVGSTAGALVYNQANWGWGLSIAQIMLINAVVPLACVSPFIPYLKETVKTSLPTARHVWRTHWQEIWALVQKRVVWQPMTFVYIYNAMMI 345          
BLAST of mRNA_H-elongata_contig126505.1970.1 vs. uniprot
Match: A0A6V1WMI5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1WMI5_HETAK)

HSP 1 Score: 100 bits (250), Expect = 1.800e-22
Identity = 49/112 (43.75%), Postives = 67/112 (59.82%), Query Frame = 1
Query:    1 RTQRESMTNMGNIQASGYIARYFGSALGAIGGAVLYNDDTWGWGLSISTLFWINGLVPLFLVIPLMPFLFEEPKPKEEGVLRRHVNELWDLVQKKAVWKPMIFVYIYNAFMV 336
            R+Q ES    G IQA GYI R+ GS LG+  GAVLYN DTWGWGL+   +F +N  VP  ++ P M +L +    K   V  +   E+W  VQK+ +W+PM F++ YN   +
Sbjct:  186 RSQHESDDERGTIQAQGYIIRFVGSILGSAMGAVLYNRDTWGWGLTTPQMFALNAFVPFVVLYPAMAYLRDASDLKPIPVPIQ-CREIWGAVQKRNIWQPMAFIFAYNVMQI 296          
BLAST of mRNA_H-elongata_contig126505.1970.1 vs. uniprot
Match: W7TKM6_9STRA (Folate biopterin transporter n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TKM6_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 1.680e-20
Identity = 40/112 (35.71%), Postives = 72/112 (64.29%), Query Frame = 1
Query:    1 RTQRESMTNMGNIQASGYIARYFGSALGAIGGAVLYNDDTWGWGLSISTLFWINGLVPLFLVIPLMPFLFEEPKPKEEGVLRRHVNELWDLVQKKAVWKPMIFVYIYNAFMV 336
            R++ E    +G++Q+ GY+ARY G+ +GA  G +LYN+  W WGLSIS+++ +NGL  + LV+P    L +  +  E   L+  + ++W +VQ++ ++ PM F+ +YN  ++
Sbjct:  257 RSKLEPEGRVGHMQSVGYVARYVGNVVGATLGTILYNEKEWHWGLSISSIYLLNGLAAVVLVLPFTYHLSDPNQVLEARSLKEQLGDIWKMVQRRTIYVPMSFIAVYNMLLI 368          
BLAST of mRNA_H-elongata_contig126505.1970.1 vs. uniprot
Match: A0A7S1TWA3_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TWA3_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 2.020e-19
Identity = 45/114 (39.47%), Postives = 66/114 (57.89%), Query Frame = 1
Query:    1 RTQRESMTNMGNIQASGYIARYFGSALGAIGGAVLYNDDTWGWGLSISTLFWINGLVPLFLVIPLMPFLFEEPKPKEEGV--LRRHVNELWDLVQKKAVWKPMIFVYIYNAFMV 336
            R++ E     G +QA+ Y  R+FGS LGA  G ++YN D WGWGLS + + ++ G+ PL  V+P    ++E+P   E G   +     ++W+ V   AVW PM FVYIYN   +
Sbjct:  265 RSRYEPSEGRGQMQATCYALRFFGSVLGAGTGTLVYNKDAWGWGLSFAQVCFVLGVFPLLFVVPFAYMVWEKPL-SEAGAKSVPEQCRDIWNTVTLDAVWMPMTFVYIYNVMQI 377          
BLAST of mRNA_H-elongata_contig126505.1970.1 vs. uniprot
Match: A0A067BNQ4_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BNQ4_SAPPC)

HSP 1 Score: 61.2 bits (147), Expect = 1.700e-8
Identity = 38/112 (33.93%), Postives = 62/112 (55.36%), Query Frame = 1
Query:    7 QRESMTNMGNIQASGYIARY-FGSALGAIGGAVLYNDDTWG---WGLSISTLFWINGLVPLFLVIPLMPFLFEEPKPKEEGVLRRHVNELWDLVQKKAVWKPMIFVYIYNAF 330
            QRE +   G +Q+  Y  R+ F + +GAI G  L ++   G   W + ++  FWI   +P  + IP++ F  ++ K  E      + N+LW LVQK+AVW+ +IF + +N F
Sbjct:  183 QREPLAVRGRLQSMIYGTRFVFAAIIGAICGFCLNSERFAGDFDWDIGVNGYFWILA-IPSVINIPVVWFFIKDTK-HEAVQFSVYFNQLWTLVQKRAVWQVLIFNFFFNFF 292          
BLAST of mRNA_H-elongata_contig126505.1970.1 vs. uniprot
Match: A0A067CA45_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CA45_SAPPC)

