mRNA_H-elongata_contig12633.1961.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig12633.1961.1
Unique Name	mRNA_H-elongata_contig12633.1961.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

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BLAST of mRNA_H-elongata_contig12633.1961.1 vs. uniprot
Match: A0A6H5JZI2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZI2_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 1.920e-20
Identity = 41/46 (89.13%), Postives = 44/46 (95.65%), Query Frame = 1

Query:    1 DRLFHALDSNNTGRISFDDFVVGLAVCCRGTLEEKMRFIFSVYDMD 138
            DRLFHALDSN +GRISFDDFVVGLAVCCRGTLEEKMRF+F VYDM+
Sbjct:   68 DRLFHALDSNKSGRISFDDFVVGLAVCCRGTLEEKMRFLFGVYDMN 113

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BLAST of mRNA_H-elongata_contig12633.1961.1 vs. uniprot
Match: T1IEX0_RHOPR (Uncharacterized protein (Fragment) n=1 Tax=Rhodnius prolixus TaxID=13249 RepID=T1IEX0_RHOPR)

HSP 1 Score: 62.8 bits (151), Expect = 1.530e-10
Identity = 25/44 (56.82%), Postives = 36/44 (81.82%), Query Frame = 1

Query:    7 LFHALDSNNTGRISFDDFVVGLAVCCRGTLEEKMRFIFSVYDMD 138
            +FH LD +N G +SF DFV GL+V CRG+LEE++R+ FS+YD++
Sbjct:  125 VFHTLDQSNNGTLSFQDFVQGLSVLCRGSLEERLRWTFSLYDIN 168

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BLAST of mRNA_H-elongata_contig12633.1961.1 vs. uniprot
Match: A0A2R5G5N4_9STRA (Protein kinase, putative n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G5N4_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 3.820e-10
Identity = 25/46 (54.35%), Postives = 35/46 (76.09%), Query Frame = 1

Query:    1 DRLFHALDSNNTGRISFDDFVVGLAVCCRGTLEEKMRFIFSVYDMD 138
            +RLF+  D  +TG + F++FV GLA+C RGT EEK+R IF +YD+D
Sbjct:   84 ERLFYVFDHKHTGAVDFEEFVSGLALCLRGTFEEKVRVIFRIYDID 129

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BLAST of mRNA_H-elongata_contig12633.1961.1 vs. uniprot
Match: A0A8I6RR78_CIMLE (Uncharacterized protein n=1 Tax=Cimex lectularius TaxID=79782 RepID=A0A8I6RR78_CIMLE)

HSP 1 Score: 61.6 bits (148), Expect = 4.160e-10
Identity = 23/44 (52.27%), Postives = 35/44 (79.55%), Query Frame = 1

Query:    7 LFHALDSNNTGRISFDDFVVGLAVCCRGTLEEKMRFIFSVYDMD 138
            +FH LD  N G +SF D V+GL++ CRG+LEE++R+ FS+YD++
Sbjct:  127 VFHTLDQGNNGTLSFQDLVIGLSILCRGSLEERLRWTFSLYDIN 170

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BLAST of mRNA_H-elongata_contig12633.1961.1 vs. uniprot
Match: A0A553PHW0_TIGCA (Uncharacterized protein (Fragment) n=1 Tax=Tigriopus californicus TaxID=6832 RepID=A0A553PHW0_TIGCA)

HSP 1 Score: 60.5 bits (145), Expect = 5.000e-10
Identity = 26/44 (59.09%), Postives = 35/44 (79.55%), Query Frame = 1

Query:    7 LFHALDSNNTGRISFDDFVVGLAVCCRGTLEEKMRFIFSVYDMD 138
            +F  LD N++G I+F DFVVGL++  RGTLEEK+R+ FS+YD D
Sbjct:   57 VFSTLDRNDSGVITFQDFVVGLSILIRGTLEEKLRWTFSLYDQD 100

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BLAST of mRNA_H-elongata_contig12633.1961.1 vs. uniprot
Match: A0A7S0H5G5_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0H5G5_9EUKA)

HSP 1 Score: 62.0 bits (149), Expect = 5.220e-10
Identity = 22/46 (47.83%), Postives = 34/46 (73.91%), Query Frame = 1

