mRNA_H-elongata_contig125895.1929.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig125895.1929.1
Unique NamemRNA_H-elongata_contig125895.1929.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig125895.1929.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig125895contigH-elongata_contig125895:588..1221 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size507
Cds size318
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig125895.1929.1prot_H-elongata_contig125895.1929.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig125895 777..1221 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929744.7853522-UTR-H-elongata_contig125895:587..7761622929744.7853522-UTR-H-elongata_contig125895:587..776Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig125895 588..776 +
1691679140.8337827-UTR-H-elongata_contig125895:587..7761691679140.8337827-UTR-H-elongata_contig125895:587..776Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig125895 588..776 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929744.8043063-CDS-H-elongata_contig125895:776..9221622929744.8043063-CDS-H-elongata_contig125895:776..922Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig125895 777..922 +
1691679140.8428988-CDS-H-elongata_contig125895:776..9221691679140.8428988-CDS-H-elongata_contig125895:776..922Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig125895 777..922 +
1622929744.8176825-CDS-H-elongata_contig125895:1049..12211622929744.8176825-CDS-H-elongata_contig125895:1049..1221Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig125895 1050..1221 +
1691679140.8572934-CDS-H-elongata_contig125895:1049..12211691679140.8572934-CDS-H-elongata_contig125895:1049..1221Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig125895 1050..1221 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig125895.1929.1

>prot_H-elongata_contig125895.1929.1 ID=prot_H-elongata_contig125895.1929.1|Name=mRNA_H-elongata_contig125895.1929.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp
MCTRRPAVLSPMMAPPASASSASIEKPVMFRLVPFDTNIGRDSATSPRHG
EAEVAAVAGAYGISQPDDGEENPCCQIVSWCGGFYPEVGHKQIVRVRRLF
CSCRT*
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mRNA from alignment at H-elongata_contig125895:588..1221+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig125895.1929.1 ID=mRNA_H-elongata_contig125895.1929.1|Name=mRNA_H-elongata_contig125895.1929.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=634bp|location=Sequence derived from alignment at H-elongata_contig125895:588..1221+ (Himanthalia elongata Himel1 dioecious)
GTCAGCTGTTGTAACATCGTCCTTACTCTCAGGCAACAACATAACTAACC
TCCCGACGAAGAAGATTCTCCGTTGTTGTTGAGGAAGGTGCAGTCCTTGA
TCTCGGCGTAGGATCCTCCGTTGAACCTCAGCCCTCCGTCCCCACCTGAA
AATGTCAAGCCCGTAAATAACACGCTTGAGCCATGGTCGATGTGTACTAG
AAGACCTGCTGTGTTATCGCCGATGATGGCCCCTCCTGCGTCCGCGTCAT
CAGCGTCTATCGAGAAGCCCGTCATGTTCAGGCTCGTACCATTCGACACA
AATATAGGCCGAGATAGCGCAACATCACCACGCCAGTGGACCTTGAAACT
TCCTGCGCCTTCGCAAAGTAGGGCTTCGGCGAGCGACTCCACCTCCAACG
TGGTTCCCACGACCATCGTTTCCATGCTATTAGAGCATGGAACCGCAACT
ATAAGTACATAGCGGAGAAGCAGAAGTAGCAGCAGTAGCTGGCGCGTACG
GCATTTCACAACCTGATGATGGTGAGGAAAATCCATGTTGTCAAATCGTA
TCCTGGTGTGGAGGATTCTATCCCGAAGTGGGGCATAAACAGATTGTCCG
AGTTCGCCGACTCTTTTGCTCTTGTCGTACCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig125895:588..1221+

>mRNA_H-elongata_contig125895.1929.1 ID=mRNA_H-elongata_contig125895.1929.1|Name=mRNA_H-elongata_contig125895.1929.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at H-elongata_contig125895:588..1221+ (Himanthalia elongata Himel1 dioecious)
ATGTGTACTAGAAGACCTGCTGTGTTATCGCCGATGATGGCCCCTCCTGC
GTCCGCGTCATCAGCGTCTATCGAGAAGCCCGTCATGTTCAGGCTCGTAC
CATTCGACACAAATATAGGCCGAGATAGCGCAACATCACCACGCCAATGT
GTACTAGAAGACCTGCTGTGTTATCGCCGATGATGGCCCCTCCTGCGTCC
GCGTCATCAGCGTCTATCGAGAAGCCCGTCATGTTCAGGCTCGTACCATT
CGACACAAATATAGGCCGAGATAGCGCAACATCACCACGCCACGGAGAAG
CAGAAGTAGCAGCAGTAGCTGGCGCGTACGGCATTTCACAACCTGATGAT
GGTGAGGAAAATCCATGTTGTCAAATCGTATCCTGGTGTGGAGGATTCTA
TCCCGAAGTGGGGCATAAACAGATTGTCCGAGTTCGCCGACTCTTTTGCT
CTTGTCGTACCTGACGGAGAAGCAGAAGTAGCAGCAGTAGCTGGCGCGTA
CGGCATTTCACAACCTGATGATGGTGAGGAAAATCCATGTTGTCAAATCG
TATCCTGGTGTGGAGGATTCTATCCCGAAGTGGGGCATAAACAGATTGTC
CGAGTTCGCCGACTCTTTTGCTCTTGTCGTACCTGA
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