mRNA_H-elongata_contig126407.1967.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig126407.1967.1 vs. uniprot
Match: A0A6H5L0H9_9PHAE (Na_H_Exchanger domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0H9_9PHAE) HSP 1 Score: 202 bits (515), Expect = 1.120e-58 Identity = 105/121 (86.78%), Postives = 111/121 (91.74%), Query Frame = 1
Query: 1 KVLMLAGPGVMVATIMMACFSKYVFPFGWDWNTSLFFGAMTSATDPVAVVALMKELGVSERLAVLIEGESLLNDGTSIVVFSVFFNAATGVGSTSVSTVVTQFVRLGLGGPLVGLFTAMIG 363
+VL+LAGPGVM ATIMMA FSKYVFP+ WDWNT LFFGAMTSATDPVAVVALMKELGVSERLAVLIEGESLLNDGTSIVVFSVFF+A+TG+GSTSV VV QFVRLGLGGP VG FT MIG
Sbjct: 144 QVLVLAGPGVMAATIMMAVFSKYVFPYDWDWNTCLFFGAMTSATDPVAVVALMKELGVSERLAVLIEGESLLNDGTSIVVFSVFFDASTGIGSTSVGHVVAQFVRLGLGGPAVGFFTGMIG 264
BLAST of mRNA_H-elongata_contig126407.1967.1 vs. uniprot
Match: D7G372_ECTSI (Sodium/hydrogen exchanger family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G372_ECTSI) HSP 1 Score: 203 bits (517), Expect = 2.650e-58 Identity = 105/121 (86.78%), Postives = 112/121 (92.56%), Query Frame = 1
Query: 1 KVLMLAGPGVMVATIMMACFSKYVFPFGWDWNTSLFFGAMTSATDPVAVVALMKELGVSERLAVLIEGESLLNDGTSIVVFSVFFNAATGVGSTSVSTVVTQFVRLGLGGPLVGLFTAMIG 363
+VL+LAGPGV+ ATIMMA FSKYVFP+ WDWNT LFFGAMTSATDPVAVVALMKELGVSERLAVLIEGESLLNDGTSIVVFSVFF+A+TG+GSTSV VVTQFVRLGLGGP VG FT MIG
Sbjct: 77 QVLVLAGPGVLAATIMMAVFSKYVFPYDWDWNTCLFFGAMTSATDPVAVVALMKELGVSERLAVLIEGESLLNDGTSIVVFSVFFDASTGIGSTSVGHVVTQFVRLGLGGPAVGFFTGMIG 197
BLAST of mRNA_H-elongata_contig126407.1967.1 vs. uniprot
Match: D8LKR2_ECTSI (Sodium/hydrogen exchanger family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKR2_ECTSI) HSP 1 Score: 144 bits (363), Expect = 9.410e-38 Identity = 76/121 (62.81%), Postives = 90/121 (74.38%), Query Frame = 1
Query: 1 KVLMLAGPGVMVATIMMACFSKYVFPFGWDWNTSLFFGAMTSATDPVAVVALMKELGVSERLAVLIEGESLLNDGTSIVVFSVFFNAATGVGSTSVSTVVTQFVRLGLGGPLVGLFTAMIG 363
+V+ LAGPGV +ATI+ A KYVFP+GWDWN SL G + SATDPVAVVAL+K+LGVSERL VLIEGESLLND T IVVF VF +A GV +S + V+ VR+ GGP+VGL M G
Sbjct: 40 QVVTLAGPGVAIATIITASIVKYVFPYGWDWNLSLMLGGILSATDPVAVVALLKDLGVSERLNVLIEGESLLNDATGIVVFIVFRDAFVGVADSSPAQVLVTAVRMSFGGPMVGLALGMFG 160
BLAST of mRNA_H-elongata_contig126407.1967.1 vs. uniprot
Match: A0A7S2SQN5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQN5_9STRA) HSP 1 Score: 124 bits (310), Expect = 1.160e-31 Identity = 66/119 (55.46%), Postives = 84/119 (70.59%), Query Frame = 1
Query: 1 KVLMLAGPGVMVATIMMACFSKYVFPFGWDWNTSLFFGAMTSATDPVAVVALMKELGVSERLAVLIEGESLLNDGTSIVVFSVFFNAA----TGVGSTSVSTVVTQFVRLGLGGPLVGL 345
+VL LAGPGV+V+T + A F KYVF +GW W L FG+M SATDPVAVVAL K+LGV++RL LIEGE L+NDG++IV+F++ A T S VVT ++L LGGP+VGL
