mRNA_H-elongata_contig12637.1964.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig12637.1964.1
Unique NamemRNA_H-elongata_contig12637.1964.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig12637.1964.1 vs. uniprot
Match: A0A6H5LBB4_9PHAE (TsaA-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LBB4_9PHAE)

HSP 1 Score: 603 bits (1554), Expect = 2.890e-204
Identity = 322/529 (60.87%), Postives = 389/529 (73.53%), Query Frame = 1 
Query:  466 LLLLPSAAFIGAGRFLPHSDCQEHLVTLGQARAATTGLNELRVLYVSCSWSNHGRGE-RDWDARDFKTTRDFLQRNPNLVFVYVGRSCMVSDSDNS--LRASQLRHVPCALMRADCMLILPPHSGNLAWEADSPMIKCQHHSDLRSHALGSWARMELALAAMGQAKVYVAFRAVPYPESVFELEPGKSNVRDIVKKAVDTLKNDAGPSGAGEANAMTGNVSFEIDVTAKVGAQGNGVDNKLMASTAAVME-ACENWLSADLNPLKALEEARVVVTVAEKHGNVKVLESVRRMHPISPSDKLIVGVRAALGEEHIKGSGELALCLLLFSVLCSRPKERGTYTDAFVDAAAKMEITYRPIALIRSPYRERFGTPRQPQVTASVLQGRAQEGQIIFLKGHGYEEALQDLDGFDMIWVLSHMHLNRGWNRKVRPPRLPEERKGLFSTRSPHRPNPMALSSLRVKRVDVSRGVIYVHGLDLLDGTPVLDIKPYIGYCDAFPDARIGWLEELGSNHEGQGDFLSKFSVGAALVHT 2040
            LLLLP   FI AGRF+P+++C++ LV+LGQARAAT G+ +LRVLYVSCSW++ G GE   W  +DF+TTR +LQRNP+L FVYVGRSC+V  S ++  +R++QLRHV  AL+R+D +L+LP  + +   E  S     ++ +D    A GS +RM LA+AA+GQAKV+VAFRA  YPESV ELE GKSNVR   K+AVD L+  A                                  +   STAAV+E ACENWL ADLNPL ALE+AR VV  A++  + + LE+++ M P +PS       RAALG+E I    ELAL +LLF+VLCS+ KER TYT+ FV+   KMEI+Y P+A++RSPYRERFGTPRQPQVTASVL G AQEGQI+FL+G GYEEALQDL GFDMIWVL+HMHLN+GWN KVRPPRLPEERKGLFSTRSPHRPN +ALSSLRV RVD + GVIYVHGLDLLDGTPVLDIKPYIGYCDAFP+ + GWL+ LGS+HE QGDFL KFSVGA LVHT
Sbjct:  123 LLLLPRECFIVAGRFVPYAECRDQLVSLGQARAATAGVEQLRVLYVSCSWASAGGGEGTGWAVQDFETTRAYLQRNPDLSFVYVGRSCVVGSSSSTGHVRSTQLRHVAPALLRSDAVLVLPRLAKSPGGEEGSGSTGTRY-TDFECSARGSRSRMVLAIAAVGQAKVFVAFRAGSYPESVVELELGKSNVRATAKQAVDALRAAAA--------------------------------KRPQKSTAAVVEEACENWLGADLNPLSALEQARAVVEEAQRSDDGEALENIQSMRP-APS--FAANARAALGDEFIGEERELALSMLLFAVLCSQRKERATYTENFVEDVGKMEISYCPVAVVRSPYRERFGTPRQPQVTASVLHGGAQEGQIVFLRGRGYEEALQDLSGFDMIWVLTHMHLNKGWNPKVRPPRLPEERKGLFSTRSPHRPNAIALSSLRVGRVDAANGVIYVHGLDLLDGTPVLDIKPYIGYCDAFPNVKAGWLDALGSDHERQGDFLPKFSVGATLVHT 615
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BLAST of mRNA_H-elongata_contig12637.1964.1 vs. uniprot
Match: A0A835YNQ9_9STRA (TsaA-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNQ9_9STRA)

HSP 1 Score: 218 bits (556), Expect = 6.210e-63
Identity = 98/154 (63.64%), Postives = 124/154 (80.52%), Query Frame = 1 
Query: 1525 IALIRSPYRERFGTPRQPQVTASVLQGRAQEGQIIFLKGHGYEEALQDLDGFDMIWVLSHMHLNRGWNRKVRPPRLPEERKGLFSTRSPHRPNPMALSSLRVKRVDVSRGVIYVHGLDLLDGTPVLDIKPYIGYCDAFPDARIGWLEELGSNHE 1986
            I ++RSPY+ERFGTPRQ  VTA VL+G+AQ GQ++F +G  +E AL+DLDGFD +WV+S+MHLN+GWN KV+PPR P  ++GLFSTRSPHRPN +ALS++++  VD     + V GLDLLDGTP+LDIKPY+ YCDAFP A+ GWLEEL S  E
Sbjct:    6 IGVVRSPYKERFGTPRQANVTAGVLEGKAQHGQLVFSRGRNFEVALEDLDGFDYVWVISYMHLNQGWNPKVKPPRGPRVKRGLFSTRSPHRPNSIALSAVKIVSVDPKGLTVTVEGLDLLDGTPILDIKPYVPYCDAFPGAKTGWLEELSSIDE 159
