mRNA_H-elongata_contig125833.1924.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig125833.1924.1
Unique NamemRNA_H-elongata_contig125833.1924.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig125833.1924.1 vs. uniprot
Match: A0A6H5J883_9PHAE (GT20 protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J883_9PHAE)

HSP 1 Score: 181 bits (460), Expect = 1.050e-51
Identity = 82/86 (95.35%), Postives = 85/86 (98.84%), Query Frame = 1 
Query:    1 FATVVSSVYQDGDHVWVHDYQLMQVPYELRKMHPNCRVAWFLHTPFPSSEIYRILPVRKQLLQGLLAADLVGFHTYDYARHFLSSC 258
            FA VVSSVY+DGDHVWVHDYQLMQVPYELRK+HPNCRVAWFLHTPFPSSEIYRILPVRKQLLQGLLAADLVGFHTYDYARHFLS+C
Sbjct:   10 FANVVSSVYKDGDHVWVHDYQLMQVPYELRKLHPNCRVAWFLHTPFPSSEIYRILPVRKQLLQGLLAADLVGFHTYDYARHFLSAC 95
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BLAST of mRNA_H-elongata_contig125833.1924.1 vs. uniprot
Match: D8LRB5_ECTSI (Trehalose 6-phosphate synthase, family GT20 / Trehalose 6-phosphate phosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRB5_ECTSI)

HSP 1 Score: 170 bits (430), Expect = 3.950e-47
Identity = 76/83 (91.57%), Postives = 79/83 (95.18%), Query Frame = 1 
Query:   13 VSSVYQDGDHVWVHDYQLMQVPYELRKMHPNCRVAWFLHTPFPSSEIYRILPVRKQLLQGLLAADLVGFHTYDYARHFLSSCR 261
            V    +DGDHVWVHDYQLMQVPYELRK+HPNCRVAWFLHTPFPSSEIYRILPVRKQLLQGLLAADLVGFHTYDYARHFLS+CR
Sbjct:  219 VEEAERDGDHVWVHDYQLMQVPYELRKLHPNCRVAWFLHTPFPSSEIYRILPVRKQLLQGLLAADLVGFHTYDYARHFLSACR 301
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BLAST of mRNA_H-elongata_contig125833.1924.1 vs. uniprot
Match: K3W821_GLOUD (Alpha,alpha-trehalose-phosphate synthase (UDP-forming) n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W821_GLOUD)

HSP 1 Score: 147 bits (372), Expect = 2.730e-39
Identity = 62/93 (66.67%), Postives = 76/93 (81.72%), Query Frame = 1 
Query:    1 FATVVSSVYQDGDHVWVHDYQLMQVPYELRKMHPNCRVAWFLHTPFPSSEIYRILPVRKQLLQGLLAADLVGFHTYDYARHFLSSCRCVTGTS 279
            FA  V+ VY+DGD+VW+HDY LM +P  LRK HP C++ WFLHTPFPSSE+YR LPV KQ+L+GLL ADL+GFHTYDYARHFLS+C  + G +
Sbjct:  256 FAQAVNQVYRDGDYVWIHDYHLMNLPALLRKRHPRCKIGWFLHTPFPSSEMYRTLPVGKQILEGLLGADLLGFHTYDYARHFLSACSRIPGAT 348
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BLAST of mRNA_H-elongata_contig125833.1924.1 vs. uniprot
Match: A0A5D6Y7E3_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y7E3_9STRA)

HSP 1 Score: 147 bits (371), Expect = 3.720e-39
Identity = 64/93 (68.82%), Postives = 75/93 (80.65%), Query Frame = 1 
Query:    1 FATVVSSVYQDGDHVWVHDYQLMQVPYELRKMHPNCRVAWFLHTPFPSSEIYRILPVRKQLLQGLLAADLVGFHTYDYARHFLSSCRCVTGTS 279
            FA  V+ VY++GD+VWVHDY LM +P  LRK HP C + WFLHTPFPSSE+YR LPV KQ+LQGLL ADL+GFHTYDYARHFLS+C  + G S
Sbjct:  260 FAQAVNQVYREGDYVWVHDYHLMNLPSLLRKRHPKCTIGWFLHTPFPSSEMYRTLPVGKQILQGLLGADLLGFHTYDYARHFLSACGRIPGVS 352
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BLAST of mRNA_H-elongata_contig125833.1924.1 vs. uniprot
Match: A0A8K1CD86_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CD86_PYTOL)