HSP 1 Score: 60.1 bits (144), Expect = 4.320e-8
Identity = 38/112 (33.93%), Postives = 61/112 (54.46%), Query Frame = 1
Query:    7 QRESMTNMGNIQASGYIARY-FGSALGAIGGAVLYNDDTWG---WGLSISTLFWINGLVPLFLVIPLMPFLFEEPKPKEEGVLRRHVNELWDLVQKKAVWKPMIFVYIYNAF 330
            QRE +   G +Q+  Y  R+ F + + AI G  L +    G   W + ++  FWI   VP  + IP++ F  ++ K  E      + N+LW LVQK+AVW+ +IF +++N F
Sbjct:  183 QREPLAVRGRLQSYIYGTRFVFSAIISAICGFCLNSKQFAGQFDWDIGVNGYFWILA-VPAVINIPIVWFCIKDTKT-EAVQFSVYFNQLWTLVQKRAVWQVLIFNFVFNFF 292          
BLAST of mRNA_H-elongata_contig126505.1970.1 vs. uniprot
Match: A0A7S2WKC0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WKC0_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 6.130e-8
Identity = 23/62 (37.10%), Postives = 39/62 (62.90%), Query Frame = 1
Query:  157 INGLVPLFLVIPLMPFLFEEPKPKEEGVLRRHVNELWDLVQKKAVWKPMIFVYIYNAFMVRD 342
            +  L+P+F + PL  FLF+         LR+ + E+W+LVQ++ VW PM F+YI++A  + +
Sbjct:    6 LQALIPIFTLAPLCTFLFDPGDGFRP--LRQQLEEIWELVQRRTVWYPMSFIYIFSALQITN 65          
BLAST of mRNA_H-elongata_contig126505.1970.1 vs. uniprot
Match: A0A067C3B4_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C3B4_SAPPC)

HSP 1 Score: 53.9 bits (128), Expect = 6.150e-6
Identity = 31/112 (27.68%), Postives = 59/112 (52.68%), Query Frame = 1
Query:    7 QRESMTNMGNIQASGYIARYFGSALG-AIGGAVLYNDDTWG---WGLSISTLFWINGLVPLFLVIPLMPFLFEEPKPKEEGVLRRHVNELWDLVQKKAVWKPMIFVYIYNAF 330
            QRE +   G +Q+  Y  R   S +  AI G  + +    G   W   ++T++ +   +P FL++P   F+  + K         +++++W+L+QK+A+W+ M+F + YN F
Sbjct:  190 QREPIATRGRMQSLVYTTRTVSSTISTAIAGFCMNSPRFAGDFSWDFGVNTMYMLL-CIPCFLMVPTTYFVIRDTKTAAVP-FGHYLSQIWELLQKRAMWQIMLFNFFYNLF 299          
BLAST of mRNA_H-elongata_contig126505.1970.1 vs. uniprot
Match: A0A1W0A8F0_9STRA (tRNA(Ile)-lysidine synthetase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A8F0_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 8.140e-5
Identity = 33/112 (29.46%), Postives = 56/112 (50.00%), Query Frame = 1
Query:    7 QRESMTNMGNIQASGYIARYFGSALG-AIGGAVLYNDDTWG---WGLSISTLFWINGLVPLFLVIPLMPFLFEEPKPKEEGVLRRHVNELWDLVQKKAVWKPMIFVYIYNAF 330
            QRE +   G +Q+  Y  R     +  AI G  + +    G   W    +T++ I   VP   +IP+  F+  + K +E    + +  ++W LVQK+A+W+ M+F + YN F
Sbjct:  843 QREPLATRGRMQSLVYTTRTVAGVVSTAICGFCMDSPRFAGNFTWDFGANTMY-IILCVPCVTMIPVAYFVIHDTK-QEAANFKEYAKQVWQLVQKRAMWQIMLFNFFYNLF 952          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig126505.1970.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D8LI15_ECTSI1.070e-5678.57Folate/biopterin transporter n=2 Tax=Ectocarpus Ta... [more]
A0A835YTY0_9STRA1.130e-3153.91Folate/biopterin transporter n=2 Tax=Tribonema min... [more]
A0A6V1WMI5_HETAK1.800e-2243.75Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
W7TKM6_9STRA1.680e-2035.71Folate biopterin transporter n=2 Tax=Monodopsidace... [more]
A0A7S1TWA3_9STRA2.020e-1939.47Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A067BNQ4_SAPPC1.700e-833.93Uncharacterized protein n=2 Tax=Saprolegnia parasi... [more]
A0A067CA45_SAPPC4.320e-833.93Uncharacterized protein n=2 Tax=Saprolegnia parasi... [more]
A0A7S2WKC0_9STRA6.130e-837.10Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A067C3B4_SAPPC6.150e-627.68Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A1W0A8F0_9STRA8.140e-529.46tRNA(Ile)-lysidine synthetase n=1 Tax=Thraustothec... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig126505contigH-elongata_contig126505:483..842 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score183.0
Seed ortholog evalue8.1e-44
Seed eggNOG ortholog2880.D8LI15
EggNOG free text desc.BT1 family
EggNOG OGs29S8M@1,2RXD7@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size360
Cds size342
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929749.5351796-CDS-H-elongata_contig126505:482..8241622929749.5351796-CDS-H-elongata_contig126505:482..824Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig126505 483..824 -
1691679142.7363002-CDS-H-elongata_contig126505:482..8241691679142.7363002-CDS-H-elongata_contig126505:482..824Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig126505 483..824 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929749.5506933-UTR-H-elongata_contig126505:824..8421622929749.5506933-UTR-H-elongata_contig126505:824..842Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig126505 825..842 -
1691679142.747882-UTR-H-elongata_contig126505:824..8421691679142.747882-UTR-H-elongata_contig126505:824..842Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig126505 825..842 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig126505.1970.1prot_H-elongata_contig126505.1970.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig126505 483..824 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig126505.1970.1