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BLAST of mRNA_H-elongata_contig12637.1964.1 vs. uniprot
Match: A0A7S3XP01_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XP01_HETAK)

HSP 1 Score: 197 bits (502), Expect = 3.100e-54
Identity = 95/175 (54.29%), Postives = 127/175 (72.57%), Query Frame = 1 
Query: 1441 LCSRPKERGTYTDAFVDAAAKMEITYRPIALIRSPYRERFGTPRQPQVTASVLQGRAQEGQIIFLKGHGYEEALQDLDGFDMIWVLSHMHLNRGWNRKVRPPRLPEERK-GLFSTRSPHRPNPMALSSLRVKRVDVSRGVIYVHGLDLLDGTPVLDIKPYIGYCDAFPDARIGWL 1962
            L ++P++   YT+ F    +   ++   IA++RSPY+ERFGTPRQP VT   L G AQ G+I+F K   +E ALQDL+GF+  W++++ HLN+GWN KV+PPR   + K GLF+TRSPHRPNP+ LS+ ++  VD  +GV+ V GLDLLDGTPVLD+KPY+ Y DAFP AR GWL
Sbjct:   52 LTNKPQQ--FYTEQFTTPES---VSMETIAVVRSPYKERFGTPRQPVVTKGTLGGSAQIGEIVFKKNRNFEIALQDLEGFEYCWLITYFHLNKGWNPKVKPPRGKHDAKLGLFATRSPHRPNPIGLSACKIHSVDHRQGVVRVAGLDLLDGTPVLDLKPYVPYADAFPHARAGWL 221
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BLAST of mRNA_H-elongata_contig12637.1964.1 vs. uniprot
Match: A0A7S1WEL1_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1WEL1_ALECA)

HSP 1 Score: 194 bits (492), Expect = 2.990e-53
Identity = 91/183 (49.73%), Postives = 129/183 (70.49%), Query Frame = 1 
Query: 1447 SRPKERGTYTDAFVDAAAKMEITYRPIALIRSPYRERFGTPRQPQVTASVLQGRAQEGQIIFLKGHGYEEAL--QDLDGFDMIWVLSHMHLNRGWNRKVRPPRLPEERKGLFSTRSPHRPNPMALSSLRVKRVDVSRGVIYVHGLDLLDGTPVLDIKPYIGYCDAFPDARIGWLEELGSNHEG 1989
            SRP +   +TDAF      +++T R I ++RSPY+ERFG PRQP ++  VL G AQEG I FL     + AL  +DL+GF+ IW++ ++HLN GW+ +V PPR   +++GLF+TRSPHRPN ++LS+ ++  VD     + V GLDLLDGTPVLD+KPY+ YCD++P AR GW++E+   H+G
Sbjct:   25 SRPPQ--VHTDAF---PTPLQVTLRTIGVVRSPYKERFGCPRQPPISKGVLGGSAQEGTIQFLDNPDGDIALALKDLEGFERIWIVGYLHLNEGWSPRVTPPRGARQKRGLFATRSPHRPNHISLSACQLLSVDAKAKTLTVRGLDLLDGTPVLDVKPYVPYCDSYPSARAGWIDEVEGEHDG 202
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BLAST of mRNA_H-elongata_contig12637.1964.1 vs. uniprot
Match: A0A7V8E2B3_9BACT (TsaA-like domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7V8E2B3_9BACT)

HSP 1 Score: 191 bits (486), Expect = 6.400e-53
Identity = 91/149 (61.07%), Postives = 115/149 (77.18%), Query Frame = 1 
Query: 1525 IALIRSPYRERFGTPRQPQVTASVLQGRAQEGQIIFLKGHGYEEALQDLDGFDMIWVLSHMHLNRGWNRKVRPPRLPEERKGLFSTRSPHRPNPMALSSLRVKRVDVSRGVIYVHGLDLLDGTPVLDIKPYIGYCDAFPDARIGWLEEL 1971
            I  +RSPY+ERFGTPRQP VT   L+ RA E  I  L G  +E+AL+DL+GFD IWVL+ +HLN GW+ +V PPR PE ++GLF+TR+PHRPNP++LS+LR+  + +   V+ V G+DLLDGTPVLDIKPYI Y DAFPDAR GWL+ L
Sbjct:   25 IGHVRSPYKERFGTPRQPPVTEQTLEDRALEASIELLPGRNFEQALKDLEGFDYIWVLAWLHLNEGWSPQVIPPRGPEVKRGLFATRAPHRPNPISLSALRL--LGIEGRVLKVRGIDLLDGTPVLDIKPYIPYSDAFPDARTGWLKGL 171
[Close]
BLAST of mRNA_H-elongata_contig12637.1964.1 vs. uniprot
Match: A0A6N6JQK0_9BACT (tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO n=3 Tax=Bacteria TaxID=2 RepID=A0A6N6JQK0_9BACT)

HSP 1 Score: 189 bits (481), Expect = 3.210e-52
Identity = 92/162 (56.79%), Postives = 121/162 (74.69%), Query Frame = 1 
