mRNA_H-elongata_contig125804.1923.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig125804.1923.1
Unique NamemRNA_H-elongata_contig125804.1923.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig125804.1923.1 vs. uniprot
Match: D7G521_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G521_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 3.570e-20
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 1 
Query:    1 SLTDVSGLKGEAKKQFKNLLGYCGDRKYQYPDPLIHDIVAKG 126
            SLTDVSGLKGEAKKQFKN+LGYCGDRKYQYPDPLI DIVAKG
Sbjct:   61 SLTDVSGLKGEAKKQFKNMLGYCGDRKYQYPDPLIRDIVAKG 102
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BLAST of mRNA_H-elongata_contig125804.1923.1 vs. uniprot
Match: A0A6H5KSK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSK5_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 6.100e-20
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 1 
Query:    1 SLTDVSGLKGEAKKQFKNLLGYCGDRKYQYPDPLIHDIVAKG 126
            SLTDVSGLKGEAKKQFKN+LGYCGDRKYQYPDPLI DIVAKG
Sbjct: 1054 SLTDVSGLKGEAKKQFKNMLGYCGDRKYQYPDPLIRDIVAKG 1095
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BLAST of mRNA_H-elongata_contig125804.1923.1 vs. uniprot
Match: A0A836C908_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C908_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 2.020e-16
Identity = 36/42 (85.71%), Postives = 38/42 (90.48%), Query Frame = 1 
Query:    1 SLTDVSGLKGEAKKQFKNLLGYCGDRKYQYPDPLIHDIVAKG 126
            SL  VSGLKGEA KQFKNLLGY GDRKYQYPDPL+H+IVAKG
Sbjct: 1166 SLLRVSGLKGEALKQFKNLLGYAGDRKYQYPDPLLHEIVAKG 1207
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig125804.1923.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G521_ECTSI3.570e-2095.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KSK5_9PHAE6.100e-2095.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836C908_9STRA2.020e-1685.71P-loop containing nucleoside triphosphate hydrolas... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig125804contigH-elongata_contig125804:1447..1578 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionMyTH4 domain
Ec32 orthologEc-00_008190.1
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size132
Cds size132
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929744.2652876-CDS-H-elongata_contig125804:1446..15781622929744.2652876-CDS-H-elongata_contig125804:1446..1578Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig125804 1447..1578 +
1691679140.6227424-CDS-H-elongata_contig125804:1446..15781691679140.6227424-CDS-H-elongata_contig125804:1446..1578Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig125804 1447..1578 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig125804.1923.1prot_H-elongata_contig125804.1923.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig125804 1447..1578 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig125804.1923.1

>prot_H-elongata_contig125804.1923.1 ID=prot_H-elongata_contig125804.1923.1|Name=mRNA_H-elongata_contig125804.1923.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=44bp
SLTDVSGLKGEAKKQFKNLLGYCGDRKYQYPDPLIHDIVAKGE*
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mRNA from alignment at H-elongata_contig125804:1447..1578+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig125804.1923.1 ID=mRNA_H-elongata_contig125804.1923.1|Name=mRNA_H-elongata_contig125804.1923.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=132bp|location=Sequence derived from alignment at H-elongata_contig125804:1447..1578+ (Himanthalia elongata Himel1 dioecious)
TCGCTAACGGACGTTTCGGGGCTGAAAGGGGAGGCGAAGAAACAGTTCAA
GAATCTTCTCGGATACTGCGGGGACAGGAAGTACCAGTACCCGGACCCTC
TGATTCACGATATAGTCGCGAAGGGTGAGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig125804:1447..1578+

>mRNA_H-elongata_contig125804.1923.1 ID=mRNA_H-elongata_contig125804.1923.1|Name=mRNA_H-elongata_contig125804.1923.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=264bp|location=Sequence derived from alignment at H-elongata_contig125804:1447..1578+ (Himanthalia elongata Himel1 dioecious)
TCGCTAACGGACGTTTCGGGGCTGAAAGGGGAGGCGAAGAAACAGTTCAA
GAATCTTCTCGGATACTGCGGGGACAGGAAGTACCAGTACCCGGACCCTC
TGATTCACGATATAGTCGCGAAGGGTGAGTGATCGCTAACGGACGTTTCG
GGGCTGAAAGGGGAGGCGAAGAAACAGTTCAAGAATCTTCTCGGATACTG
CGGGGACAGGAAGTACCAGTACCCGGACCCTCTGATTCACGATATAGTCG
CGAAGGGTGAGTGA
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