mRNA_H-elongata_contig125743.1921.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig125743.1921.1 vs. uniprot
Match: A0A6G0N8R7_9STRA (Integrase catalytic domain-containing protein n=3 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0N8R7_9STRA) HSP 1 Score: 183 bits (464), Expect = 3.490e-48 Identity = 117/337 (34.72%), Postives = 164/337 (48.66%), Query Frame = 1
Query: 13 PTTMGEAQASSEWPQWKRAIAREMDGQTARGVWQVVERPKGKTVLGTRVVFKRKIDNDGRIKKYKCRL-------------------LDVDMAYLEAEMEEGIYVELPEAYRDSRKQVGLLKKAMYGLVHAGLLWQKKFGIELEAKGFQRSQVDPCVF-RVILHGIVVXXXXXXVDDMLVASATKRDEEQAVMDLCSCFPVKDMGEASYYLGCHTTQDRNAGTPKFDQHQYIQTVKERFG---VTKTSIPSAAGRKALSKSDSPQTDAEVEERRQIPYRKIVEALMWAGTMTRPDISFAAHQQAKFNDNPGPTHWKAAQKALQYLWHTRDLGITYGG 954
PTT +A AS + QW+ A+ E+ G W +V R +G R VF +K D GR+ +YK RL LD D A+L +E+++ +Y+E+P ++R L KA+YGL A W K GF+ D CV+ + +G + VDDM++A+ T + L + F +K++G A + LG D AGT K +YI V E FG P AAG K LSK+ SP TDAE R PYR ++ L++ T TRPDI+F Q ++F +NP HW AA + L+YL T GI Y G
Sbjct: 504 PTTHAQAMASDDAEQWREAMDAELLSHERNGTWTLVPRGTASRTIGCRWVFAKKRDQYGRVVRYKARLVAKGFKQKYGIDFFETYSPLDADTAFLNSELKDRVYMEVPFGIENARGYQYQLNKAIYGLKQAASAWNKTIHRVFLGNGFKSCGADQCVYVKRSKNGFIYVCLY--VDDMIIAAKTSEEIRDVKDALKNAFKMKELGPAKFILGMEIDHDMTAGTLKIKPTRYIDDVVEHFGQENAKPVDNPCAAGLK-LSKTQSPGTDAEQNAMRSKPYRSLIGCLLYITTCTRPDIAFVVTQLSRFLENPEKQHWNAAVRVLRYLKSTLQHGIIYHG 837
BLAST of mRNA_H-elongata_contig125743.1921.1 vs. uniprot
Match: A0A1M2V3W8_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2V3W8_TRAPU) HSP 1 Score: 178 bits (451), Expect = 1.530e-46 Identity = 116/360 (32.22%), Postives = 174/360 (48.33%), Query Frame = 1
Query: 10 EPTTMGEAQASSEWPQWKRAIAREMDGQTARGVWQVVERPKGKTVLGTRVVFKRKIDNDGRIKKYKCRLL------------------------------------------DVDMAYLEAEMEEGIYVELPEAYRDSRKQVGLLKKAMYGLVHAGLLWQKKFGIELEAK-GFQRSQVDPCVF-RVILHGIVVXXXXXXVDDMLVASATKRDEEQAVMDLCSCFPVKDMGEASYYLGCHTTQDRNAGTPKFDQHQYIQTVKERFGVTKTSIPSAAGRKALSKSDSPQTDAEVEERRQIPYRKIVEALMWAGTMTRPDISFAAHQQAKFNDNPGPTHWKAAQKALQYLWHTRDLGITYGGE 957
EP T+ EAQA+ EWP+WKRA+ E+ G + + P G+ +G R V++ K D+DGRI +YK RL+ DV AYL A+++E IY+ P Y + + L+KA+YGL AG W L A GFQR DPCV+ + G+ + VDDM + T + L + + D+G LG ++DR T Q QYIQTV +RF + + + + P+ DA++ E + +PY+ ++ +LM+A TRPDIS+A ++++ PG THW AA++ L+YL T+D GI Y G+
Sbjct: 14 EPRTLSEAQAAPEWPEWKRAMDDEIAQLRKLGTYAPADLPAGRKPIGCRWVYRLKRDSDGRIVRYKARLVAQGFSQAPGLDYFETFAPVIRTDSLRLLLAIAAERNMELAQFDVVGAYLNADLDEEIYMRQPPGYEEGSSPIVRLRKALYGLKQAGXQWNHHINKVLTADLGFQRLNSDPCVYLKKSPKGLTIVGMH--VDDMAALADTPDLMDTLRSGLARHYKITDLGTPRLLLGFEISRDRKKRTLSIKQSQYIQTVLDRFKMADCNPVTTPLDPNVKLCKEPE-DADLSEMKGVPYQALIGSLMYAALGTRPDISYAVQALSQYSARPGITHWTAAKRVLRYLKGTQDFGILYSGK 370
BLAST of mRNA_H-elongata_contig125743.1921.1 vs. uniprot
Match: A0A401GQU1_9APHY (Uncharacterized protein n=3 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GQU1_9APHY) HSP 1 Score: 171 bits (433), Expect = 5.740e-44 Identity = 120/366 (32.79%), Postives = 174/366 (47.54%), Query Frame = 1