Query: 1492 AAAKMEITYRPIAL--IRSPYRERFGTPRQPQVTASVLQGRAQEGQIIFLKGHGYEEALQDLDGFDMIWVLSHMHLNRGWNRKVRPPRLPEERKGLFSTRSPHRPNPMALSSLRVKRVDVSRGVIYVHGLDLLDGTPVLDIKPYIGYCDAFPDARIGWLEEL 1971
            A  K   T+  +A+  +RSPY+ERFGTPRQP VTA  L+ RA + +I  L    +E+ALQDL+GF+ IWVL+ +HLN GWN +V PPR P+ ++GLF+TR+PHRPNP+ LS+LR+ RV+    V++V G+DLLDGTPVLD+KPY+ Y DAF  AR GWLE L
Sbjct:   12 AGQKAPATFTCVAIGHVRSPYKERFGTPRQPVVTAQTLEDRALDARIELLPAMNFEQALQDLEGFEYIWVLAWLHLNSGWNPQVMPPRGPKVKRGLFATRAPHRPNPIGLSALRLIRVEGR--VLHVRGIDLLDGTPVLDVKPYVPYSDAFAAARAGWLEGL 171
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BLAST of mRNA_H-elongata_contig12637.1964.1 vs. uniprot
Match: A0A0G4F040_VITBC (TsaA-like domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4F040_VITBC)

HSP 1 Score: 192 bits (489), Expect = 3.410e-52
Identity = 90/162 (55.56%), Postives = 118/162 (72.84%), Query Frame = 1 
Query: 1489 DAAAKMEITYRPIALIRSPYRERFGTPRQPQVTASVLQGRAQEGQIIFLKGHGYEEALQDLDGFDMIWVLSHMHLNRGWNRKVR--PPRLPEERKGLFSTRSPHRPNPMALSSLRVKRVDVSRGVIYVHGLDLLDGTPVLDIKPYIGYCDAFPDARIGWLEE 1968
            DA     I   PI ++RSPY+ERFGTPRQP VT   L G  Q   +  L+GHGYE  L+D++GF+ +W++++MHLN+GW  KVR  P +LP  R GLF+TR+PHRPN +ALS++ V  VDV  G +++ GLDLLDGTPVLDIKPY+ Y DAFPD+  GWL++
Sbjct:   80 DADVPEAIEMHPIGVVRSPYKERFGTPRQPVVTEGTLGGVKQNATVQLLRGHGYEACLEDVEGFERVWLITYMHLNQGWRSKVRVYPRKLPR-RLGLFATRAPHRPNQLALSAVEVVGVDVDAGQLHILGLDLLDGTPVLDIKPYVPYADAFPDSAAGWLDQ 240
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BLAST of mRNA_H-elongata_contig12637.1964.1 vs. uniprot
Match: UPI001AD54E4C (tRNA (Adenine(37)-N6)-methyltransferase n=2 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=UPI001AD54E4C)

HSP 1 Score: 185 bits (469), Expect = 1.520e-50
Identity = 91/163 (55.83%), Postives = 118/163 (72.39%), Query Frame = 1 
Query: 1495 AAKME-ITYRPIALIRSPYRERFGTPRQPQVTASVLQGRAQEGQIIFLKGHGYEEALQDLDGFDMIWVLSHMHLNRGWNRKVRPPRLPEERKGLFSTRSPHRPNPMALSSLRVKRVDVSRGVIYVHGLDLLDGTPVLDIKPYIGYCDAFPDARIGWLEELGSN 1980
            AA++E +    I  + SPY+ERFGTPRQP VT   L  RAQE  I  + G  +E+AL+DL+GF+ IWVL+ +HLN GWN +V PPR P+ ++GLF+TR+PHRPN + LS+L++  V +    + V G+DLLDGTPVLDIKPYI Y DAFP AR GWLE L S+
Sbjct:   14 AARVERVECEIIGYVHSPYKERFGTPRQPPVTEQTLDDRAQEAMIELVPGRNFEQALKDLEGFEYIWVLAWLHLNEGWNPQVIPPRGPKVKRGLFATRAPHRPNSIGLSALKL--VGIDGRTLKVSGIDLLDGTPVLDIKPYIPYSDAFPKARAGWLEGLKSD 174
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BLAST of mRNA_H-elongata_contig12637.1964.1 vs. uniprot
Match: R1DL83_EMIHU (TsaA-like domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DL83_EMIHU)

HSP 1 Score: 188 bits (477), Expect = 3.930e-50
Identity = 95/176 (53.98%), Postives = 119/176 (67.61%), Query Frame = 1 
Query: 1471 YTDAFVDAAAKMEITYRPIALIRSPYRERFGTPRQPQVTASVLQGRAQEGQIIFLKGHGYEEALQDLDGFDMIWVLSHMHLNRGWNRKVRPPRLPEERK-GLFSTRSPHRPNPMALSSLRVKRVDVSRGVIYVHGLDLLDGTPVLDIKPYIGYCDAFPDARIGWLEELGSNHEGQG 1995