HSP 1 Score: 144 bits (362), Expect = 6.150e-38
Identity = 60/93 (64.52%), Postives = 76/93 (81.72%), Query Frame = 1 
Query:    1 FATVVSSVYQDGDHVWVHDYQLMQVPYELRKMHPNCRVAWFLHTPFPSSEIYRILPVRKQLLQGLLAADLVGFHTYDYARHFLSSCRCVTGTS 279
            FA  V+ VY+DGD+VW+HDY LM +P  LRK HP C++ WFLHTPFPS+E++R LPV KQ+L+GLL ADL+GFHTYDYARHFLS+C  + G +
Sbjct:  288 FAQAVNQVYRDGDYVWIHDYHLMTLPSLLRKRHPKCKIGWFLHTPFPSAEMFRQLPVGKQILEGLLGADLLGFHTYDYARHFLSACSRIQGAT 380
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BLAST of mRNA_H-elongata_contig125833.1924.1 vs. uniprot
Match: A0A2D4C5H4_PYTIN (Alpha,alpha-trehalose-phosphate synthase (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C5H4_PYTIN)

HSP 1 Score: 143 bits (360), Expect = 1.140e-37
Identity = 59/88 (67.05%), Postives = 75/88 (85.23%), Query Frame = 1 
Query:   16 SSVYQDGDHVWVHDYQLMQVPYELRKMHPNCRVAWFLHTPFPSSEIYRILPVRKQLLQGLLAADLVGFHTYDYARHFLSSCRCVTGTS 279
            +SVY+DGD+VWVHDY LM +P  LRK HP C++ WFLHTPFPS+E+YR+LPV KQ+L+GLL ADL+GFHTYDYARHFL++C  + G +
Sbjct:  271 TSVYRDGDYVWVHDYHLMMLPSLLRKRHPRCKIGWFLHTPFPSAEMYRMLPVGKQILEGLLGADLLGFHTYDYARHFLAACSRIPGAT 358
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BLAST of mRNA_H-elongata_contig125833.1924.1 vs. uniprot
Match: H3G924_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G924_PHYRM)

HSP 1 Score: 139 bits (351), Expect = 3.190e-37
Identity = 57/93 (61.29%), Postives = 76/93 (81.72%), Query Frame = 1 
Query:    1 FATVVSSVYQDGDHVWVHDYQLMQVPYELRKMHPNCRVAWFLHTPFPSSEIYRILPVRKQLLQGLLAADLVGFHTYDYARHFLSSCRCVTGTS 279
            FA  V+ VY++GD VWVHDY LM +P  LR  HP+C++ WFLHTPFP++E+YR+LPV +++L+GLL ADL+GFHTYDYARHF+++C  V G S
Sbjct:  126 FAQAVNQVYREGDFVWVHDYHLMMLPSLLRSRHPHCKIGWFLHTPFPTAEMYRMLPVGREILEGLLGADLLGFHTYDYARHFIAACARVPGAS 218
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BLAST of mRNA_H-elongata_contig125833.1924.1 vs. uniprot
Match: A0A225VGT2_9STRA (Alpha,alpha-trehalose-phosphate synthase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VGT2_9STRA)

HSP 1 Score: 141 bits (355), Expect = 5.390e-37
Identity = 58/93 (62.37%), Postives = 75/93 (80.65%), Query Frame = 1 
Query:    1 FATVVSSVYQDGDHVWVHDYQLMQVPYELRKMHPNCRVAWFLHTPFPSSEIYRILPVRKQLLQGLLAADLVGFHTYDYARHFLSSCRCVTGTS 279
            FA  V+ VY++GD VWVHDY LM +P  LR  HPNC++ WFLHTPFP++E+YR+LPV +++L+GLL ADL+GFHTYDYARHF+ +C  V G S
Sbjct:  301 FAQAVNQVYREGDFVWVHDYHLMMLPSLLRSRHPNCKIGWFLHTPFPTAEMYRMLPVGREILEGLLGADLLGFHTYDYARHFIGACARVPGAS 393
[Close]
BLAST of mRNA_H-elongata_contig125833.1924.1 vs. uniprot
Match: A0A7S1T5F0_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1T5F0_9CHLO)