>prot_H-elongata_contig126505.1970.1 ID=prot_H-elongata_contig126505.1970.1|Name=mRNA_H-elongata_contig126505.1970.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=114bp
MTNMGNIQASGYIARYFGSALGAIGGAVLYNDDTWGWGLSISTLFWINGL
VPLFLVIPLMPFLFEEPKPKEEGVLRRHVNELWDLVQKKAVWKPMIFVYI
YNAFMVRDRFLDI*
back to top

mRNA from alignment at H-elongata_contig126505:483..842-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig126505.1970.1 ID=mRNA_H-elongata_contig126505.1970.1|Name=mRNA_H-elongata_contig126505.1970.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=360bp|location=Sequence derived from alignment at H-elongata_contig126505:483..842- (Himanthalia elongata Himel1 dioecious)
AGGACACAGCGCGAGTCTATGACGAACATGGGCAACATCCAGGCCAGCGG CTACATCGCCCGGTACTTCGGGTCGGCGCTGGGCGCGATCGGAGGCGCCG TCCTCTACAACGATGATACGTGGGGCTGGGGACTCTCAATATCTACCCTG TTTTGGATCAACGGCTTGGTCCCTCTGTTCCTGGTGATCCCGCTTATGCC GTTTCTCTTCGAGGAGCCCAAGCCTAAGGAAGAGGGGGTCTTGAGGCGGC ACGTCAACGAGCTGTGGGATCTGGTTCAGAAGAAGGCCGTCTGGAAGCCC ATGATATTTGTGTATATTTACAACGCTTTCATGGTGAGAGATAGGTTTCT AGATATATGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig126505:483..842-

>mRNA_H-elongata_contig126505.1970.1 ID=mRNA_H-elongata_contig126505.1970.1|Name=mRNA_H-elongata_contig126505.1970.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=684bp|location=Sequence derived from alignment at H-elongata_contig126505:483..842- (Himanthalia elongata Himel1 dioecious)
ATGACGAACATGGGCAACATCCAGGCCAGCGGCTACATCGCCCGGTACTT
CGGGTCGGCGCTGGGCGCGATCGGAGGCGCCGTCCTCTACAACGATGATA
CGTGGGGCTGGGGACTCTCAATATCTACCCTGTTTTGGATCAACGGCTTG
GTCCCTCTGTTCCTGGTGATCCCGCTTATGCCGTTTCTCTTCGAGGAGCC
CAAGCCTAAGGAAGAGGGGGTCTTGAGGCGGCACGTCAACGAGCTGTGGG
ATCTGGTTCAGAAGAAGGCCGTCTGGAAGCCCATGATATTTGTGTATATT
TACAACGCTTTCATGGTGAGAGATAGGTTTCTAGATATATGAATGACGAA
CATGGGCAACATCCAGGCCAGCGGCTACATCGCCCGGTACTTCGGGTCGG
CGCTGGGCGCGATCGGAGGCGCCGTCCTCTACAACGATGATACGTGGGGC
TGGGGACTCTCAATATCTACCCTGTTTTGGATCAACGGCTTGGTCCCTCT
GTTCCTGGTGATCCCGCTTATGCCGTTTCTCTTCGAGGAGCCCAAGCCTA
AGGAAGAGGGGGTCTTGAGGCGGCACGTCAACGAGCTGTGGGATCTGGTT
CAGAAGAAGGCCGTCTGGAAGCCCATGATATTTGTGTATATTTACAACGC
TTTCATGGTGAGAGATAGGTTTCTAGATATATGA
back to top