            YTDAF D AA   +T  PI +IRSPY+ERFGTPRQP VT  V  G AQ G I      G +  L+ L GFD  W ++ MHLN GW   VRPPR P   K G+F+TR+PHRPNP+ALS+L+V  VD +   + V GLDLLDGTPVLD+KPY+ Y D+FP A+ GW++E+ +  +  G
Sbjct:   32 YTDAFADHAAA-PVTLTPIGVIRSPYKERFGTPRQPTVTTQVSGGGAQRGCIELRPDAGLDHTLRGLAGFDYCWAITLMHLNAGWKPLVRPPRGPRRAKQGVFATRAPHRPNPIALSALKVVEVDEAALRVTVEGLDLLDGTPVLDLKPYVPYADSFPRAKAGWVDEVRAEEDRLG 206
[Close]
BLAST of mRNA_H-elongata_contig12637.1964.1 vs. uniprot
Match: A0A812QIS2_9DINO (TrmO protein n=1 Tax=Symbiodinium sp. CCMP2456 TaxID=1519616 RepID=A0A812QIS2_9DINO)

HSP 1 Score: 187 bits (475), Expect = 4.190e-50
Identity = 92/180 (51.11%), Postives = 124/180 (68.89%), Query Frame = 1 
Query: 1447 SRPKERGTYTDAFVDAAAKMEITYRPIALIRSPYRERFGTPRQPQVTASVLQGRAQEGQIIFLKGHGYEE-----ALQDLDGFDMIWVLSHMHLNRGWNRKVRPPRLPEERKGLFSTRSPHRPNPMALSSLRVKRVDVSRGVIYVHGLDLLDGTPVLDIKPYIGYCDAFPDARIGWLEEL 1971
            SRP +   +TDAF      ME++ + +A++RSPY+ERFG PRQP VT  VL G A  G +  +      E     AL++L GF+ IWV+S++H+N GW+  V PPR P  ++GLF+TR+PHRPN + LS+ R+  VD ++  + VHGLDLLDGTPVLDIKPY+ YCD+F  AR GWLEE+
Sbjct:   68 SRPPQ--VHTDAF---PTPMEVSMQTLAVVRSPYKERFGCPRQPTVTEGVLGGEAGAGFLELVPSDQNPEEKLRMALRELSGFEFIWVISYLHMNEGWSASVTPPRGPRRKRGLFATRAPHRPNHIGLSACRLLGVDAAKLQVSVHGLDLLDGTPVLDIKPYVPYCDSFAGARAGWLEEI 242
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12637.1964.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LBB4_9PHAE2.890e-20460.87TsaA-like domain-containing protein n=2 Tax=Ectoca... [more]
A0A835YNQ9_9STRA6.210e-6363.64TsaA-like domain-containing protein n=1 Tax=Tribon... [more]
A0A7S3XP01_HETAK3.100e-5454.29Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S1WEL1_ALECA2.990e-5349.73Hypothetical protein n=1 Tax=Alexandrium catenella... [more]
A0A7V8E2B3_9BACT6.400e-5361.07TsaA-like domain-containing protein n=1 Tax=Planct... [more]
A0A6N6JQK0_9BACT3.210e-5256.79tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyl... [more]
A0A0G4F040_VITBC3.410e-5255.56TsaA-like domain-containing protein n=2 Tax=Vitrel... [more]
UPI001AD54E4C1.520e-5055.83tRNA (Adenine(37)-N6)-methyltransferase n=2 Tax=Pl... [more]
R1DL83_EMIHU3.930e-5053.98TsaA-like domain-containing protein n=1 Tax=Emilia... [more]
A0A812QIS2_9DINO4.190e-5051.11TrmO protein n=1 Tax=Symbiodinium sp. CCMP2456 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12637contigH-elongata_contig12637:1305..5057 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score612.8
Seed ortholog evalue1.6e-172
Seed eggNOG ortholog2880.D7FI01
EggNOG free text desc.tRNA (adenine-N6-)-methyltransferase activity
EggNOG OGsCOG1720@1,KOG2942@2759
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTsaA-like domain
Ec32 orthologEc-12_006540.1
Exons5
Model size2485
Cds size1746
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929748.8736496-UTR-H-elongata_contig12637:1304..16911622929748.8736496-UTR-H-elongata_contig12637:1304..1691Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12637 1305..1691 +
