mRNA_H-elongata_contig12642.1969.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig12642.1969.1
Unique NamemRNA_H-elongata_contig12642.1969.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig12642.1969.1 vs. uniprot
Match: D7FHN4_ECTSI (Acyl carrier protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHN4_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 1.580e-18
Identity = 42/53 (79.25%), Postives = 48/53 (90.57%), Query Frame = 1 
Query:   10 EILGKVQSIVVQQLAVEESKVVPTASFTQDLGADSLDTVELIMALEEGFDVSI 168
            +IL KV+ IVV QLAV+E++VVP ASFTQDLGADSLDTVELIMALEEGFD+ I
Sbjct:   58 DILNKVRGIVVSQLAVDETQVVPAASFTQDLGADSLDTVELIMALEEGFDIEI 110
[Close]
BLAST of mRNA_H-elongata_contig12642.1969.1 vs. uniprot
Match: B4WHJ8_SYNS7 (Acyl carrier protein n=2 Tax=Cyanobacteria TaxID=1117 RepID=B4WHJ8_SYNS7)

HSP 1 Score: 75.1 bits (183), Expect = 1.520e-16
Identity = 39/54 (72.22%), Postives = 45/54 (83.33%), Query Frame = 1 
Query:    7 EEILGKVQSIVVQQLAVEESKVVPTASFTQDLGADSLDTVELIMALEEGFDVSI 168
            EEILGKVQ IV +QL V+E++V P ASF  DLGADSLDTVEL+MALEE FD+ I
Sbjct:    3 EEILGKVQKIVSEQLGVDEAEVKPEASFANDLGADSLDTVELVMALEEEFDIEI 56
[Close]
BLAST of mRNA_H-elongata_contig12642.1969.1 vs. uniprot
Match: A0A251WCW4_9CYAN (Acyl carrier protein n=3 Tax=unclassified Alkalinema TaxID=2635015 RepID=A0A251WCW4_9CYAN)

HSP 1 Score: 74.3 bits (181), Expect = 3.150e-16
Identity = 40/56 (71.43%), Postives = 45/56 (80.36%), Query Frame = 1 
Query:    1 TKEEILGKVQSIVVQQLAVEESKVVPTASFTQDLGADSLDTVELIMALEEGFDVSI 168
            T+ EI  KV+SIVV QL+VE  KVVP ASF  DLGADSLDTVEL+MALEE FD+ I
Sbjct:    2 TETEIFEKVKSIVVDQLSVEADKVVPEASFQNDLGADSLDTVELVMALEEEFDIEI 57
[Close]
BLAST of mRNA_H-elongata_contig12642.1969.1 vs. uniprot
Match: UPI000560A32D (acyl carrier protein n=1 Tax=Myxosarcina sp. GI1 TaxID=1541065 RepID=UPI000560A32D)

HSP 1 Score: 73.9 bits (180), Expect = 4.710e-16
Identity = 37/54 (68.52%), Postives = 44/54 (81.48%), Query Frame = 1 
Query:    7 EEILGKVQSIVVQQLAVEESKVVPTASFTQDLGADSLDTVELIMALEEGFDVSI 168
            +E+  KVQ IVV+QL VEE++V P ASF  DLGADSLDTVEL+MALEE FD+ I
Sbjct:    3 QEVFAKVQKIVVEQLEVEENRVTPEASFANDLGADSLDTVELVMALEEEFDIEI 56
[Close]
BLAST of mRNA_H-elongata_contig12642.1969.1 vs. uniprot
Match: UPI0019D8FE6C (Acyl carrier protein n=2 Tax=Cyanobacteria TaxID=1117 RepID=UPI0019D8FE6C)

HSP 1 Score: 73.2 bits (178), Expect = 9.260e-16
Identity = 38/56 (67.86%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:    1 TKEEILGKVQSIVVQQLAVEESKVVPTASFTQDLGADSLDTVELIMALEEGFDVSI 168
            ++E+IL KVQ IV +QL+V+ES+V P ASF  DLGADSLDTVEL+MALEE FD+ I
Sbjct:    2 SQEDILKKVQKIVSEQLSVDESEVKPEASFANDLGADSLDTVELVMALEEEFDIEI 57
[Close]
BLAST of mRNA_H-elongata_contig12642.1969.1 vs. uniprot
Match: UPI0016890674 (acyl carrier protein n=1 Tax=Oscillatoria sp. FACHB-1407 TaxID=2692847 RepID=UPI0016890674)