Query:    1 DRLFHALDSNNTGRISFDDFVVGLAVCCRGTLEEKMRFIFSVYDMD 138
            DR+F A D N  G +   +F+VG+++CCRGTL EK++F F ++D+D
Sbjct:  308 DRIFKAFDMNKDGEVDIKEFIVGMSLCCRGTLPEKLKFCFRIFDLD 353

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BLAST of mRNA_H-elongata_contig12633.1961.1 vs. uniprot
Match: UPI000A2A514F (neuronal calcium sensor 1 isoform X4 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A514F)

HSP 1 Score: 60.8 bits (146), Expect = 6.590e-10
Identity = 25/44 (56.82%), Postives = 34/44 (77.27%), Query Frame = 1

Query:    7 LFHALDSNNTGRISFDDFVVGLAVCCRGTLEEKMRFIFSVYDMD 138
            LF+  D N  GRISF+DFV+GL+V   GTL+EKM++ F +YD+D
Sbjct:  106 LFNVFDQNKNGRISFEDFVLGLSVSLHGTLDEKMKWAFQLYDLD 149

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BLAST of mRNA_H-elongata_contig12633.1961.1 vs. uniprot
Match: UPI000A2A64F0 (neuronal calcium sensor 1 isoform X1 n=4 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A64F0)

HSP 1 Score: 60.8 bits (146), Expect = 7.560e-10
Identity = 25/44 (56.82%), Postives = 34/44 (77.27%), Query Frame = 1

Query:    7 LFHALDSNNTGRISFDDFVVGLAVCCRGTLEEKMRFIFSVYDMD 138
            LF+  D N  GRISF+DFV+GL+V   GTL+EKM++ F +YD+D
Sbjct:  120 LFNVFDQNKNGRISFEDFVLGLSVSLHGTLDEKMKWAFQLYDLD 163

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BLAST of mRNA_H-elongata_contig12633.1961.1 vs. uniprot
Match: A0A8D9AKQ4_9HEMI (Kv channel-interacting protein 1 n=1 Tax=Cacopsylla melanoneura TaxID=428564 RepID=A0A8D9AKQ4_9HEMI)

HSP 1 Score: 58.5 bits (140), Expect = 1.540e-9
Identity = 22/44 (50.00%), Postives = 38/44 (86.36%), Query Frame = 1

Query:    7 LFHALDSNNTGRISFDDFVVGLAVCCRGTLEEKMRFIFSVYDMD 138
            +F++LD N  G ++F+DFV GL+V CRG+++EK+R+IF++YD++
Sbjct:   21 VFNSLDHNKLGYLNFEDFVKGLSVLCRGSMDEKLRWIFTLYDIN 64

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BLAST of mRNA_H-elongata_contig12633.1961.1 vs. uniprot
Match: A0A6P8HWL1_ACTTE (neuronal calcium sensor 1-like isoform X4 n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8HWL1_ACTTE)

HSP 1 Score: 59.7 bits (143), Expect = 1.800e-9
Identity = 23/44 (52.27%), Postives = 35/44 (79.55%), Query Frame = 1

Query:    7 LFHALDSNNTGRISFDDFVVGLAVCCRGTLEEKMRFIFSVYDMD 138
            LF+  D N  G+ISF+DFV+GL++   GTL+EKM++ F++YD+D
Sbjct:  107 LFNVFDQNKNGKISFEDFVLGLSISLHGTLDEKMKWAFNLYDLD 150