1691679142.476942-UTR-H-elongata_contig12637:1304..16911691679142.476942-UTR-H-elongata_contig12637:1304..1691Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12637 1305..1691 +
1622929748.9865649-UTR-H-elongata_contig12637:4705..50571622929748.9865649-UTR-H-elongata_contig12637:4705..5057Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12637 4706..5057 +
1691679142.5357327-UTR-H-elongata_contig12637:4705..50571691679142.5357327-UTR-H-elongata_contig12637:4705..5057Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12637 4706..5057 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929748.8898356-CDS-H-elongata_contig12637:1691..17691622929748.8898356-CDS-H-elongata_contig12637:1691..1769Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12637 1692..1769 +
1691679142.4870913-CDS-H-elongata_contig12637:1691..17691691679142.4870913-CDS-H-elongata_contig12637:1691..1769Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12637 1692..1769 +
1622929748.9093423-CDS-H-elongata_contig12637:1948..31341622929748.9093423-CDS-H-elongata_contig12637:1948..3134Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12637 1949..3134 +
1691679142.4981632-CDS-H-elongata_contig12637:1948..31341691679142.4981632-CDS-H-elongata_contig12637:1948..3134Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12637 1949..3134 +
1622929748.9292178-CDS-H-elongata_contig12637:3698..39351622929748.9292178-CDS-H-elongata_contig12637:3698..3935Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12637 3699..3935 +
1691679142.5076187-CDS-H-elongata_contig12637:3698..39351691679142.5076187-CDS-H-elongata_contig12637:3698..3935Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12637 3699..3935 +
1622929748.9452713-CDS-H-elongata_contig12637:4252..42861622929748.9452713-CDS-H-elongata_contig12637:4252..4286Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12637 4253..4286 +
1691679142.5158577-CDS-H-elongata_contig12637:4252..42861691679142.5158577-CDS-H-elongata_contig12637:4252..4286Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12637 4253..4286 +
1622929748.967649-CDS-H-elongata_contig12637:4494..47051622929748.967649-CDS-H-elongata_contig12637:4494..4705Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12637 4495..4705 +
1691679142.5259192-CDS-H-elongata_contig12637:4494..47051691679142.5259192-CDS-H-elongata_contig12637:4494..4705Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12637 4495..4705 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12637.1964.1prot_H-elongata_contig12637.1964.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig12637 1692..4705 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig12637.1964.1

>prot_H-elongata_contig12637.1964.1 ID=prot_H-elongata_contig12637.1964.1|Name=mRNA_H-elongata_contig12637.1964.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=582bp
MSIKAHISEGIKSAGCGYAQARRPAKLLLLPSAAFIGAGRFLPHSDCQEH
LVTLGQARAATTGLNELRVLYVSCSWSNHGRGERDWDARDFKTTRDFLQR