HSP 1 Score: 129 bits (324), Expect = 1.360e-36
Identity = 55/91 (60.44%), Postives = 71/91 (78.02%), Query Frame = 1 
Query:    1 FATVVSSVYQDGDHVWVHDYQLMQVPYELRKMHPNCRVAWFLHTPFPSSEIYRILPVRKQLLQGLLAADLVGFHTYDYARHFLSSCRCVTG 273
            FA V  ++YQ+GD VW  DY LM VP  L++ HP+ +V WFLHTPFPSSEIYR LP+R+++L+  L ADL+GFHTYDYARHF+S+C  + G
Sbjct:   40 FANVALNIYQEGDVVWCQDYHLMLVPDMLKEAHPSMKVGWFLHTPFPSSEIYRTLPLREEILKATLRADLIGFHTYDYARHFVSACTRILG 130
[Close]
BLAST of mRNA_H-elongata_contig125833.1924.1 vs. uniprot
Match: D0NRZ0_PHYIT (Alpha,alpha-trehalose-phosphate synthase (UDP-forming) n=3 Tax=Phytophthora TaxID=4783 RepID=D0NRZ0_PHYIT)

HSP 1 Score: 139 bits (350), Expect = 2.550e-36
Identity = 58/93 (62.37%), Postives = 75/93 (80.65%), Query Frame = 1 
Query:    1 FATVVSSVYQDGDHVWVHDYQLMQVPYELRKMHPNCRVAWFLHTPFPSSEIYRILPVRKQLLQGLLAADLVGFHTYDYARHFLSSCRCVTGTS 279
            FA  V+ VY++GD VWVHDY LM +P  LR  HP C+V WFLHTPFP++E+YR+LPV +++L+GLL ADL+GFHTYDYARHF+++C  V G S
Sbjct:  311 FAQAVNQVYREGDFVWVHDYHLMMLPSLLRARHPQCKVGWFLHTPFPTAEMYRMLPVGREILEGLLGADLLGFHTYDYARHFIAACARVPGAS 403
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig125833.1924.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J883_9PHAE1.050e-5195.35GT20 protein (Fragment) n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRB5_ECTSI3.950e-4791.57Trehalose 6-phosphate synthase, family GT20 / Treh... [more]
K3W821_GLOUD2.730e-3966.67Alpha,alpha-trehalose-phosphate synthase (UDP-form... [more]
A0A5D6Y7E3_9STRA3.720e-3968.82Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A8K1CD86_PYTOL6.150e-3864.52Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4C5H4_PYTIN1.140e-3767.05Alpha,alpha-trehalose-phosphate synthase (Fragment... [more]
H3G924_PHYRM3.190e-3761.29Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A225VGT2_9STRA5.390e-3762.37Alpha,alpha-trehalose-phosphate synthase n=1 Tax=P... [more]
A0A7S1T5F0_9CHLO1.360e-3660.44Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]
D0NRZ0_PHYIT2.550e-3662.37Alpha,alpha-trehalose-phosphate synthase (UDP-form... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig125833contigH-elongata_contig125833:884..1598 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score150.6
Seed ortholog evalue3.6e-34
Seed eggNOG ortholog36331.EPrPI00000021887
Preferred nameTPS2
KEGG rclassRC00005,RC00017,RC00049,RC02748
KEGG koko:K16055
KEGG ReactionR02737,R02778
KEGG Pathwayko00500,ko01100,map00500,map01100
GOsGO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0003825,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005975,GO:0005984,GO:0005991,GO:0005992,GO:0006793,GO:0006796,GO:0006950,GO:0007154,GO:0007165,GO:0007275,GO:0008150,GO:0008152,GO:0008194,GO:0009058,GO:0009311,GO:0009312,GO:0009743,GO:0009756,GO:0009790,GO:0009791,GO:0009793,GO:0009832,GO:0009987,GO:0010033,GO:0010154,GO:0010182,GO:0016051,GO:0016311,GO:0016740,GO:0016757,GO:0016758,GO:0016787,GO:0016788,GO:0016791,GO:0022414,GO:0023052,GO:0032501,GO:0032502,GO:0033554,GO:0034637,GO:0035251,GO:0042221,GO:0042546,GO:0042578,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044262,GO:0044424,GO:0044464,GO:0046351,GO:0046527,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051301,GO:0051716,GO:0061458,GO:0065007,GO:0070413,GO:0070887,GO:0071310,GO:0071322,GO:0071554,GO:0071669,GO:0071704,GO:0071840,GO:1901576,GO:1901700,GO:1901701
EggNOG free text desc.Alpha,alpha-trehalose-phosphate synthase. Source PGD
EggNOG OGs1MFGW@121069,COG1877@1,KOG1050@2759
EC2.4.1.15,3.1.3.12
COG Functional cat.G
CAZyGT20
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003
Hectar predicted targeting categoryother localisation
Exons2
Model size279
Cds size279
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929744.319677-CDS-H-elongata_contig125833:883..9731622929744.319677-CDS-H-elongata_contig125833:883..973Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig125833 884..973 -
1691679140.6366887-CDS-H-elongata_contig125833:883..9731691679140.6366887-CDS-H-elongata_contig125833:883..973Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig125833 884..973 -
1622929744.3352332-CDS-H-elongata_contig125833:1409..15981622929744.3352332-CDS-H-elongata_contig125833:1409..1598Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig125833 1410..1598 -
1691679140.650149-CDS-H-elongata_contig125833:1409..15981691679140.650149-CDS-H-elongata_contig125833:1409..1598Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig125833 1410..1598 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig125833.1924.1prot_H-elongata_contig125833.1924.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig125833 884..1598 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig125833.1924.1