Sbjct: 163 QVLFLAGPGVIVSTFLTALFVKYVFNYGWSWTLCLLFGSMMSATDPVAVVALFKDLGVNQRLGTLIEGEGLMNDGSAIVIFNICLAAIEKRRTNNAGLSAGDVVTTALQLSLGGPVVGL 281
BLAST of mRNA_H-elongata_contig126407.1967.1 vs. uniprot
Match: A0A5J4XFT3_9CHLO (Salt overly sensitive 1 n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XFT3_9CHLO) HSP 1 Score: 119 bits (298), Expect = 2.400e-31 Identity = 62/112 (55.36%), Postives = 81/112 (72.32%), Query Frame = 1
Query: 1 KVLMLAGPGVMVATIMMACFSKYVFPFGWDWNTSLFFGAMTSATDPVAVVALMKELGVSERLAVLIEGESLLNDGTSIVVFSVFFNAATGVGSTSVSTVVTQFVRLGLGGPL 336
+VL+LAGPGV++ T + A F KYVFP+ W W SL FGAM SATDPVAV+AL++E+G + L +IEGESL NDG++ V+F +F NA G T ST+ +Q +L LGGPL
Sbjct: 74 QVLLLAGPGVVIGTALTAVFVKYVFPYNWTWLESLLFGAMLSATDPVAVIALLQEVGAEKELRTVIEGESLFNDGSAYVLFLLFHNALQGQELTVKSTI-SQLCQLSLGGPL 184
BLAST of mRNA_H-elongata_contig126407.1967.1 vs. uniprot
Match: A0A6H5LPB6_9PHAE (Na_H_Exchanger domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LPB6_9PHAE) HSP 1 Score: 125 bits (313), Expect = 4.410e-31 Identity = 65/121 (53.72%), Postives = 86/121 (71.07%), Query Frame = 1
Query: 1 KVLMLAGPGVMVATIMMACFSKYVFPFGWDWNTSLFFGAMTSATDPVAVVALMKELGVSERLAVLIEGESLLNDGTSIVVFSVFFNAATGVGSTSVSTVVTQFVRLGLGGPLVGLFTAMIG 363
+++ LAGPGV++ + A F K+V P+ WDWN S+ FG+M +ATDPVAVVAL++ELGVSE+L LIEGESLLNDG++IVVF VF A G S + V+ RL LGGP +G ++G
Sbjct: 128 QIIFLAGPGVILGAGLTAVFMKFVLPYDWDWNLSMVFGSMVAATDPVAVVALLEELGVSEKLGTLIEGESLLNDGSAIVVFEVFLEAVEG-HSRNWHEVIEFGARLALGGPAIGAVIGIMG 247
BLAST of mRNA_H-elongata_contig126407.1967.1 vs. uniprot
Match: A0A7S3JZM7_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JZM7_9STRA) HSP 1 Score: 125 bits (313), Expect = 8.100e-31 Identity = 70/125 (56.00%), Postives = 85/125 (68.00%), Query Frame = 1
Query: 1 KVLMLAGPGVMVATIMMACFSKYVF-PFGWDWNTSLFFGAMTSATDPVAVVALMKELGVSERLAVLIEGESLLNDGTSIVVFSVFFNAAT----GVGSTSVSTVVTQFVRLGLGGPLVGLFTAMI 360
++L LAGPGV+VAT++ A F+KYVF + WDW T L FGA+ SATDPVAVVAL+KELGVSERL LIEGESLLNDGT+IV+F VFF A ++ RL GP+VG+ I
Sbjct: 98 QILSLAGPGVLVATVLTAIFTKYVFVAYEWDWPTCLMFGAILSATDPVAVVALLKELGVSERLGTLIEGESLLNDGTAIVIFDVFFEALEKRPCSPSMPQALHIIELIFRLAALGPIVGVIIGFI 222
BLAST of mRNA_H-elongata_contig126407.1967.1 vs. uniprot
Match: A0A7S1UK40_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UK40_9STRA) HSP 1 Score: 123 bits (309), Expect = 2.770e-30 Identity = 66/115 (57.39%), Postives = 86/115 (74.78%), Query Frame = 1
Query: 1 KVLMLAGPGVMVATIMMACFSKYVFPFGWDWNTSLFFGAMTSATDPVAVVALMKELGVSERLAVLIEGESLLNDGTSIVVFSVFFNAATGVGSTSVSTVVTQFVRLGLGGPLVGL 345
+VL+LA PGV++AT++ A V P+ + +N S+ FGAM SATDPVAVVALMKELGVSERLA L+EGESL NDGTSIV+F VF +A TG + + ++ F+RL LGG + G+
