mRNA_H-elongata_contig126354.1963.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig126354.1963.1
Unique NamemRNA_H-elongata_contig126354.1963.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig126354.1963.1 vs. uniprot
Match: A0A2P4XWG1_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XWG1_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 7.340e-16
Identity = 52/154 (33.77%), Postives = 78/154 (50.65%), Query Frame = 1
Query:   46 ALEAGLPSDAKTRLRDLLLGPLFDGFRRSLSGDPQARVEPLQVKLKVDADLSKVKARPRVYSPTKTSWLDEQFAQLADAGMVYENPQAMCENPDQAVLK--GNGYRLVCDFKAVNQQSEPVAAPPMLLEEQASAFARAALFMTVDLNQGYWQMP 501
            A+  G P +    LR +    +FD +R  L GDP A+V PL ++LK      K KARP  Y P    +L +  A+L   G VYEN ++   +    V K   N +R  CD++A+N+++EP+A    +L          A F   D  +G+WQ+P
Sbjct:  145 AISNGFPPERSNELRTVAF--MFDIWRLKLGGDPPAKVPPLLIRLKEGVKPQKCKARP--YPPHIREFLRDFNAELERMGWVYENTRSRWASAALPVRKPGSNEFRQACDYRALNEETEPIAGVMPILRVITEHVRGMAHFGLFDFLKGFWQLP 294          
BLAST of mRNA_H-elongata_contig126354.1963.1 vs. uniprot
Match: A0A671TR06_SPAAU (Ribonuclease H n=1 Tax=Sparus aurata TaxID=8175 RepID=A0A671TR06_SPAAU)

HSP 1 Score: 65.5 bits (158), Expect = 2.650e-9
Identity = 35/99 (35.35%), Postives = 50/99 (50.51%), Query Frame = 1
Query:  205 VKARPRVYSPTKTSWLDEQFAQLADAGMVYENPQAMCENPDQAVLKGNGYRLVCDFKAVNQQSEPVAAPPMLLEEQASAFARAALFMTVDLNQGYWQMP 501
            +K RP   SPTK   + EQ  ++  AG+V  +             K  G+R   DF+ VN  +E  A P   + E   + + AA+F T+DLN GYWQ+P
Sbjct: 1356 IKQRPYHMSPTKQIIVKEQLREMLTAGIVEPSHSGWASPVVLPPKKDGGHRFCADFRKVNATTETDAYPLPNINEILESLSGAAVFSTIDLNSGYWQVP 1454          
BLAST of mRNA_H-elongata_contig126354.1963.1 vs. uniprot
Match: A0A498L8Q1_LABRO (Ribonuclease H n=1 Tax=Labeo rohita TaxID=84645 RepID=A0A498L8Q1_LABRO)

HSP 1 Score: 63.9 bits (154), Expect = 4.720e-9
Identity = 54/156 (34.62%), Postives = 77/156 (49.36%), Query Frame = 1
Query:   34 AVDGALEAGLPSDAKTRLRDLLLGPLFDGFRRSLSGDPQARVEPLQVKLKVDADLSKVKARPRVYSPTKTSWLDEQFAQLADAGMVYENPQAMCENPDQAVLKGNGYRLVC-DFKAVNQQSEPVAAPPMLLEEQASAFARAALFMTVDLNQGYWQM 498
            AVDGA    LP D K +LR +L         R        R + LQ +L V   +  +K RP   SP+K + + EQ  ++  AG+V  +  A   +P   V K +G    C D++ VN  +E  A P   + E   + A AA+F T+DLN GYWQ+
Sbjct:   63 AVDGA---HLPPDGKQQLRRILESNCQVCTLRP------GRTDVLQHRLYVTHPVP-IKQRPYRMSPSKQAVVREQLEEMLKAGIVEPSHSAWA-SPVVLVPKKDGKMRFCVDYRKVNAITESDAYPIPNITEILESLAGAAIFSTIDLNSGYWQV 207          
BLAST of mRNA_H-elongata_contig126354.1963.1 vs. uniprot
Match: A0A8C2FG76_CYPCA (Ribonuclease H n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C2FG76_CYPCA)

