mRNA_H-elongata_contig12614.1950.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig12614.1950.1
Unique NamemRNA_H-elongata_contig12614.1950.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig12614.1950.1 vs. uniprot
Match: D7FRE3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRE3_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 5.610e-33
Identity = 56/62 (90.32%), Postives = 59/62 (95.16%), Query Frame = 1 
Query:    1 EALVDRLNVQSLPIRAYLDQTVVPLLLDGMSALVKERPPNPVEWLGNYLLRHNPQSAPPGGN 186
            E+L DRLNVQSLPIRAYLDQTVVP+LLDGMSALVKERPPNPVEWLGNYLLR+NPQSAPP  N
Sbjct:   47 ESLQDRLNVQSLPIRAYLDQTVVPILLDGMSALVKERPPNPVEWLGNYLLRNNPQSAPPAAN 108
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BLAST of mRNA_H-elongata_contig12614.1950.1 vs. uniprot
Match: A0A812XI25_SYMMI (Dpy30 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812XI25_SYMMI)

HSP 1 Score: 100 bits (249), Expect = 1.310e-26
Identity = 46/56 (82.14%), Postives = 52/56 (92.86%), Query Frame = 1 
Query:    1 EALVDRLNVQSLPIRAYLDQTVVPLLLDGMSALVKERPPNPVEWLGNYLLRHNPQS 168
            EA  D+LN+Q+LPIRAYLDQTVVP+LLDGMSALVKERPPNPVEWL  YLL+HNPQ+
Sbjct:    9 EAAQDKLNLQALPIRAYLDQTVVPILLDGMSALVKERPPNPVEWLSTYLLKHNPQN 64
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BLAST of mRNA_H-elongata_contig12614.1950.1 vs. uniprot
Match: A0A482SE97_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SE97_9ARCH)

HSP 1 Score: 98.6 bits (244), Expect = 7.580e-26
Identity = 45/56 (80.36%), Postives = 52/56 (92.86%), Query Frame = 1 
Query:    1 EALVDRLNVQSLPIRAYLDQTVVPLLLDGMSALVKERPPNPVEWLGNYLLRHNPQS 168
            EA  ++LN+Q+LPIRAYLDQTVVPLLLDGMSALVKERPPNP+EWL  YLL+HNPQ+
Sbjct:    9 EAAQEKLNLQALPIRAYLDQTVVPLLLDGMSALVKERPPNPIEWLAAYLLKHNPQN 64
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BLAST of mRNA_H-elongata_contig12614.1950.1 vs. uniprot
Match: A0A7R9Y8P1_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y8P1_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 4.790e-25
Identity = 44/57 (77.19%), Postives = 53/57 (92.98%), Query Frame = 1 
Query:    1 EALVDRLNVQSLPIRAYLDQTVVPLLLDGMSALVKERPPNPVEWLGNYLLRHNPQSA 171
            +A+ DR+N+QSLPIRAYLDQTVVP+LLDGMSALVKERPPNPVEWL  YL+++NPQ +
Sbjct:   46 QAVQDRMNLQSLPIRAYLDQTVVPILLDGMSALVKERPPNPVEWLAAYLIKNNPQGS 102
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BLAST of mRNA_H-elongata_contig12614.1950.1 vs. uniprot
Match: A0A0P1B2Z2_PLAHL (Dpy-30 like protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B2Z2_PLAHL)

