prot_H-elongata_contig126113.1947.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig126113.1947.1
Unique Nameprot_H-elongata_contig126113.1947.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length98
Homology
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BLAST of mRNA_H-elongata_contig126113.1947.1 vs. uniprot
Match: D8LK28_ECTSI (VWFA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK28_ECTSI)

HSP 1 Score: 124 bits (311), Expect = 5.660e-31
Identity = 61/94 (64.89%), Postives = 73/94 (77.66%), Query Frame = 0 
Query:    3 RQVDTNILNIDMAALGDAAPFATGDPTICKGCQACLSAVSILVTARAESQDVDIEGIYDWTCEFCGEVNRAELDDMEKPLEGQGSVDYMLEAAP 96
            R+VDTNILN+DMAALG+AAP+ATGD TIC  C+ACLSAVS+L     +S  V +E +YDWTCEFC + NR EL   E P+ GQ SVDY+LEAAP
Sbjct:  184 RKVDTNILNVDMAALGNAAPYATGDATICNDCRACLSAVSVLAPVSDDSGAV-VEDVYDWTCEFCHKTNRVELGRGELPVVGQDSVDYVLEAAP 276
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BLAST of mRNA_H-elongata_contig126113.1947.1 vs. uniprot
Match: A0A6H5JFL4_9PHAE (VWFA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFL4_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 3.220e-23
Identity = 51/83 (61.45%), Postives = 60/83 (72.29%), Query Frame = 0 
Query:   14 MAALGDAAPFATGDPTICKGCQACLSAVSILVTARAESQDVDIEGIYDWTCEFCGEVNRAELDDMEKPLEGQGSVDYMLEAAP 96
            MAALG+AAP+ATGD TIC  C+ACLSAVS+L     +S  V +E +YDWTCEFC   NR EL   E P+ GQ SVDY+LEA P
Sbjct:    1 MAALGNAAPYATGDATICSYCRACLSAVSVLAPVSDDSGAV-VEDVYDWTCEFCHNTNRVELGRGELPVVGQDSVDYVLEAPP 82
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BLAST of mRNA_H-elongata_contig126113.1947.1 vs. uniprot
Match: A0A7S3YA60_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YA60_HETAK)

HSP 1 Score: 67.4 bits (163), Expect = 4.350e-11
Identity = 39/97 (40.21%), Postives = 50/97 (51.55%), Query Frame = 0 
Query:    3 RQVDTNILNIDMAALGDAAPFA-TGDPTICKGCQACLSAVSILVTARAESQDVDIEGIYDWTCEFCGEVNRAELDDMEKPLEGQGSVDYMLEAAPIA 98
            RQVDTN++ ID+  LG  A    +GDP  C  C ACL++ S+L     E+          W CEFC   N  ++   EKP   Q SVDYML +   A
Sbjct:   83 RQVDTNVVRIDLGTLGSEADAVFSGDPQFCANCGACLNSESVLGPVEGEAFKQS------WECEFCEHANLLDMVAEEKP--SQASVDYMLSSGEAA 171
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig126113.1947.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LK28_ECTSI5.660e-3164.89VWFA domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JFL4_9PHAE3.220e-2361.45VWFA domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A7S3YA60_HETAK4.350e-1140.21Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036174Zinc finger, Sec23/Sec24-type superfamilySUPERFAMILY82919Zn-finger domain of Sec23/24coord: 22..76

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig126113contigH-elongata_contig126113:532..825 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig126113.1947.1mRNA_H-elongata_contig126113.1947.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig126113 532..825 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig126113.1947.1 ID=prot_H-elongata_contig126113.1947.1|Name=mRNA_H-elongata_contig126113.1947.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=98bp
VPRQVDTNILNIDMAALGDAAPFATGDPTICKGCQACLSAVSILVTARAE
SQDVDIEGIYDWTCEFCGEVNRAELDDMEKPLEGQGSVDYMLEAAPIA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036174Znf_Sec23_Sec24_sf