Sbjct: 122 QVLVLAVPGVIMATLLTALIVWRVLPYNFPFNASMMFGAMLSATDPVAVVALMKELGVSERLATLMEGESLFNDGTSIVLFEVFRDALTGAANRNAGELIAFFLRLALGGAVAGI 236
BLAST of mRNA_H-elongata_contig126407.1967.1 vs. uniprot
Match: UPI001458FB68 (sodium/hydrogen exchanger 10-like isoform X4 n=2 Tax=Pecten maximus TaxID=6579 RepID=UPI001458FB68) HSP 1 Score: 122 bits (306), Expect = 7.070e-30 Identity = 59/120 (49.17%), Postives = 86/120 (71.67%), Query Frame = 1
Query: 1 KVLMLAGPGVMVATIMMACFSKYVFPFGWDWNTSLFFGAMTSATDPVAVVALMKELGVSERLAVLIEGESLLNDGTSIVVFSVFFNAATGVGSTSVSTVVTQFVRLGLGGPLVGLFTAMI 360
+V++LA PG+ +A++ ++Y+F + WDWNT + FGA+ SATDPVAVVAL+++LG S++LA++IEGESLLNDG +IV F +F +T G +V +FVR+ +GGPL G A I
Sbjct: 120 QVVLLAIPGLALASLFTCILARYLFTYNWDWNTGMMFGAILSATDPVAVVALLRDLGASKKLAMVIEGESLLNDGAAIVFFQIFLKLSTSGGEIDGGEIVWEFVRVAVGGPLWGYLMAKI 239
BLAST of mRNA_H-elongata_contig126407.1967.1 vs. uniprot
Match: UPI0014581CAB (sodium/hydrogen exchanger 10-like isoform X1 n=3 Tax=Pecten maximus TaxID=6579 RepID=UPI0014581CAB) HSP 1 Score: 122 bits (306), Expect = 7.180e-30 Identity = 59/120 (49.17%), Postives = 86/120 (71.67%), Query Frame = 1
Query: 1 KVLMLAGPGVMVATIMMACFSKYVFPFGWDWNTSLFFGAMTSATDPVAVVALMKELGVSERLAVLIEGESLLNDGTSIVVFSVFFNAATGVGSTSVSTVVTQFVRLGLGGPLVGLFTAMI 360
+V++LA PG+ +A++ ++Y+F + WDWNT + FGA+ SATDPVAVVAL+++LG S++LA++IEGESLLNDG +IV F +F +T G +V +FVR+ +GGPL G A I
Sbjct: 120 QVVLLAIPGLALASLFTCILARYLFTYNWDWNTGMMFGAILSATDPVAVVALLRDLGASKKLAMVIEGESLLNDGAAIVFFQIFLKLSTSGGEIDGGEIVWEFVRVAVGGPLWGYLMAKI 239 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig126407.1967.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig126407.1967.1 >prot_H-elongata_contig126407.1967.1 ID=prot_H-elongata_contig126407.1967.1|Name=mRNA_H-elongata_contig126407.1967.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=119bp MLAGPGVMVATIMMACFSKYVFPFGWDWNTSLFFGAMTSATDPVAVVALMback to top mRNA from alignment at H-elongata_contig126407:444..1414+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig126407.1967.1 ID=mRNA_H-elongata_contig126407.1967.1|Name=mRNA_H-elongata_contig126407.1967.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=971bp|location=Sequence derived from alignment at H-elongata_contig126407:444..1414+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig126407:444..1414+ >mRNA_H-elongata_contig126407.1967.1 ID=mRNA_H-elongata_contig126407.1967.1|Name=mRNA_H-elongata_contig126407.1967.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=714bp|location=Sequence derived from alignment at H-elongata_contig126407:444..1414+ (Himanthalia elongata Himel1 dioecious)back to top |