prot_H-elongata_contig126272.1958.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig126272.1958.1
Unique Nameprot_H-elongata_contig126272.1958.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length59
Homology
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BLAST of mRNA_H-elongata_contig126272.1958.1 vs. uniprot
Match: D7FQT0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQT0_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 3.450e-22
Identity = 46/57 (80.70%), Postives = 51/57 (89.47%), Query Frame = 0 
Query:    1 SSVKKRVRLTSSGNLKRGQTGMRHNTGPKPSSRLRRLGRTRLIEGKQKKKILWMLGS 57
            SSVKKRVR+T SGNLKRGQ+GMRH TGPKP SRLR LG+T+LI GKQKKK+LWMLG 
Sbjct:   18 SSVKKRVRITGSGNLKRGQSGMRHITGPKPRSRLRSLGQTKLILGKQKKKVLWMLGG 74
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BLAST of mRNA_H-elongata_contig126272.1958.1 vs. uniprot
Match: A0A6H5JU63_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU63_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 3.870e-22
Identity = 46/57 (80.70%), Postives = 51/57 (89.47%), Query Frame = 0 
Query:    1 SSVKKRVRLTSSGNLKRGQTGMRHNTGPKPSSRLRRLGRTRLIEGKQKKKILWMLGS 57
            SSVKKRVR+T SGNLKRGQ+GMRH TGPKP SRLR LG+T+LI GKQKKK+LWMLG 
Sbjct:   35 SSVKKRVRITGSGNLKRGQSGMRHITGPKPRSRLRNLGQTKLILGKQKKKVLWMLGG 91
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig126272.1958.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQT0_ECTSI3.450e-2280.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JU63_9PHAE3.870e-2280.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.530coord: 1..56
e-value: 2.7E-11
score: 45.9
IPR021137Ribosomal protein L35PFAMPF01632Ribosomal_L35pcoord: 1..55
e-value: 6.7E-12
score: 45.7
IPR037229Ribosomal protein L35 superfamilySUPERFAMILY143034L35p-likecoord: 1..56

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig126272contigH-elongata_contig126272:854..1030 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig126272.1958.1mRNA_H-elongata_contig126272.1958.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig126272 854..1030 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig126272.1958.1 ID=prot_H-elongata_contig126272.1958.1|Name=mRNA_H-elongata_contig126272.1958.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=59bp
SSVKKRVRLTSSGNLKRGQTGMRHNTGPKPSSRLRRLGRTRLIEGKQKKK
ILWMLGSG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR021137Ribosomal_L35
IPR037229Ribosomal_L35_sf