HSP 1 Score: 94.4 bits (233), Expect = 3.690e-23
Identity = 43/62 (69.35%), Postives = 53/62 (85.48%), Query Frame = 1 
Query:    1 EALVDRLNVQSLPIRAYLDQTVVPLLLDGMSALVKERPPNPVEWLGNYLLRHNPQSAPPGGN 186
            E + D++ VQ+LPIRAYLDQTVVP+LL GMSALVKERPPNP+EWL  YL+++NPQ A  GG+
Sbjct:   90 ENVQDKVEVQALPIRAYLDQTVVPILLQGMSALVKERPPNPIEWLAAYLIKNNPQGASGGGD 151
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BLAST of mRNA_H-elongata_contig12614.1950.1 vs. uniprot
Match: A0A7S2GF22_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2GF22_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 6.530e-23
Identity = 42/62 (67.74%), Postives = 52/62 (83.87%), Query Frame = 1 
Query:    1 EALVDRLNVQSLPIRAYLDQTVVPLLLDGMSALVKERPPNPVEWLGNYLLRHNPQSAPPGGN 186
            E +  ++N+Q+LPIRAYLDQTVVP+LLDGMSALVKERPPNPVEWL  YL+++NPQ +    N
Sbjct:   74 EQVQAKMNLQALPIRAYLDQTVVPILLDGMSALVKERPPNPVEWLATYLIKNNPQGSSAAAN 135
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BLAST of mRNA_H-elongata_contig12614.1950.1 vs. uniprot
Match: D0NCH7_PHYIT (Uncharacterized protein n=3 Tax=Phytophthora infestans TaxID=4787 RepID=D0NCH7_PHYIT)

HSP 1 Score: 92.4 bits (228), Expect = 2.050e-22
Identity = 42/60 (70.00%), Postives = 52/60 (86.67%), Query Frame = 1 
Query:    1 EALVDRLNVQSLPIRAYLDQTVVPLLLDGMSALVKERPPNPVEWLGNYLLRHNPQSAPPG 180
            E++ D++ VQ+LPIRAYLDQTVVP+LL GMSALVKERPPNP+EWL  YLL++NPQ +  G
Sbjct:   90 ESVQDKVEVQALPIRAYLDQTVVPILLQGMSALVKERPPNPIEWLAAYLLKNNPQGSSGG 149
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BLAST of mRNA_H-elongata_contig12614.1950.1 vs. uniprot
Match: A0A6S9FEM6_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S9FEM6_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 2.470e-22
Identity = 44/59 (74.58%), Postives = 53/59 (89.83%), Query Frame = 1 
Query:   16 RLNVQSLPIRAYLDQTVVPLLLDGMSALVKERPPNPVEWLGNYLLRHNPQSAP---PGG 183
            ++N+Q+LPIRAYLDQTVVP+LLDGMS LVKERPPNP+EWL +YLLRH+PQ+A    PGG
Sbjct:  164 QMNLQTLPIRAYLDQTVVPILLDGMSELVKERPPNPIEWLASYLLRHDPQAAGAPGPGG 222
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BLAST of mRNA_H-elongata_contig12614.1950.1 vs. uniprot
Match: F0YEQ0_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YEQ0_AURAN)