HSP 1 Score: 60.1 bits (144), Expect = 1.770e-7
Identity = 48/156 (30.77%), Postives = 76/156 (48.72%), Query Frame = 1
Query:   52 EAGLPSDAKTRLRDLLLGPLFDGFRRSLSGDPQA------RVEPLQVKLKVDADLSKVKARPRVYSPTKTSWLDEQFAQLADAGMVYENPQAMCENPDQAVLKGNGYRLVC-DFKAVNQQSEPVAAPPMLLEEQASAFARAALFMTVDLNQGYWQM 498
            EA LP+D K +LR +L              +PQ       R + LQ  + +   +  +K RP   SP K + +++Q  ++  AG+V E   +   +P   V K +G    C D++ VN  +E  A P   + E   + + AA+F T+DLN GYWQ+
Sbjct:   13 EAHLPADGKYQLRKVL------------EANPQVCALKPGRTDVLQHHIYLTQQVP-IKQRPYRMSPIKQAVVEKQLEEMLSAGIV-EPSHSGWASPVVLVPKKDGSLRFCVDYRKVNAITESDAYPLPNITEILESLSGAAIFSTIDLNSGYWQV 154          
BLAST of mRNA_H-elongata_contig126354.1963.1 vs. uniprot
Match: A0A6P6PD10_CARAU (activity-regulated cytoskeleton-associated protein isoform X1 n=1 Tax=Carassius auratus TaxID=7957 RepID=A0A6P6PD10_CARAU)

HSP 1 Score: 58.5 bits (140), Expect = 6.040e-7
Identity = 47/156 (30.13%), Postives = 72/156 (46.15%), Query Frame = 1
Query:   37 VDGAL-EAGLPSDAKTRLRDLLLGPLFDGFRRSLSGDPQARVEPLQVKLKVDADLSKVKARPRVYSPTKTSWLDEQFAQLADAGMVYENPQAMCENPDQAVLKGNGYRLVCDFKAVNQQSEPVAAPPMLLEEQASAFARAALFMTVDLNQGYWQMP 501
            +D AL EA LP D + +LR LL     +  R   +  P  R   LQ  L     +  +K RP   +P K + + EQ  ++  A ++  +  A          K    R   D++ +N  +E  A P   + E   + + AA+F T+DLN GYWQ+P
Sbjct:  525 IDNALKEATLPHDEEIQLRHLL-----ESHRTVCTRRP-GRTTVLQHCLYTRHPVP-IKQRPYRLTPAKQAIVKEQIEEMLKADIIEPSYSAWASPVVLVPKKDGSLRFCVDYRKINALTESDAYPIPNITEILESLSDAAIFSTLDLNCGYWQVP 673          
BLAST of mRNA_H-elongata_contig126354.1963.1 vs. uniprot
Match: A0A6P6QVS0_CARAU (uncharacterized protein LOC113114602 n=3 Tax=Cyprininae TaxID=2743694 RepID=A0A6P6QVS0_CARAU)

HSP 1 Score: 57.4 bits (137), Expect = 1.660e-6
Identity = 35/99 (35.35%), Postives = 53/99 (53.54%), Query Frame = 1
Query:  205 VKARPRVYSPTKTSWLDEQFAQLADAGMVYENPQAMCENPDQAVLKGNG-YRLVCDFKAVNQQSEPVAAPPMLLEEQASAFARAALFMTVDLNQGYWQM 498
            +K RP   SP K   L+EQ  ++   G+V  +  A   +P   V K +G +R   D++ VN  +E  A P   + E   + + AA+F T+DLN GYWQ+
Sbjct:  822 IKQRPYRLSPLKQIALEEQLDEMLMQGIVEPSHSAWA-SPVVLVPKKDGKFRFCVDYRKVNSVTESDAYPLPNITEILESLSGAAIFSTIDLNSGYWQV 919          
BLAST of mRNA_H-elongata_contig126354.1963.1 vs. uniprot
Match: UPI001E277322 (uncharacterized protein LOC123686605 n=1 Tax=Harmonia axyridis TaxID=115357 RepID=UPI001E277322)