NPNLVFVYVGRSCMVSDSDNSLRASQLRHVPCALMRADCMLILPPHSGNL
AWEADSPMIKCQHHSDLRSHALGSWARMELALAAMGQAKVYVAFRAVPYP
ESVFELEPGKSNVRDIVKKAVDTLKNDAGPSGAGEANAMTGNVSFEIDVT
AKVGAQGNGVDNKLMASTAAVMEACENWLSADLNPLKALEEARVVVTVAE
KHGNVKVLESVRRMHPISPSDKLIVGVRAALGEEHIKGSGELALCLLLFS
VLCSRPKERGTYTDAFVDAAAKMEITYRPIALIRSPYRERFGTPRQPQVT
ASVLQGRAQEGQIIFLKGHGYEEALQDLDGFDMIWVLSHMHLNRGWNRKV
RPPRLPEERKGLFSTRSPHRPNPMALSSLRVKRVDVSRGVIYVHGLDLLD
GTPVLDIKPYIGYCDAFPDARIGWLEELGSNHEGQGDFLSKFSVGAALVH
TVNSSQNDGASSSTILVNQTEDASSTDFVNI*
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mRNA from alignment at H-elongata_contig12637:1305..5057+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig12637.1964.1 ID=mRNA_H-elongata_contig12637.1964.1|Name=mRNA_H-elongata_contig12637.1964.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3753bp|location=Sequence derived from alignment at H-elongata_contig12637:1305..5057+ (Himanthalia elongata Himel1 dioecious)
CCTGGACTGTCAGGGATTTCCAAGATGGTTCGACTTTTAAGGTATATACG
GGGTTGAACTCGCCCCTGCTTTGCAGTGTAAGGTCGCCAACAAAAGTGGG
TTAGCCATAGTCATCATCCTGGCATCATATAACAACTCTCAAGTAATTGG
GGCTAGAATAATTGTGGATCAATCGTCGATTTCACCCTGCTGCTTCATCC
TGCTGCTGGTTGATTTGCGAGTGGATTATTCCAGGCCGTACGTGCCTCGT
TCATTAACGTATGAGTAATGGTATGATCCAACCAAGTGTTCCTATTCTGA
TAGGACTGTCCTTGGCGTTGGTGGTTGGATTCGTCGCCGGTCACTTCTCC
GCGTGTCGATGCAAGCAGCAGCAGCAGCAGCAGCCACATGAGTATCAAGG
CCCACATATCCGAGGGAATAAAAAGCGCAGGATGCGGATACGCACAAGCG
AGGAGGCCCGCGAAACGAGAGCGGCTGGGCCGAAGAAGGCATCCATATCG
TCGGTCCAAGCCAACCCCAATCAACTTTCTCGAAGGATGCGCAAGCGAAA
CAAAAAGCTTGCTCCTAAGGACCAGGCTCTCGATGCCTTCGTGAGGGTCG
CACGCTCTCACGTCGAGTACATCGGCGCCGGTGACTACGGGTCTCTCCTG
CTCCTACCGAGCGCAGCCTTTATCGGCGCCGGGCGCTTCTTGCCTCACTC
GGATTGCCAGGAGCACCTGGTAACACTCGGGCAGGCACGCGCGGCAACGA
CCGGTCTAAATGAACTGCGCGTTCTCTACGTCAGTTGCTCATGGTCAAAC
CACGGCCGCGGTGAGAGAGACTGGGATGCAAGAGACTTCAAAACCACCCG
GGATTTCCTTCAGCGCAACCCTAACCTGGTGTTCGTGTATGTGGGCCGGT
CGTGTATGGTGAGCGACTCTGACAACTCGTTGAGGGCCTCGCAACTTCGG
CACGTGCCGTGTGCGCTAATGCGAGCTGACTGCATGTTGATCCTCCCGCC
CCATTCGGGCAATTTAGCGTGGGAAGCAGACTCGCCGATGATAAAATGTC
AACATCACAGCGATTTAAGGTCACACGCTCTAGGATCGTGGGCACGTATG
GAACTTGCGTTGGCGGCCATGGGCCAGGCGAAGGTGTATGTTGCCTTTCG
TGCCGTACCCTATCCTGAATCTGTGTTCGAGCTTGAACCAGGTAAGAGTA
ATGTACGAGATATCGTCAAAAAGGCTGTAGACACTCTAAAGAATGATGCA
GGGCCATCGGGTGCGGGTGAGGCCAACGCCATGACGGGTAACGTCTCCTT
CGAGATCGATGTGACGGCCAAGGTCGGAGCACAGGGAAATGGAGTCGATA
ATAAATTGATGGCTTCGACGGCGGCGGTAATGGAGGCCTGTGAAAATTGG
CTAAGCGCAGACTTGAACCCGCTTAAAGCGCTAGAAGAAGCGCGGGTGGT
TGTGACGGTGGCAGAAAAACACGGTAATGTCAAGGTGCTGGAGAGCGTCC
GAAGAATGCATCCAATTTCGCCATCGGATAAGTTGATCGTAGGCGTGCGT
GCCGCATTGGGGGAAGAGCACATCAAAGGATCCGGAGAGCTCGCCTTGTG
TTTACTCCTCTTCTCCGTGCTTTGCTCCCGACCGAAGGAACGAGGAACGT
ACACTGACGCCTTTGTTGACGCCGCCGCTAAAATGGAAATCACGTATCGC
CCCATTGCACTGATAAGAAGCCCGTATCGAGAGCGTTTCGGGACCCCGCG
GCAGCCGCAGGTAACCGCTTCAGTCCTGCAAGGTCGTGCGCAAGAGGGAC
AGATTATTTTCCTCAAGGGACACGGCTATGGTGAGTCCGTGTAGCAAACC
AGGGTGTGTCTTTGGCTTCGCCCTCGCCCGCGGACAGTTGTCCAGCTAAC
GTGTGCCGTGAAGGCGATGATCGATTAGAACATTCTCGCTCTGGCGCGAC
TGGAATCAGCTTATTCGATTATTTCAAGAACGTTGATGCTCATAATCGTC
