mRNA_H-elongata_contig126272.1958.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig126272.1958.1
Unique NamemRNA_H-elongata_contig126272.1958.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig126272.1958.1 vs. uniprot
Match: D7FQT0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQT0_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 3.450e-22
Identity = 46/57 (80.70%), Postives = 51/57 (89.47%), Query Frame = 1 
Query:    1 SSVKKRVRLTSSGNLKRGQTGMRHNTGPKPSSRLRRLGRTRLIEGKQKKKILWMLGS 171
            SSVKKRVR+T SGNLKRGQ+GMRH TGPKP SRLR LG+T+LI GKQKKK+LWMLG 
Sbjct:   18 SSVKKRVRITGSGNLKRGQSGMRHITGPKPRSRLRSLGQTKLILGKQKKKVLWMLGG 74
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BLAST of mRNA_H-elongata_contig126272.1958.1 vs. uniprot
Match: A0A6H5JU63_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU63_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 3.870e-22
Identity = 46/57 (80.70%), Postives = 51/57 (89.47%), Query Frame = 1 
Query:    1 SSVKKRVRLTSSGNLKRGQTGMRHNTGPKPSSRLRRLGRTRLIEGKQKKKILWMLGS 171
            SSVKKRVR+T SGNLKRGQ+GMRH TGPKP SRLR LG+T+LI GKQKKK+LWMLG 
Sbjct:   35 SSVKKRVRITGSGNLKRGQSGMRHITGPKPRSRLRNLGQTKLILGKQKKKVLWMLGG 91
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig126272.1958.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQT0_ECTSI3.450e-2280.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JU63_9PHAE3.870e-2280.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig126272contigH-elongata_contig126272:854..1030 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size177
Cds size177
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929748.4226303-CDS-H-elongata_contig126272:853..10301622929748.4226303-CDS-H-elongata_contig126272:853..1030Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig126272 854..1030 -
1691679142.3052065-CDS-H-elongata_contig126272:853..10301691679142.3052065-CDS-H-elongata_contig126272:853..1030Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig126272 854..1030 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig126272.1958.1prot_H-elongata_contig126272.1958.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig126272 854..1030 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig126272.1958.1

>prot_H-elongata_contig126272.1958.1 ID=prot_H-elongata_contig126272.1958.1|Name=mRNA_H-elongata_contig126272.1958.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=59bp
SSVKKRVRLTSSGNLKRGQTGMRHNTGPKPSSRLRRLGRTRLIEGKQKKK
ILWMLGSG*
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mRNA from alignment at H-elongata_contig126272:854..1030-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig126272.1958.1 ID=mRNA_H-elongata_contig126272.1958.1|Name=mRNA_H-elongata_contig126272.1958.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=177bp|location=Sequence derived from alignment at H-elongata_contig126272:854..1030- (Himanthalia elongata Himel1 dioecious)
TCCTCGGTGAAGAAGCGCGTAAGATTGACCAGCTCTGGGAACCTAAAACG
AGGACAGACGGGGATGAGACATAACACGGGCCCGAAACCTAGTTCCCGGC
TGCGTCGGTTGGGGCGAACGCGACTTATTGAAGGAAAGCAGAAGAAGAAG
ATTCTTTGGATGCTTGGGTCCGGTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig126272:854..1030-

>mRNA_H-elongata_contig126272.1958.1 ID=mRNA_H-elongata_contig126272.1958.1|Name=mRNA_H-elongata_contig126272.1958.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=354bp|location=Sequence derived from alignment at H-elongata_contig126272:854..1030- (Himanthalia elongata Himel1 dioecious)
TCCTCGGTGAAGAAGCGCGTAAGATTGACCAGCTCTGGGAACCTAAAACG
AGGACAGACGGGGATGAGACATAACACGGGCCCGAAACCTAGTTCCCGGC
TGCGTCGGTTGGGGCGAACGCGACTTATTGAAGGAAAGCAGAAGAAGAAG
ATTCTTTGGATGCTTGGGTCCGGTTGATCCTCGGTGAAGAAGCGCGTAAG
ATTGACCAGCTCTGGGAACCTAAAACGAGGACAGACGGGGATGAGACATA
ACACGGGCCCGAAACCTAGTTCCCGGCTGCGTCGGTTGGGGCGAACGCGA
CTTATTGAAGGAAAGCAGAAGAAGAAGATTCTTTGGATGCTTGGGTCCGG
TTGA
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