HSP 1 Score: 56.6 bits (135), Expect = 2.980e-6
Identity = 45/160 (28.12%), Postives = 75/160 (46.88%), Query Frame = 1
Query:   25 LMAAVDGALEAGLPSDAKTRLRDLLLGPLFDGFRRSLSGDPQARVEPLQVKLKVDADLSKVKARPRVYSPTKTSWLDEQFAQLADAGMVYENPQAMCENPDQAVLKGNG-YRLVCDFKAVNQQSEPVAAPPMLLEEQASAFARAALFMTVDLNQGYWQMP 501
            + AA +  L+  L  + +TRL   L   L  G    LSG      + ++ K+++   +  +K R R  +P      D++  ++ +  ++ E  ++   +P   V K +G YR   DF+AVN+ S   A P   +        RA    T+DL QGYWQ+P
Sbjct:  732 IQAAAEHLLD--LTGEQRTRLESFLTEEL--GKFTQLSGT----TDLIEHKIRLKPGIEPIKQRYRPQNPKMQEIFDQEVDRMLEERVI-EPSKSPWSSPVVLVKKKDGKYRFCIDFRAVNEASVKDAYPLPYISGILDKLRRARYISTIDLKQGYWQIP 882          
BLAST of mRNA_H-elongata_contig126354.1963.1 vs. uniprot
Match: UPI001E276687 (uncharacterized protein LOC123686607 n=1 Tax=Harmonia axyridis TaxID=115357 RepID=UPI001E276687)

HSP 1 Score: 54.7 bits (130), Expect = 1.380e-5
Identity = 45/160 (28.12%), Postives = 75/160 (46.88%), Query Frame = 1
Query:   25 LMAAVDGALEAGLPSDAKTRLRDLLLGPLFDGFRRSLSGDPQARVEPLQVKLKVDADLSKVKARPRVYSPTKTSWLDEQFAQLADAGMVYENPQAMCENPDQAVLKGNG-YRLVCDFKAVNQQSEPVAAPPMLLEEQASAFARAALFMTVDLNQGYWQMP 501
            + AA +  L+  L  + +TRL   L   L    +  LSG      + ++ K+K+   +  +K R R  +P      D++  ++ +  ++ E  ++   +P   V K +G YR   DF+AVN+ S   A P   +        RA    T+DL QGYWQ+P
Sbjct:  978 IQAAAEHLLD--LTGEQRTRLDSFLTEELRKFTQ--LSGT----TDLIEHKIKLKPGIEPIKQRYRPQNPKMQEIFDQEVDRMLEERVI-EPSKSPWSSPVVLVKKKDGKYRFCIDFRAVNEASVKDAYPLPYISGILDKLRRARYISTIDLKQGYWQIP 1128          
BLAST of mRNA_H-elongata_contig126354.1963.1 vs. uniprot
Match: A0A8C1KLQ8_CYPCA (Uncharacterized protein n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1KLQ8_CYPCA)

HSP 1 Score: 54.3 bits (129), Expect = 1.910e-5
Identity = 30/98 (30.61%), Postives = 47/98 (47.96%), Query Frame = 1
Query:  208 KARPRVYSPTKTSWLDEQFAQLADAGMVYENPQAMCENPDQAVLKGNGYRLVCDFKAVNQQSEPVAAPPMLLEEQASAFARAALFMTVDLNQGYWQMP 501
            K RP    P K + + +Q  ++  AG++  +  A          K    R   D++ VN  +E  A P   + E   + + AA+F T+DLN GYWQ+P
Sbjct:  853 KQRPYRLPPAKQAIVKDQIEEMLKAGIIEPSYSAWASPVVLVPKKDGSLRFCVDYRKVNALTESDAYPIPNITEILESLSGAAIFSTLDLNCGYWQVP 950          
BLAST of mRNA_H-elongata_contig126354.1963.1 vs. uniprot
Match: A0A8C2FMM3_CYPCA (Ribonuclease H n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C2FMM3_CYPCA)

