mRNA_H-elongata_contig12593.1933.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig12593.1933.1 vs. uniprot
Match: D8LBH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBH1_ECTSI) HSP 1 Score: 323 bits (829), Expect = 6.530e-101 Identity = 206/416 (49.52%), Postives = 269/416 (64.66%), Query Frame = 1
Query: 508 SKWVVMSAEQVEHAAKKLRGETDKNKTLQAKLEKHKHDRVLIYDAAMKQATEREEEGVKEVKRTFEREKIVMRAEVDQEVVKVNDLYEKRCRDYAQMVSDECEEEISTASAELRKDWARQKKTIAQLVREGAGKDRQASVAVIARAVMEHLLEEKMDEAAAMRTDIYTEVQMEFENRERTLRDALQSEFRADLDGQLLLAEIRHQKEIDNLRIELRGDHAPPTGVAGEAIVLFNRGCRECEGLGPRPKSLDSITKNSRHRQHRQKKPFRSEAAGNWGNDSGVSRAATVGGKSGLVKKLPIFRTPSQKASTSDLKKTSIKPT------SQRRPRIKSPSWSPKTGNLSSTFPEPLDCVFQHEDEEFDGNITSALTVSPTKAPGIVVTPSISIENVLVEEAASPVPQRPKKRGKRLFT 1737
SKW+++S EQVE A+K+R + +KNK L+ ++ HK +RVLIYDAAMKQA +RE EGV EVK+ ER++ +MRAEVDQE+ K++DLY++RCRDYA MVSDEC+ E S A+ +LRKDWARQKKTI QLVR G +DRQ SV IARAV+E L EE+ DE A++R IY++V+MEFE+RE LRD L+S+F+ADLDGQLLLAEIRHQKE++ LR+EL G P T IV++N +C G G R S T + + K SEA+G GV T G L +K P+F+TP QK K +++P S R+PR S + +S+T P + +++E D ITSAL VSPTKA VVTPSI E + E +S RPKKR K+LF+
Sbjct: 89 SKWMIVSKEQVEQTAEKMRDQAEKNKALETTVKIHKRERVLIYDAAMKQAAKRELEGVNEVKQVLERQQGMMRAEVDQEMQKISDLYQERCRDYATMVSDECDGEDSKAATDLRKDWARQKKTIDQLVRSGGEEDRQVSV--IARAVVEQLQEERRDEIASLRAAIYSDVKMEFESREVALRDTLESDFQADLDGQLLLAEIRHQKEMNRLRVELAGSEKPTTEAKTGEIVVYNPETPQCAGRGQRSSGTSSFTPSPSFSRRPLHKMNISEASGGNSGADGVHVPTTPRGTQ-LGRKFPVFKTPVQKQIPGASNKKAVRPKEHPVRDSTRQPRNSSVG---RHTEISTTTP------IREQEDELDVGITSALMVSPTKAIYGVVTPSIGSEGEVSGEGSS----RPKKRAKKLFS 488
BLAST of mRNA_H-elongata_contig12593.1933.1 vs. uniprot
Match: A0A6H5KNT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNT9_9PHAE) HSP 1 Score: 315 bits (806), Expect = 1.660e-96 Identity = 204/411 (49.64%), Postives = 263/411 (63.99%), Query Frame = 1
Query: 508 SKWVVMSAEQVEHAAKKLRGETDKNKTLQAKLEKHKHDRVLIYDAAMKQATEREEEGVKEVKRTFEREKIVMRAEVDQEVVKVNDLYEKRCRDYAQMVSDECEEEISTASAELRKDWARQKKTIAQLVREGAGKDRQASVAVIARAVMEHLLEEKMDEAAAMRTDIYTEVQMEFENRERTLRDALQSEFRADLDGQLLLAEIRHQKEIDNLRIELRGDHAPPTGVAGEAIVLFNRGCRECEGLGPRPKSLDSITKN-SRHRQHRQKKPFRSEAAGNWGNDSGVSRAATVGGKSGLVKKLPIFRTPSQKASTSDLKKTSIKPTSQRRPRIKSPSWSPKTGNLSSTFPEPLDCVFQHEDEEFDGNITSALTVSPTKAPGIVVTPSISIENVLVEEAASPVPQRPKKRGKRLFT 1737
SKW+++S EQVE AKK+R + +KNK L+ ++ HK +RVLIYDAAMKQA +RE EGV EVK+ ER++ +MRAEVDQE+ K++DLY++RCRDYA+MVSDEC+ E S A +LRKDWARQKKTI QLVR +DRQ S IARAV+E L EE+ DE A++R IY++V+MEFE+RE LRD L+S+F+ADLDGQLLLAEIRHQKE++ LR+EL G P T I+++N +C G G R S T + S R+H K + GN G GV T G L +K P+F+TP QK K +++P P S S + T + + +HED D ITSAL VSPTKA VVTPSI E + E +S RPKKR K+LF+
Sbjct: 169 SKWMIVSKEQVEQTAKKMRDQAEKNKALETTVKSHKRERVLIYDAAMKQAAKRELEGVDEVKQVLERQQGMMRAEVDQEMRKISDLYQERCRDYARMVSDECDGEDSKAVTDLRKDWARQKKTIDQLVRSSREEDRQVSA--IARAVVEQLQEERSDEIASLRAAIYSDVKMEFESREVALRDTLESDFQADLDGQLLLAEIRHQKEMNRLRVELAGSEKPTTEAKTSEIIVYNPETLQCAGSGQRSSGASSFTASPSFSRRHLHKMNIGEASGGNSGA-GGVHVPTTPRGTQ-LGRKFPVFKTPVQKKIPGIGNKKAVRPKGH--PVSDSTRKSRNSSAGRHTKISTITPIREHEDY-LDVGITSALMVSPTKAIHGVVTPSIGSEGGVSGEGSS----RPKKRAKKLFS 568 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12593.1933.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig12593.1933.1 >prot_H-elongata_contig12593.1933.1 ID=prot_H-elongata_contig12593.1933.1|Name=mRNA_H-elongata_contig12593.1933.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=583bp QQYDWRLEVTDQRPKFGSSELEGKHPFDDRNDKGNGSSQVRPTAANLHDLback to top mRNA from alignment at H-elongata_contig12593:2404..5151- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig12593.1933.1 ID=mRNA_H-elongata_contig12593.1933.1|Name=mRNA_H-elongata_contig12593.1933.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2748bp|location=Sequence derived from alignment at H-elongata_contig12593:2404..5151- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig12593:2404..5151- >mRNA_H-elongata_contig12593.1933.1 ID=mRNA_H-elongata_contig12593.1933.1|Name=mRNA_H-elongata_contig12593.1933.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3498bp|location=Sequence derived from alignment at H-elongata_contig12593:2404..5151- (Himanthalia elongata Himel1 dioecious)back to top |