HSP 1 Score: 89.4 bits (220), Expect = 2.500e-22
Identity = 40/51 (78.43%), Postives = 47/51 (92.16%), Query Frame = 1 
Query:   19 LNVQSLPIRAYLDQTVVPLLLDGMSALVKERPPNPVEWLGNYLLRHNPQSA 171
            ++VQSLPIRAYLD TVVP+LLDGMSALVKERPPNPVEWL  YL+++NPQ +
Sbjct:    1 MHVQSLPIRAYLDTTVVPILLDGMSALVKERPPNPVEWLATYLIKNNPQGS 51
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BLAST of mRNA_H-elongata_contig12614.1950.1 vs. uniprot
Match: A0A836CC20_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC20_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 2.770e-22
Identity = 45/55 (81.82%), Postives = 52/55 (94.55%), Query Frame = 1 
Query:    1 EALVDRLNVQSLPIRAYLDQTVVPLLLDGMSALVKERPPNPVEWLGNYLLRHNPQ 165
            EAL +RLN+Q+LPIRAYLDQTVVP+LLDGM+AL KERPPNPVEWL +YLLR+NPQ
Sbjct:  696 EALQERLNMQTLPIRAYLDQTVVPILLDGMAALAKERPPNPVEWLASYLLRNNPQ 750
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12614.1950.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRE3_ECTSI5.610e-3390.32Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A812XI25_SYMMI1.310e-2682.14Dpy30 protein n=1 Tax=Symbiodinium microadriaticum... [more]
A0A482SE97_9ARCH7.580e-2680.36Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7R9Y8P1_9STRA4.790e-2577.19Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A0P1B2Z2_PLAHL3.690e-2369.35Dpy-30 like protein n=1 Tax=Plasmopara halstedii T... [more]
A0A7S2GF22_9STRA6.530e-2367.74Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
D0NCH7_PHYIT2.050e-2270.00Uncharacterized protein n=3 Tax=Phytophthora infes... [more]
A0A6S9FEM6_9STRA2.470e-2274.58Hypothetical protein n=3 Tax=Ditylum brightwellii ... [more]
F0YEQ0_AURAN2.500e-2278.43Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A836CC20_9STRA2.770e-2281.82Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12614contigH-elongata_contig12614:4788..5505 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.9
Seed ortholog evalue1.8e-24
Seed eggNOG ortholog2880.D7FRE3
Preferred nameDPY30
KEGG koko:K14965,ko:K14968
GOsGO:0000003,GO:0000228,GO:0000785,GO:0000790,GO:0002682,GO:0003006,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005794,GO:0005802,GO:0006323,GO:0006325,GO:0006333,GO:0006338,GO:0006342,GO:0006348,GO:0006355,GO:0006464,GO:0006479,GO:0006807,GO:0006810,GO:0006928,GO:0006996,GO:0007275,GO:0007548,GO:0007549,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009653,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0012505,GO:0016043,GO:0016192,GO:0016197,GO:0016278,GO:0016279,GO:0016458,GO:0016569,GO:0016570,GO:0016571,GO:0016740,GO:0016741,GO:0018022,GO:0018024,GO:0018193,GO:0018205,GO:0019219,GO:0019222,GO:0019538,GO:0022414,GO:0022607,GO:0030154,GO:0030317,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031497,GO:0031507,GO:0031974,GO:0031981,GO:0031984,GO:0032259,GO:0032501,GO:0032502,GO:0032991,GO:0034401,GO:0034708,GO:0034968,GO:0035097,GO:0036211,GO:0040008,GO:0040011,GO:0040014,GO:0040029,GO:0042054,GO:0042464,GO:0042802,GO:0042803,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044431,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044665,GO:0044666,GO:0045138,GO:0045595,GO:0045637,GO:0045652,GO:0045814,GO:0045892,GO:0045934,GO:0046661,GO:0046907,GO:0046983,GO:0048188,GO:0048189,GO:0048519,GO:0048523,GO:0048638,GO:0048856,GO:0048869,GO:0048870,GO:0050789,GO:0050793,GO:0050794,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051239,GO:0051252,GO:0051253,GO:0051276,GO:0051568,GO:0051641,GO:0051649,GO:0051674,GO:0060255,GO:0060290,GO:0065007,GO:0070013,GO:0070828,GO:0070868,GO:0070869,GO:0071103,GO:0071704,GO:0071840,GO:0080090,GO:0090598,GO:0097549,GO:0097722,GO:0098791,GO:0140096,GO:1901564,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1903706,GO:1990234,GO:2000026,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.chromatin silencing at telomere
EggNOG OGsKOG4109@1,KOG4109@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDpy-30 motif
Ec32 orthologEc-21_002620.1
Exons2
Model size189
Cds size189
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929747.5714598-CDS-H-elongata_contig12614:4787..48661622929747.5714598-CDS-H-elongata_contig12614:4787..4866Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12614 4788..4866 -
1691679141.976273-CDS-H-elongata_contig12614:4787..48661691679141.976273-CDS-H-elongata_contig12614:4787..4866Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12614 4788..4866 -
1622929747.5844069-CDS-H-elongata_contig12614:5395..55051622929747.5844069-CDS-H-elongata_contig12614:5395..5505Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12614 5396..5505 -
1691679141.9888103-CDS-H-elongata_contig12614:5395..55051691679141.9888103-CDS-H-elongata_contig12614:5395..5505Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12614 5396..5505 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12614.1950.1prot_H-elongata_contig12614.1950.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig12614 4788..5505 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig12614.1950.1

