mRNA_H-elongata_contig12609.1942.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig12609.1942.1
Unique NamemRNA_H-elongata_contig12609.1942.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig12609.1942.1 vs. uniprot
Match: D7G5D6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5D6_ECTSI)

HSP 1 Score: 129 bits (324), Expect = 4.700e-32
Identity = 60/105 (57.14%), Postives = 79/105 (75.24%), Query Frame = 2 
Query:    2 EPDGTVVSYKNPLGSVGFLENDDTEGFGPESYVILSDLDPDSTSILGEYKAQARVYLG--STESWNLTARMFGEIVWVEEGDFTTSTTTSRFSVSLTDYDPNCGG 310
            EP G VV + N  G VGFL+NDDT GFGPE+Y+I S LDP ++ +LGEY+   ++Y G  +TE+W LTAR+ GE+VW+EEGDF +ST +  F+VSL+ YDP CGG
Sbjct:  334 EPGGEVVYFSNRGGDVGFLDNDDTYGFGPENYIIDSALDPAASQVLGEYETYVKLYSGDAATETWRLTARVSGEVVWIEEGDFISSTQSDTFAVSLSVYDPTCGG 438
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BLAST of mRNA_H-elongata_contig12609.1942.1 vs. uniprot
Match: D7G3X5_ECTSI (VWFD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3X5_ECTSI)

HSP 1 Score: 129 bits (324), Expect = 1.710e-31
Identity = 60/105 (57.14%), Postives = 79/105 (75.24%), Query Frame = 2 
Query:    2 EPDGTVVSYKNPLGSVGFLENDDTEGFGPESYVILSDLDPDSTSILGEYKAQARVYLG--STESWNLTARMFGEIVWVEEGDFTTSTTTSRFSVSLTDYDPNCGG 310
            EP G VV + N  G VGFL+NDDT GFGPE+Y+I S LDP ++ +LGEY+   ++Y G  +TE+W LTAR+ GE+VW+EEGDF +ST +  F+VSL+ YDP CGG
Sbjct:  460 EPGGEVVYFSNRGGDVGFLDNDDTYGFGPENYIIDSALDPAASQVLGEYETYVKLYSGDAATETWRLTARVSGEVVWIEEGDFISSTQSDTFAVSLSVYDPTCGG 564
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12609.1942.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G5D6_ECTSI4.700e-3257.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G3X5_ECTSI1.710e-3157.14VWFD domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12609contigH-elongata_contig12609:4479..5299 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size586
Cds size132
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12609.1942.1prot_H-elongata_contig12609.1942.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig12609 4919..5050 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929746.5480711-UTR-H-elongata_contig12609:4478..45211622929746.5480711-UTR-H-elongata_contig12609:4478..4521Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12609 4479..4521 +
1691679141.6018083-UTR-H-elongata_contig12609:4478..45211691679141.6018083-UTR-H-elongata_contig12609:4478..4521Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12609 4479..4521 +
1622929746.5807037-UTR-H-elongata_contig12609:4756..49181622929746.5807037-UTR-H-elongata_contig12609:4756..4918Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12609 4757..4918 +
1691679141.61522-UTR-H-elongata_contig12609:4756..49181691679141.61522-UTR-H-elongata_contig12609:4756..4918Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12609 4757..4918 +
1622929746.6305056-UTR-H-elongata_contig12609:5050..52991622929746.6305056-UTR-H-elongata_contig12609:5050..5299Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12609 5051..5299 +
1691679141.633281-UTR-H-elongata_contig12609:5050..52991691679141.633281-UTR-H-elongata_contig12609:5050..5299Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12609 5051..5299 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929746.5953538-CDS-H-elongata_contig12609:4918..50501622929746.5953538-CDS-H-elongata_contig12609:4918..5050Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12609 4919..5050 +
1691679141.6249976-CDS-H-elongata_contig12609:4918..50501691679141.6249976-CDS-H-elongata_contig12609:4918..5050Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12609 4919..5050 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig12609.1942.1

>prot_H-elongata_contig12609.1942.1 ID=prot_H-elongata_contig12609.1942.1|Name=mRNA_H-elongata_contig12609.1942.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=44bp
MFGEIVWVEEGDFTTSTTTSRFSVSLTDYDPNCGGSFAATITT*
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mRNA from alignment at H-elongata_contig12609:4479..5299+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig12609.1942.1 ID=mRNA_H-elongata_contig12609.1942.1|Name=mRNA_H-elongata_contig12609.1942.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=821bp|location=Sequence derived from alignment at H-elongata_contig12609:4479..5299+ (Himanthalia elongata Himel1 dioecious)
TGAACCTGATGGCACGGTCGTCAGCTACAAAAATCCCTTGGGGGTAAGTA
AAACTTGCACTGCGCCAGGTGAAGGTGTTCAGCTTTTGGCAGTGAATATG
ACCACCGTTTGGGCTGTCGACACAATAGGTTATTATATATTTGGAACAGG
TAACGCGGGGATGGAGAACCTCGGCGTACTTAAGATCCTCAACCAAATGT
CACAATATTGATACGGACACCCAACTCCTGTCTCGGTTTGTCGTGAAACG
CCCTATATATAAATCGCGCTACCACAAGAGTGTTGGCTTCCTCGAAAACG
ATGACACGGAGGGTTTCGGTCCAGAAAGCTACGTCATCTTAAGCGACCTT
GACCCTGACAGTACCTCGATACTCGGGGAGTACAAGGCCCAAGCACGAGT
CTACCTTGGCTCAACAGAGTCGTGGAACCTCACCGCTCGTATGTTTGGAG
AAATCGTGTGGGTCGAGGAGGGTGACTTTACGACTTCAACGACGACATCG
CGTTTCAGCGTGTCTCTCACCGACTACGATCCCAACTGTGGAGGTAGCTT
TGCCGCTACCATCACCACCTAGGACGTTTCAACGGGAACTTTGGCACGCA
GCTAATGGGTATATAACGGGTTTTAGCCTGAACATTGCAATATGTATGAT
ACGCATGCGGAAGAGGCGTTCTTGCTATTAATACATTTGAAATGTACAAA
ACGGGTAATGAGGGGTATCCCGACCATCAGCATGATGCTTTAAAGAGGTT
TATGATGATTTCATTCCACTGGAAGTAAAGGTGAAGGAACTACTCCGTTG
TCGAGAAGAGGTGGCGCCCAC
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Coding sequence (CDS) from alignment at H-elongata_contig12609:4479..5299+

>mRNA_H-elongata_contig12609.1942.1 ID=mRNA_H-elongata_contig12609.1942.1|Name=mRNA_H-elongata_contig12609.1942.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=264bp|location=Sequence derived from alignment at H-elongata_contig12609:4479..5299+ (Himanthalia elongata Himel1 dioecious)
ATGTTTGGAGAAATCGTGTGGGTCGAGGAGGGTGACTTTACGACTTCAAC
GACGACATCGCGTTTCAGCGTGTCTCTCACCGACTACGATCCCAACTGTG
GAGGTAGCTTTGCCGCTACCATCACCACCTAGATGTTTGGAGAAATCGTG
TGGGTCGAGGAGGGTGACTTTACGACTTCAACGACGACATCGCGTTTCAG
CGTGTCTCTCACCGACTACGATCCCAACTGTGGAGGTAGCTTTGCCGCTA
CCATCACCACCTAG
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