TTCATGGACCATTCAACGCACTTCATGTCGATGGGACCATCGACGTGCTC
GGTAACCATTCCTACCTACCGCAACGCTGCCCATCCAATATCCATAATCC
CGCCTGTGGTCCTAATTGATATATCTAACCACCTCTCCCCGGTTCACGCC
GACGCTTTTTTTTTTATCATGGTGCAGGTCAAGCGTTCCTACACCTCTTC
AATCGATTATTGGACTTTGCCTTCTCACGTCCTCGTGCTTTCCGCCAAAA
TAATTGGTATTTTACAGAGATTCCACCCCAGGGTGCTGTACAACCGTTCT
TGGAGGGCAGTTTAACTCCTGAAGTGTAGAGTGTTTGATGTATACCGAGG
AATCACATTCTTCCACCTGGCCTCTTTATTATCCTTTGACGCAGAGGAAG
CCTTACAAGACTTGGACGGCTTCGACATGATCTGGGTACTATCGCACATG
CATCTCAATAGGGGCTGGAACCGTAAGGTCCGACCACCGCGACTTCCCGA
GGAGCGCAAGGGTCTTTTCTCCACCCGAAGCCCACACCGTCCGAACCCCA
TGGCGCTCTCATCTCTTCGAGTGAAAAGAGTTGATGTCTCAAGGGGCGTT
ATCTACGTGCACGGTCTTGACCTGCTTGATGGTGAGCCAGGAAGCTTAAC
AATCTGGGATGCGATTACGAGTACGAACAGGACACTCGAAAATTCCACGA
CAAACGCCTGTTCGAGTATTATAATAGCTGTTCCCAGGTCGACGCAAAAT
TATTTTTTGGAATTAATTAACGTGCTGCACCTCGGAGCATACATCAAATA
GAGGTCAGCAGATCATTCTCATCCGCCTCGTTACTTACTCCTGAACACCA
AGGTTCTAGTACATGATGCTTCTCGTAGTCCTCCCTCTGATGCCCCCTCT
GCCCACTCCTCGCGATCAACTCGCTGACGTCTTCACGGGGATCGATAGGT
ACTCCGGTGCTGGACATCAAACCGTACATCGGGTGAGCGCGTCATCATCA
TGAGCAACTCGTCAGTTGTTGCCCTTTGGTCGATCCACCTCGCGTGATCC
TCTTTGTCTATGATACTACCCGTTGCGGCGATGATCTTTCAAATGATTTC
CTCCGGCAGACATACATCATTGTCGTCGACTTTCAAAGGTTCTCTCTACC
CATTTGTCGACCGCGACTCCGTTTTTGAAATGATTCGCAGCTACTGCGAT
GCGTTTCCAGATGCAAGGATCGGCTGGCTAGAGGAGCTCGGATCGAACCA
CGAGGGTCAAGGGGACTTCCTCTCTAAATTCAGCGTGGGCGCCGCTCTTG
TGCACACCGTGAACAGCTCGCAGAATGACGGAGCTTCCTCGAGTACGATC
TTGGTGAACCAGACTGAAGATGCTTCATCGACTGATTTTGTAAATATATG
ATAACACATCGATGATTATCCGTCGATGTTGTATCCCATGACACGCTATT
TTCGTAATTTAACTTACCTGTAAAGTGTATTGGAAGCTTGTGGTCTCATG
GTTTTGCTGTCCTTACCAAGCGTGAATGTTGGATGGCTACCGCCACAAGG
ATCCTCTCGTGGATGAGACCTTCGCTGACCCTAAAGCTTCGGCGCATCTG
AGAGCGAGCAACACTTTTGATTGATTGGTTGAATTCTCACATAAGCTGAT
GTCAAAATTTAGCCCGTGGTCACAGTAGAAAAACACCATCCGGAAGGAAA
AAAGCAGATTTTAAAGTCGTAGACTGTACAAGCCGTTGTTTATTGAACAC
ATC
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Coding sequence (CDS) from alignment at H-elongata_contig12637:1305..5057+

>mRNA_H-elongata_contig12637.1964.1 ID=mRNA_H-elongata_contig12637.1964.1|Name=mRNA_H-elongata_contig12637.1964.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3492bp|location=Sequence derived from alignment at H-elongata_contig12637:1305..5057+ (Himanthalia elongata Himel1 dioecious)
ATGAGTATCAAGGCCCACATATCCGAGGGAATAAAAAGCGCAGGATGCGG
ATACGCACAAGCGAGGAGGCCCGCGAAAATGAGTATCAAGGCCCACATAT
CCGAGGGAATAAAAAGCGCAGGATGCGGATACGCACAAGCGAGGAGGCCC
GCGAAACTCCTGCTCCTACCGAGCGCAGCCTTTATCGGCGCCGGGCGCTT
CTTGCCTCACTCGGATTGCCAGGAGCACCTGGTAACACTCGGGCAGGCAC
GCGCGGCAACGACCGGTCTAAATGAACTGCGCGTTCTCTACGTCAGTTGC
TCATGGTCAAACCACGGCCGCGGTGAGAGAGACTGGGATGCAAGAGACTT
CAAAACCACCCGGGATTTCCTTCAGCGCAACCCTAACCTGGTGTTCGTGT
ATGTGGGCCGGTCGTGTATGGTGAGCGACTCTGACAACTCGTTGAGGGCC
TCGCAACTTCGGCACGTGCCGTGTGCGCTAATGCGAGCTGACTGCATGTT
GATCCTCCCGCCCCATTCGGGCAATTTAGCGTGGGAAGCAGACTCGCCGA
TGATAAAATGTCAACATCACAGCGATTTAAGGTCACACGCTCTAGGATCG
TGGGCACGTATGGAACTTGCGTTGGCGGCCATGGGCCAGGCGAAGGTGTA
TGTTGCCTTTCGTGCCGTACCCTATCCTGAATCTGTGTTCGAGCTTGAAC