HSP 1 Score: 53.1 bits (126), Expect = 4.200e-5
Identity = 33/99 (33.33%), Postives = 51/99 (51.52%), Query Frame = 1
Query:  205 VKARPRVYSPTKTSWLDEQFAQLADAGMVYENPQAMCENPDQAVLKGNGYRLVC-DFKAVNQQSEPVAAPPMLLEEQASAFARAALFMTVDLNQGYWQM 498
            +K RP   SP K   + EQ  ++  AG+V E   +   +P   V K +G    C D++ +N  +E  A P   + E   + +  A+F T+DLN GYWQ+
Sbjct:  108 IKQRPYRMSPAKQFVVKEQLEEMVKAGIV-EPSHSGWASPVVLVPKKDGSLRFCVDYRKLNAVTENDAYPIPNITEILESLSGTAIFTTIDLNSGYWQV 205          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig126354.1963.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A2P4XWG1_9STRA7.340e-1633.77Uncharacterized protein n=1 Tax=Phytophthora palmi... [more]
A0A671TR06_SPAAU2.650e-935.35Ribonuclease H n=1 Tax=Sparus aurata TaxID=8175 Re... [more]
A0A498L8Q1_LABRO4.720e-934.62Ribonuclease H n=1 Tax=Labeo rohita TaxID=84645 Re... [more]
A0A8C2FG76_CYPCA1.770e-730.77Ribonuclease H n=1 Tax=Cyprinus carpio TaxID=7962 ... [more]
A0A6P6PD10_CARAU6.040e-730.13activity-regulated cytoskeleton-associated protein... [more]
A0A6P6QVS0_CARAU1.660e-635.35uncharacterized protein LOC113114602 n=3 Tax=Cypri... [more]
UPI001E2773222.980e-628.13uncharacterized protein LOC123686605 n=1 Tax=Harmo... [more]
UPI001E2766871.380e-528.13uncharacterized protein LOC123686607 n=1 Tax=Harmo... [more]
A0A8C1KLQ8_CYPCA1.910e-530.61Uncharacterized protein n=1 Tax=Cyprinus carpio Ta... [more]
A0A8C2FMM3_CYPCA4.200e-533.33Ribonuclease H n=1 Tax=Cyprinus carpio TaxID=7962 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig126354contigH-elongata_contig126354:763..1263 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score86.7
Seed ortholog evalue1.1e-14
Seed eggNOG ortholog164328.Phyra81909
EggNOG free text desc.transposition
EggNOG OGs2SIHC@2759,COG2801@1
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size501
Cds size474
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929748.786918-UTR-H-elongata_contig126354:762..7891622929748.786918-UTR-H-elongata_contig126354:762..789Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig126354 763..789 +
1691679142.454986-UTR-H-elongata_contig126354:762..7891691679142.454986-UTR-H-elongata_contig126354:762..789Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig126354 763..789 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929748.8053799-CDS-H-elongata_contig126354:789..12631622929748.8053799-CDS-H-elongata_contig126354:789..1263Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig126354 790..1263 +
1691679142.468025-CDS-H-elongata_contig126354:789..12631691679142.468025-CDS-H-elongata_contig126354:789..1263Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig126354 790..1263 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig126354.1963.1prot_H-elongata_contig126354.1963.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig126354 790..1263 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig126354.1963.1