>prot_H-elongata_contig12614.1950.1 ID=prot_H-elongata_contig12614.1950.1|Name=mRNA_H-elongata_contig12614.1950.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=63bp
EALVDRLNVQSLPIRAYLDQTVVPLLLDGMSALVKERPPNPVEWLGNYLL
RHNPQSAPPGGN*
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mRNA from alignment at H-elongata_contig12614:4788..5505-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig12614.1950.1 ID=mRNA_H-elongata_contig12614.1950.1|Name=mRNA_H-elongata_contig12614.1950.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=718bp|location=Sequence derived from alignment at H-elongata_contig12614:4788..5505- (Himanthalia elongata Himel1 dioecious)
GAAGCCCTCGTGGACCGCCTCAACGTGCAGTCGCTGCCGATTCGCGCGTA
TCTCGACCAGACCGTGGTTCCTCTTCTACTGGACGGGATGTCGGCACTCG
TGAAGGAGCGGTGCGTGAATAAAAACCCAACGTGCCCCCGCAATTCGCCA
GCAGACAGACAGACATACAACAGGCCGATAACAGATAGAGACGGCCGGTC
ACGGCATGATCGAGGAGTATGGTAACAGGAAAAAGGGTTGGTTATAGGTT
TTCTATTTGCTCAGCTCTTTCTCTTAATACAAAATATACTAGGTATTACG
CATTTGTTTATTATGTCTCAAAGAAAGCGAGCCGTTGGTTCGGGGGGGGA
GGGAGGAAGAGGAAGAGGCTGCCTTGCCCAGCAAAGTTGGATGAAAGGTG
TCACGAGAGAAGACGTGTTGCTAATGGGAAGAGGAGAGGGGGACTTGATC
GCTCGTCTAGAACGTTCTGGCCTTCCGTTTACACGGGACCGGTTCCTGTG
CGTGGTGCTTGCGCGCACGAGAGTACATCGTGGGCTTTGATTTACTCTCC
CGTTTGCTTTGCTTTGCCTTGCGTTGCTCTGCTCCACTCGACCTTTCGCT
TCGCGCGCACCCTTCCCACCAACTATATTCCTTCGGCAGCCCACCTAACC
CCGTCGAATGGTTGGGAAACTATCTTCTGAGGCACAACCCGCAAAGCGCA
CCCCCAGGAGGGAACTGA
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Coding sequence (CDS) from alignment at H-elongata_contig12614:4788..5505-

>mRNA_H-elongata_contig12614.1950.1 ID=mRNA_H-elongata_contig12614.1950.1|Name=mRNA_H-elongata_contig12614.1950.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=378bp|location=Sequence derived from alignment at H-elongata_contig12614:4788..5505- (Himanthalia elongata Himel1 dioecious)
GAAGCCCTCGTGGACCGCCTCAACGTGCAGTCGCTGCCGATTCGCGCGTA
TCTCGACCAGACCGTGGTTCCTCTTCTACTGGACGGGATGTCGGCACTCG
TGAAGGAGCGGAAGCCCTCGTGGACCGCCTCAACGTGCAGTCGCTGCCGA
TTCGCGCGTATCTCGACCAGACCGTGGTTCCTCTTCTACTGGACGGGATG
TCGGCACTCGTGAAGGAGCGCCCACCTAACCCCGTCGAATGGTTGGGAAA
CTATCTTCTGAGGCACAACCCGCAAAGCGCACCCCCAGGAGGGAACTGAC
CCACCTAACCCCGTCGAATGGTTGGGAAACTATCTTCTGAGGCACAACCC
GCAAAGCGCACCCCCAGGAGGGAACTGA
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