HSP 1 Score: 73.2 bits (178), Expect = 9.260e-16
Identity = 39/56 (69.64%), Postives = 45/56 (80.36%), Query Frame = 1 
Query:    1 TKEEILGKVQSIVVQQLAVEESKVVPTASFTQDLGADSLDTVELIMALEEGFDVSI 168
            ++EEIL KVQ IV +QL VE S+V P ASF  DLGADSLDTVEL+MALEE FD+ I
Sbjct:    2 SREEILKKVQEIVSEQLGVETSEVKPEASFANDLGADSLDTVELVMALEEEFDIEI 57
[Close]
BLAST of mRNA_H-elongata_contig12642.1969.1 vs. uniprot
Match: UPI001680A5E1 (acyl carrier protein n=1 Tax=Leptolyngbya sp. FACHB-36 TaxID=2692808 RepID=UPI001680A5E1)

HSP 1 Score: 73.2 bits (178), Expect = 9.750e-16
Identity = 38/53 (71.70%), Postives = 44/53 (83.02%), Query Frame = 1 
Query:   10 EILGKVQSIVVQQLAVEESKVVPTASFTQDLGADSLDTVELIMALEEGFDVSI 168
            EI  KVQ+IV +QL VE S+VVP+ASF  DLGADSLDTVEL+MALEE FD+ I
Sbjct:    5 EIFEKVQNIVAEQLGVEASEVVPSASFANDLGADSLDTVELVMALEEEFDIEI 57
[Close]
BLAST of mRNA_H-elongata_contig12642.1969.1 vs. uniprot
Match: ACP_CYAM1 (Acyl carrier protein n=3 Tax=Cyanidiaceae TaxID=265316 RepID=ACP_CYAM1)

HSP 1 Score: 72.8 bits (177), Expect = 1.710e-15
Identity = 37/56 (66.07%), Postives = 46/56 (82.14%), Query Frame = 1 
Query:    1 TKEEILGKVQSIVVQQLAVEESKVVPTASFTQDLGADSLDTVELIMALEEGFDVSI 168
            T+++IL KVQSIV +QL VE S++ P ASFT DLGADSLD VEL+MA+EE FD+ I
Sbjct:    2 TEQQILDKVQSIVSEQLGVERSQISPNASFTHDLGADSLDNVELVMAMEEEFDLEI 57
[Close]
BLAST of mRNA_H-elongata_contig12642.1969.1 vs. uniprot
Match: UPI0019EC7E51 (Acyl carrier protein n=1 Tax=Gloeomargaritaceae cyanobacterium C42_A2020_066 TaxID=2747801 RepID=UPI0019EC7E51)

HSP 1 Score: 72.4 bits (176), Expect = 1.920e-15
Identity = 39/55 (70.91%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:    4 KEEILGKVQSIVVQQLAVEESKVVPTASFTQDLGADSLDTVELIMALEEGFDVSI 168
            K  IL KVQ IVV +L+VE  KVVP ASF  DLGADSLDTVEL+MALEE FD+ I
Sbjct:    3 KTAILAKVQEIVVDKLSVEADKVVPDASFQNDLGADSLDTVELVMALEEEFDIEI 57
[Close]
BLAST of mRNA_H-elongata_contig12642.1969.1 vs. uniprot
Match: A0A8J6QYH8_9CYAN (Acyl carrier protein n=3 Tax=unclassified Trichocoleus TaxID=2628910 RepID=A0A8J6QYH8_9CYAN)