>prot_H-elongata_contig125833.1924.1 ID=prot_H-elongata_contig125833.1924.1|Name=mRNA_H-elongata_contig125833.1924.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=93bp
FATVVSSVYQDGDHVWVHDYQLMQVPYELRKMHPNCRVAWFLHTPFPSSE
IYRILPVRKQLLQGLLAADLVGFHTYDYARHFLSSCRCVTGTS
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mRNA from alignment at H-elongata_contig125833:884..1598-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig125833.1924.1 ID=mRNA_H-elongata_contig125833.1924.1|Name=mRNA_H-elongata_contig125833.1924.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=715bp|location=Sequence derived from alignment at H-elongata_contig125833:884..1598- (Himanthalia elongata Himel1 dioecious)
TTCGCGACCGTCGTTTCCTCTGTGTATCAAGACGGGGATCACGTGTGGGT
TCACGACTACCAGCTGATGCAGGTCCCCTATGAACTTCGGAAGATGCACC
CCAACTGTCGTGTGGCCTGGTTCCTGCACACGCCCTTCCCATCTTCGGAA
ATATATCGTATTTTGCCGGTCAGGAAGCAGCTGCTGCAGGTGCGGTGGCG
ACGTTCCTCGCGCAGGAGGCAACGTTCGGGAGTTGCGGGGGGACGTGTTT
ATTTTTTAATGGTTCGTTGTACGTATCGAGGAAAGGTTGGGAGGGGGGGA
TGTTTTGATGTCGCATCGATTGGTGGCAGTTACGCGAAGATAATTTGTTT
CTGGGTTTCTTATCTCGATGTGGCATTTATGTCGCTTCGTCCGCGACGGC
GGCGGCCGGCCGGCAGGAAGTCGAGCGAGAGCGCTTGTTGCTTTTTGAGT
GAAACAAGCAACCCCCCTCCATCCAAATACCAGGATACAACTATAGCAGC
GGTGGTGATTCGTAGTGGTAGTACTTCGTAGTGGTAAAACACAGACGAAA
GCAGTTGGGGGTTGCGTCCCCTCTCTGTAAGTATAACAACACTTGTATAC
TTGTCTTGTATTTTGGCGCGTGCAGGGGCTCTTGGCGGCCGATCTGGTAG
GCTTCCACACATACGACTACGCGAGGCATTTCCTCTCTTCCTGCAGGTGT
GTTACGGGAACCAGC
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Coding sequence (CDS) from alignment at H-elongata_contig125833:884..1598-

>mRNA_H-elongata_contig125833.1924.1 ID=mRNA_H-elongata_contig125833.1924.1|Name=mRNA_H-elongata_contig125833.1924.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=558bp|location=Sequence derived from alignment at H-elongata_contig125833:884..1598- (Himanthalia elongata Himel1 dioecious)
TTCGCGACCGTCGTTTCCTCTGTGTATCAAGACGGGGATCACGTGTGGGT
TCACGACTACCAGCTGATGCAGGTCCCCTATGAACTTCGGAAGATGCACC
CCAACTGTCGTGTGGCCTGGTTCCTGCACACGCCCTTCCCATCTTCGGAA
ATATATCGTATTTTGCCGGTCAGGAAGCAGCTGCTGCAGTTCGCGACCGT
CGTTTCCTCTGTGTATCAAGACGGGGATCACGTGTGGGTTCACGACTACC
AGCTGATGCAGGTCCCCTATGAACTTCGGAAGATGCACCCCAACTGTCGT
GTGGCCTGGTTCCTGCACACGCCCTTCCCATCTTCGGAAATATATCGTAT
TTTGCCGGTCAGGAAGCAGCTGCTGCAGGGGCTCTTGGCGGCCGATCTGG
TAGGCTTCCACACATACGACTACGCGAGGCATTTCCTCTCTTCCTGCAGG
TGTGTTACGGGAACCAGCGGGCTCTTGGCGGCCGATCTGGTAGGCTTCCA
CACATACGACTACGCGAGGCATTTCCTCTCTTCCTGCAGGTGTGTTACGG
GAACCAGC
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