mRNA_H-elongata_contig126096.1943.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig126096.1943.1
Unique NamemRNA_H-elongata_contig126096.1943.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig126096.1943.1 vs. uniprot
Match: D8LQ27_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ27_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 3.050e-16
Identity = 39/44 (88.64%), Postives = 41/44 (93.18%), Query Frame = 1 
Query:    1 LQVHETPSEESVTLMGKDIEIRIAFKGQAKALKQFRTMLVPAGS 132
            L+VHETPSEESVTLMG DIEIRIAFKGQAKALKQFR MLVP G+
Sbjct:   90 LEVHETPSEESVTLMGTDIEIRIAFKGQAKALKQFRNMLVPTGT 133
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig126096.1943.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQ27_ECTSI3.050e-1688.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig126096contigH-elongata_contig126096:1348..1479 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-15_001190.1
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size132
Cds size132
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929746.674166-CDS-H-elongata_contig126096:1347..14791622929746.674166-CDS-H-elongata_contig126096:1347..1479Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig126096 1348..1479 -
1691679141.6457982-CDS-H-elongata_contig126096:1347..14791691679141.6457982-CDS-H-elongata_contig126096:1347..1479Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig126096 1348..1479 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig126096.1943.1prot_H-elongata_contig126096.1943.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig126096 1348..1479 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig126096.1943.1

>prot_H-elongata_contig126096.1943.1 ID=prot_H-elongata_contig126096.1943.1|Name=mRNA_H-elongata_contig126096.1943.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=44bp
LQVHETPSEESVTLMGKDIEIRIAFKGQAKALKQFRTMLVPAGS
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mRNA from alignment at H-elongata_contig126096:1348..1479-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig126096.1943.1 ID=mRNA_H-elongata_contig126096.1943.1|Name=mRNA_H-elongata_contig126096.1943.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=132bp|location=Sequence derived from alignment at H-elongata_contig126096:1348..1479- (Himanthalia elongata Himel1 dioecious)
CTGCAGGTACATGAGACCCCGTCAGAGGAGAGCGTGACTCTCATGGGAAA
GGATATCGAGATACGCATCGCCTTCAAAGGCCAGGCCAAAGCGCTCAAGC
AATTCCGCACCATGCTCGTCCCCGCGGGGAGC
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Coding sequence (CDS) from alignment at H-elongata_contig126096:1348..1479-

>mRNA_H-elongata_contig126096.1943.1 ID=mRNA_H-elongata_contig126096.1943.1|Name=mRNA_H-elongata_contig126096.1943.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=264bp|location=Sequence derived from alignment at H-elongata_contig126096:1348..1479- (Himanthalia elongata Himel1 dioecious)
CTGCAGGTACATGAGACCCCGTCAGAGGAGAGCGTGACTCTCATGGGAAA
GGATATCGAGATACGCATCGCCTTCAAAGGCCAGGCCAAAGCGCTCAAGC
AATTCCGCACCATGCTCGTCCCCGCGGGGAGCCTGCAGGTACATGAGACC
CCGTCAGAGGAGAGCGTGACTCTCATGGGAAAGGATATCGAGATACGCAT
CGCCTTCAAAGGCCAGGCCAAAGCGCTCAAGCAATTCCGCACCATGCTCG
TCCCCGCGGGGAGC
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