CAGGTAAGAGTAATGTACGAGATATCGTCAAAAAGGCTGTAGACACTCTA
AAGAATGATGCAGGGCCATCGGGTGCGGGTGAGGCCAACGCCATGACGGG
TAACGTCTCCTTCGAGATCGATGTGACGGCCAAGGTCGGAGCACAGGGAA
ATGGAGTCGATAATAAATTGATGGCTTCGACGGCGGCGGTAATGGAGGCC
TGTGAAAATTGGCTAAGCGCAGACTTGAACCCGCTTAAAGCGCTAGAAGA
AGCGCGGGTGGTTGTGACGGTGGCAGAAAAACACGGTAATGTCAAGGTGC
TGGAGAGCGTCCGAAGAATGCATCCAATTTCGCCATCGGATAAGTTGATC
GTAGGCGTGCGTGCCGCATTGGGGGAAGAGCACATCAAAGGATCCGGAGA
GCTCGCCTTGTGTTTACTCCTCTTCTCCGTGCTTTGCTCCCGACCGAAGG
AACGAGGAACGTACACTGACGCCTTTGTTGACGCCGCCGCTAAAATGGAA
ATCACGTATCGCCCCATTGCACTGATAAGAAGCCCGTATCGAGAGCGTTT
CGGGACCCCGCGGCAGCCGCAGGTAACCGCTTCAGTCCTGCAAGGTCGTG
CGCAAGAGGGACAGATTATTTTCCTCAAGGGACACGGCTATGCTCCTGCT
CCTACCGAGCGCAGCCTTTATCGGCGCCGGGCGCTTCTTGCCTCACTCGG
ATTGCCAGGAGCACCTGGTAACACTCGGGCAGGCACGCGCGGCAACGACC
GGTCTAAATGAACTGCGCGTTCTCTACGTCAGTTGCTCATGGTCAAACCA
CGGCCGCGGTGAGAGAGACTGGGATGCAAGAGACTTCAAAACCACCCGGG
ATTTCCTTCAGCGCAACCCTAACCTGGTGTTCGTGTATGTGGGCCGGTCG
TGTATGGTGAGCGACTCTGACAACTCGTTGAGGGCCTCGCAACTTCGGCA
CGTGCCGTGTGCGCTAATGCGAGCTGACTGCATGTTGATCCTCCCGCCCC
ATTCGGGCAATTTAGCGTGGGAAGCAGACTCGCCGATGATAAAATGTCAA
CATCACAGCGATTTAAGGTCACACGCTCTAGGATCGTGGGCACGTATGGA
ACTTGCGTTGGCGGCCATGGGCCAGGCGAAGGTGTATGTTGCCTTTCGTG
CCGTACCCTATCCTGAATCTGTGTTCGAGCTTGAACCAGGTAAGAGTAAT
GTACGAGATATCGTCAAAAAGGCTGTAGACACTCTAAAGAATGATGCAGG
GCCATCGGGTGCGGGTGAGGCCAACGCCATGACGGGTAACGTCTCCTTCG
AGATCGATGTGACGGCCAAGGTCGGAGCACAGGGAAATGGAGTCGATAAT
AAATTGATGGCTTCGACGGCGGCGGTAATGGAGGCCTGTGAAAATTGGCT
AAGCGCAGACTTGAACCCGCTTAAAGCGCTAGAAGAAGCGCGGGTGGTTG
TGACGGTGGCAGAAAAACACGGTAATGTCAAGGTGCTGGAGAGCGTCCGA
AGAATGCATCCAATTTCGCCATCGGATAAGTTGATCGTAGGCGTGCGTGC
CGCATTGGGGGAAGAGCACATCAAAGGATCCGGAGAGCTCGCCTTGTGTT
TACTCCTCTTCTCCGTGCTTTGCTCCCGACCGAAGGAACGAGGAACGTAC
ACTGACGCCTTTGTTGACGCCGCCGCTAAAATGGAAATCACGTATCGCCC
CATTGCACTGATAAGAAGCCCGTATCGAGAGCGTTTCGGGACCCCGCGGC
AGCCGCAGGTAACCGCTTCAGTCCTGCAAGGTCGTGCGCAAGAGGGACAG
ATTATTTTCCTCAAGGGACACGGCTATGAGGAAGCCTTACAAGACTTGGA
CGGCTTCGACATGATCTGGGTACTATCGCACATGCATCTCAATAGGGGCT
GGAACCGTAAGGTCCGACCACCGCGACTTCCCGAGGAGCGCAAGGGTCTT
TTCTCCACCCGAAGCCCACACCGTCCGAACCCCATGGCGCTCTCATCTCT
TCGAGTGAAAAGAGTTGATGTCTCAAGGGGCGTTATCTACGTGCACGGTC
TTGACCTGCTTGATGAGGAAGCCTTACAAGACTTGGACGGCTTCGACATG
ATCTGGGTACTATCGCACATGCATCTCAATAGGGGCTGGAACCGTAAGGT
CCGACCACCGCGACTTCCCGAGGAGCGCAAGGGTCTTTTCTCCACCCGAA
GCCCACACCGTCCGAACCCCATGGCGCTCTCATCTCTTCGAGTGAAAAGA
GTTGATGTCTCAAGGGGCGTTATCTACGTGCACGGTCTTGACCTGCTTGA
TGGTACTCCGGTGCTGGACATCAAACCGTACATCGGGTACTCCGGTGCTG
GACATCAAACCGTACATCGGCTACTGCGATGCGTTTCCAGATGCAAGGAT
CGGCTGGCTAGAGGAGCTCGGATCGAACCACGAGGGTCAAGGGGACTTCC
TCTCTAAATTCAGCGTGGGCGCCGCTCTTGTGCACACCGTGAACAGCTCG
CAGAATGACGGAGCTTCCTCGAGTACGATCTTGGTGAACCAGACTGAAGA
TGCTTCATCGACTGATTTTGTAAATATATGACTACTGCGATGCGTTTCCA
GATGCAAGGATCGGCTGGCTAGAGGAGCTCGGATCGAACCACGAGGGTCA
AGGGGACTTCCTCTCTAAATTCAGCGTGGGCGCCGCTCTTGTGCACACCG
TGAACAGCTCGCAGAATGACGGAGCTTCCTCGAGTACGATCTTGGTGAAC
CAGACTGAAGATGCTTCATCGACTGATTTTGTAAATATATGA
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