>prot_H-elongata_contig126354.1963.1 ID=prot_H-elongata_contig126354.1963.1|Name=mRNA_H-elongata_contig126354.1963.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=158bp
MAAVDGALEAGLPSDAKTRLRDLLLGPLFDGFRRSLSGDPQARVEPLQVK
LKVDADLSKVKARPRVYSPTKTSWLDEQFAQLADAGMVYENPQAMCENPD
QAVLKGNGYRLVCDFKAVNQQSEPVAAPPMLLEEQASAFARAALFMTVDL
NQGYWQMP
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mRNA from alignment at H-elongata_contig126354:763..1263+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig126354.1963.1 ID=mRNA_H-elongata_contig126354.1963.1|Name=mRNA_H-elongata_contig126354.1963.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=501bp|location=Sequence derived from alignment at H-elongata_contig126354:763..1263+ (Himanthalia elongata Himel1 dioecious)
GAAGTAATCGCCCGTCGAGAAGTGCTGATGGCGGCCGTAGATGGTGCGCT GGAGGCTGGCTTGCCGTCTGACGCCAAGACTCGTCTACGTGATCTCTTGC TTGGACCACTGTTTGATGGTTTTCGCCGATCATTGTCGGGGGATCCACAG GCGAGGGTGGAACCTTTACAAGTGAAGCTGAAGGTGGATGCCGATTTGTC CAAGGTGAAAGCAAGGCCAAGGGTATATTCACCAACAAAGACTTCATGGT TGGACGAGCAGTTTGCACAACTTGCCGACGCCGGAATGGTGTACGAGAAC CCGCAAGCGATGTGTGAAAATCCTGACCAGGCGGTTTTGAAGGGCAATGG CTACCGCTTAGTTTGTGATTTCAAGGCTGTTAATCAACAGAGTGAGCCGG TGGCAGCCCCGCCAATGCTTTTGGAGGAACAGGCGTCGGCGTTTGCTAGA GCGGCGCTGTTTATGACGGTGGATCTGAACCAAGGGTACTGGCAAATGCC G
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Coding sequence (CDS) from alignment at H-elongata_contig126354:763..1263+

>mRNA_H-elongata_contig126354.1963.1 ID=mRNA_H-elongata_contig126354.1963.1|Name=mRNA_H-elongata_contig126354.1963.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=948bp|location=Sequence derived from alignment at H-elongata_contig126354:763..1263+ (Himanthalia elongata Himel1 dioecious)
ATGGCGGCCGTAGATGGTGCGCTGGAGGCTGGCTTGCCGTCTGACGCCAA
GACTCGTCTACGTGATCTCTTGCTTGGACCACTGTTTGATGGTTTTCGCC
GATCATTGTCGGGGGATCCACAGGCGAGGGTGGAACCTTTACAAGTGAAG
CTGAAGGTGGATGCCGATTTGTCCAAGGTGAAAGCAAGGCCAAGGGTATA
TTCACCAACAAAGACTTCATGGTTGGACGAGCAGTTTGCACAACTTGCCG
ACGCCGGAATGGTGTACGAGAACCCGCAAGCGATGTGTGAAAATCCTGAC
CAGGCGGTTTTGAAGGGCAATGGCTACCGCTTAGTTTGTGATTTCAAGGC
TGTTAATCAACAGAGTGAGCCGGTGGCAGCCCCGCCAATGCTTTTGGAGG
AACAGGCGTCGGCGTTTGCTAGAGCGGCGCTGTTTATGACGGTGGATCTG
AACCAAGGGTACTGGCAAATGCCGATGGCGGCCGTAGATGGTGCGCTGGA
GGCTGGCTTGCCGTCTGACGCCAAGACTCGTCTACGTGATCTCTTGCTTG
GACCACTGTTTGATGGTTTTCGCCGATCATTGTCGGGGGATCCACAGGCG
AGGGTGGAACCTTTACAAGTGAAGCTGAAGGTGGATGCCGATTTGTCCAA
GGTGAAAGCAAGGCCAAGGGTATATTCACCAACAAAGACTTCATGGTTGG
ACGAGCAGTTTGCACAACTTGCCGACGCCGGAATGGTGTACGAGAACCCG
CAAGCGATGTGTGAAAATCCTGACCAGGCGGTTTTGAAGGGCAATGGCTA
CCGCTTAGTTTGTGATTTCAAGGCTGTTAATCAACAGAGTGAGCCGGTGG
CAGCCCCGCCAATGCTTTTGGAGGAACAGGCGTCGGCGTTTGCTAGAGCG
GCGCTGTTTATGACGGTGGATCTGAACCAAGGGTACTGGCAAATGCCG
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