HSP 1 Score: 72.0 bits (175), Expect = 2.650e-15
Identity = 38/55 (69.09%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:    4 KEEILGKVQSIVVQQLAVEESKVVPTASFTQDLGADSLDTVELIMALEEGFDVSI 168
            +EEI  KVQ IV +QL VE S+V P ASF  DLGADSLDTVEL+MALEE FD+ I
Sbjct:    3 QEEIFAKVQKIVSEQLGVEASEVKPAASFANDLGADSLDTVELVMALEEEFDIEI 57
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12642.1969.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHN4_ECTSI1.580e-1879.25Acyl carrier protein n=2 Tax=Ectocarpus TaxID=2879... [more]
B4WHJ8_SYNS71.520e-1672.22Acyl carrier protein n=2 Tax=Cyanobacteria TaxID=1... [more]
A0A251WCW4_9CYAN3.150e-1671.43Acyl carrier protein n=3 Tax=unclassified Alkaline... [more]
UPI000560A32D4.710e-1668.52acyl carrier protein n=1 Tax=Myxosarcina sp. GI1 T... [more]
UPI0019D8FE6C9.260e-1667.86Acyl carrier protein n=2 Tax=Cyanobacteria TaxID=1... [more]
UPI00168906749.260e-1669.64acyl carrier protein n=1 Tax=Oscillatoria sp. FACH... [more]
UPI001680A5E19.750e-1671.70acyl carrier protein n=1 Tax=Leptolyngbya sp. FACH... [more]
ACP_CYAM11.710e-1566.07Acyl carrier protein n=3 Tax=Cyanidiaceae TaxID=26... [more]
UPI0019EC7E511.920e-1570.91Acyl carrier protein n=1 Tax=Gloeomargaritaceae cy... [more]
A0A8J6QYH8_9CYAN2.650e-1569.09Acyl carrier protein n=3 Tax=unclassified Trichoco... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12642contigH-elongata_contig12642:6913..7080 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score75.1
Seed ortholog evalue1.2e-11
Seed eggNOG ortholog91464.S7335_3839
Preferred nameacpP
KEGG koko:K02078
GOsGO:0000035,GO:0000036,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016053,GO:0019637,GO:0019752,GO:0019842,GO:0031177,GO:0032787,GO:0033218,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0044620,GO:0046394,GO:0046467,GO:0046493,GO:0048037,GO:0051192,GO:0071704,GO:0072330,GO:0072341,GO:0090407,GO:0140104,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509
EggNOG free text desc.Carrier of the growing fatty acid chain in fatty acid biosynthesis
EggNOG OGs1G9GC@1117,1H10U@1129,COG0236@1,COG0236@2
COG Functional cat.IQ
Best tax levelSynechococcus
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size168
Cds size168
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929749.4850068-CDS-H-elongata_contig12642:6912..70801622929749.4850068-CDS-H-elongata_contig12642:6912..7080Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12642 6913..7080 -
1691679142.7227366-CDS-H-elongata_contig12642:6912..70801691679142.7227366-CDS-H-elongata_contig12642:6912..7080Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12642 6913..7080 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12642.1969.1prot_H-elongata_contig12642.1969.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig12642 6913..7080 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig12642.1969.1

>prot_H-elongata_contig12642.1969.1 ID=prot_H-elongata_contig12642.1969.1|Name=mRNA_H-elongata_contig12642.1969.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=56bp
TKEEILGKVQSIVVQQLAVEESKVVPTASFTQDLGADSLDTVELIMALEE
GFDVSI
back to top

mRNA from alignment at H-elongata_contig12642:6913..7080-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig12642.1969.1 ID=mRNA_H-elongata_contig12642.1969.1|Name=mRNA_H-elongata_contig12642.1969.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=168bp|location=Sequence derived from alignment at H-elongata_contig12642:6913..7080- (Himanthalia elongata Himel1 dioecious)
ACCAAGGAAGAGATACTAGGTAAGGTGCAGTCGATCGTGGTGCAGCAGTT
GGCTGTGGAGGAGAGCAAGGTGGTGCCTACGGCGTCATTCACTCAGGACC
TTGGAGCCGACTCCCTGGACACCGTGGAGCTAATCATGGCCCTAGAGGAA
GGCTTCGATGTGAGCATA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig12642:6913..7080-

>mRNA_H-elongata_contig12642.1969.1 ID=mRNA_H-elongata_contig12642.1969.1|Name=mRNA_H-elongata_contig12642.1969.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=336bp|location=Sequence derived from alignment at H-elongata_contig12642:6913..7080- (Himanthalia elongata Himel1 dioecious)
ACCAAGGAAGAGATACTAGGTAAGGTGCAGTCGATCGTGGTGCAGCAGTT
GGCTGTGGAGGAGAGCAAGGTGGTGCCTACGGCGTCATTCACTCAGGACC
TTGGAGCCGACTCCCTGGACACCGTGGAGCTAATCATGGCCCTAGAGGAA
GGCTTCGATGTGAGCATAACCAAGGAAGAGATACTAGGTAAGGTGCAGTC
GATCGTGGTGCAGCAGTTGGCTGTGGAGGAGAGCAAGGTGGTGCCTACGG
CGTCATTCACTCAGGACCTTGGAGCCGACTCCCTGGACACCGTGGAGCTA
ATCATGGCCCTAGAGGAAGGCTTCGATGTGAGCATA
back to top