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig12633.1961.1 vs. uniprot

BLAST of mRNA_H-elongata_contig12633.1961.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JZI2_9PHAE	1.920e-20	89.13	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
T1IEX0_RHOPR	1.530e-10	56.82	Uncharacterized protein (Fragment) n=1 Tax=Rhodniu...	[more]
A0A2R5G5N4_9STRA	3.820e-10	54.35	Protein kinase, putative n=1 Tax=Hondaea fermental...	[more]
A0A8I6RR78_CIMLE	4.160e-10	52.27	Uncharacterized protein n=1 Tax=Cimex lectularius ...	[more]
A0A553PHW0_TIGCA	5.000e-10	59.09	Uncharacterized protein (Fragment) n=1 Tax=Tigriop...	[more]
A0A7S0H5G5_9EUKA	5.220e-10	47.83	Hypothetical protein (Fragment) n=1 Tax=Amorphochl...	[more]
UPI000A2A514F	6.590e-10	56.82	neuronal calcium sensor 1 isoform X4 n=1 Tax=Exaip...	[more]
UPI000A2A64F0	7.560e-10	56.82	neuronal calcium sensor 1 isoform X1 n=4 Tax=Exaip...	[more]
A0A8D9AKQ4_9HEMI	1.540e-9	50.00	Kv channel-interacting protein 1 n=1 Tax=Cacopsyll...	[more]
A0A6P8HWL1_ACTTE	1.800e-9	52.27	neuronal calcium sensor 1-like isoform X4 n=1 Tax=...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig12633	contig	H-elongata_contig12633:1581..1718 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Arthropoda
Seed ortholog score	63.5
Seed ortholog evalue	2.9e-08
Seed eggNOG ortholog	13249.RPRC014839-PA
EggNOG free text desc.	EF-hand domain pair
EggNOG OGs	39R6Q@33154,3BES0@33208,3CYFK@33213,3EA52@33342,3SJT7@50557,41W5N@6656,COG5126@1,KOG0044@2759
Ec32 ortholog	Ec-11_000480.1
COG Functional cat.	T
Best tax level	Paraneoptera
Best eggNOG OG	NA\|NA\|NA
Hectar predicted targeting category	no signal peptide or anchor
Ec32 ortholog description	EF-hand domain pair
Ec32 ortholog	Ec-01_007440.1
Exons	1
Model size	138
Cds size	138
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929748.732967-CDS-H-elongata_contig12633:1580..1718	1622929748.732967-CDS-H-elongata_contig12633:1580..1718	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig12633 1581..1718 +
1691679142.4319158-CDS-H-elongata_contig12633:1580..1718	1691679142.4319158-CDS-H-elongata_contig12633:1580..1718	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig12633 1581..1718 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig12633.1961.1	prot_H-elongata_contig12633.1961.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig12633 1581..1718 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig12633:1581..1718+
coding sequence from alignment at H-elongata_contig12633:1581..1718+

protein sequence of mRNA_H-elongata_contig12633.1961.1

>prot_H-elongata_contig12633.1961.1 ID=prot_H-elongata_contig12633.1961.1|Name=mRNA_H-elongata_contig12633.1961.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=46bp
DRLFHALDSNNTGRISFDDFVVGLAVCCRGTLEEKMRFIFSVYDMD

mRNA from alignment at H-elongata_contig12633:1581..1718+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig12633.1961.1 ID=mRNA_H-elongata_contig12633.1961.1|Name=mRNA_H-elongata_contig12633.1961.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=138bp|location=Sequence derived from alignment at H-elongata_contig12633:1581..1718+ (Himanthalia elongata Himel1 dioecious)
GACCGATTGTTTCACGCGCTGGACAGCAATAACACGGGCAGGATCTCCTT
CGATGATTTTGTTGTGGGCTTGGCCGTTTGCTGCCGCGGTACCCTCGAGG
AAAAGATGCGATTCATTTTCAGTGTCTACGACATGGAT

Coding sequence (CDS) from alignment at H-elongata_contig12633:1581..1718+

>mRNA_H-elongata_contig12633.1961.1 ID=mRNA_H-elongata_contig12633.1961.1|Name=mRNA_H-elongata_contig12633.1961.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=276bp|location=Sequence derived from alignment at H-elongata_contig12633:1581..1718+ (Himanthalia elongata Himel1 dioecious)
GACCGATTGTTTCACGCGCTGGACAGCAATAACACGGGCAGGATCTCCTT
CGATGATTTTGTTGTGGGCTTGGCCGTTTGCTGCCGCGGTACCCTCGAGG
AAAAGATGCGATTCATTTTCAGTGTCTACGACATGGATGACCGATTGTTT
CACGCGCTGGACAGCAATAACACGGGCAGGATCTCCTTCGATGATTTTGT
TGTGGGCTTGGCCGTTTGCTGCCGCGGTACCCTCGAGGAAAAGATGCGAT
TCATTTTCAGTGTCTACGACATGGAT