Query: 10 EPTTMGEAQASSEWPQWKRAIAREMDGQTARGVWQVVERPKGKTVLGTRVVFKRKIDNDGRIKKYKCRL------------------------------------------LDVDMAYLEAEMEEGIYVELP--EAYRDSRKQVGLLKKAMYGLVHAGLLWQKKFGIELEAKGFQRSQVDPCVFRVILHG-IVVXXXXXXVDDMLVASATKRDEEQAVM----DLCSCFPVKDMGEASYYLGCHTTQDRNAGTPKFDQHQYIQTVKERFGVTKT---SIPSAAGRKALSKSDSPQTDAEVEERRQIPYRKIVEALMWAGTMTRPDISFAAHQQAKFNDNPGPTHWKAAQKALQYLWHTRDLGITYG 951
EP ++ EA S +WPQW++AI +EM + +VE P+ V+G++ VF+ K + +G+I+ YK RL +DV AYL A++EE I+++ P +A R V LL+ A+YGL +G W KK L+ G RS VD CVF + V VDD +A AV+ ++ F + D+GE + LG +DR A T Q YI + RF + S P G LS P T E E+ R +PYR+ + +LM+A TRPDI+FA ++F NPG HW+AA++ L+YL TR+ +TYG
Sbjct: 959 EPRSLEEAMQSPDWPQWQKAIEKEMRNLRDHHTYDLVEPPENTNVVGSKFVFRIKRNANGKIESYKARLVAQGFSQIPGIDFNDTFAPVAKLASIRIILALAARHDWDVHQMDVKGAYLNADLEEEIFMKQPPGQAKRGKEHWVCLLRHAIYGLKQSGRQWFKKMCAALDEMGLSRSLVDHCVFYLDEDDDSVTLIIALSVDDTTIAGTNN-----AVLWFKTEISKRFEMTDLGEMHWILGIEVRRDRAARTLSLSQRAYIDGLMARFNLEDAKPLSTPLEPGA-ILSIRQCPSTPREFEDMRNVPYREAIGSLMYAALGTRPDIAFAVTALSQFMQNPGRAHWEAAKRVLRYLKSTREKWLTYG 1318
BLAST of mRNA_H-elongata_contig125743.1921.1 vs. uniprot
Match: Q572I3_PHYIN (Putative polyprotein n=1 Tax=Phytophthora infestans TaxID=4787 RepID=Q572I3_PHYIN) HSP 1 Score: 169 bits (427), Expect = 3.540e-43 Identity = 116/357 (32.49%), Postives = 164/357 (45.94%), Query Frame = 1
Query: 13 PTTMGEAQASSEWPQWKRAIAREMDGQTARGVWQVVERPKGKTVLGTRVVFKRKIDNDGRIKKYKCRL------------------------------------------LDVDMAYLEAEMEEGIYVELPEAYRDSRKQVGLLKKAMYGLVHAGLLWQKKFGIELEAKGFQRSQVDPCVFRVILHGIVVXXXXXXVDDMLVASATKRDEEQAVMDLCSCFPVKDMGEASYYLGCHTTQDRNAGTPKFDQHQYIQTVKERFGVTKTSI---PSAAGRKALSKSDSPQTDAEVEERRQIPYRKIVEALMWAGTMTRPDISFAAHQQAKFNDNPGPTHWKAAQKALQYLWHTRDLGITY 948
P T EA AS+E +W+RA+ E++ + G W +V R +G R VF +K D +GR+ +YK RL LD D A+L + + +Y+++P ++ L KA+YGL A W K GF+ D CV+ V VDDM++A+ T+ + + L S F +K++GEA + LG DR GT Q +YI + ERF + P AA K LSK SP T+ E E PYR ++ LM+ T TRPDI++ Q A+F ++PG HWKAA + LQYL TR GI Y
Sbjct: 827 PNTYAEAIASNEAGEWRRAMQSELNSHSRNGTWTLVPRGTTTRSIGCRWVFTKKRDENGRVIRYKARLVAQGFKQKFGIDFFETYSPVANMNSIRAVLAVCVTCGYIMEQLDADTAFLNSCLVNLVYMDVPLGLENAEGMKCNLLKAIYGLKQAASAWNKTIHRVFLQNGFKCCGADQCVYVKRSKNAFVYVCLY-VDDMIIAAKTRDEIREVKNALKSAFKMKELGEAKFILGMEIDHDRECGTLMIKQTRYIDDIVERFNQRNAKMVEYPCAANLK-LSKMMSPTTEKERAEMWSRPYRSLIGCLMYITTCTRPDIAYVVTQLARFLEDPGTQHWKAAIRVLQYLKSTRHHGIVY 1181
BLAST of mRNA_H-elongata_contig125743.1921.1 vs. uniprot
Match: A0A6G0MA39_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0MA39_9STRA) HSP 1 Score: 159 bits (402), Expect = 4.520e-43 Identity = 96/256 (37.50%), Postives = 134/256 (52.34%), Query Frame = 1
Query: 199 KYKCRLLDVDMAYLEAEMEEGIYVELPEAYRDSRKQVGLLKKAMYGLVHAGLLWQKKFGIELEAKGFQRSQVDPCVF-RVILHGIVVXXXXXXVDDMLVASATKRDEEQAVMDLCSCFPVKDMGEASYYLGCHTTQDRNAGTPKFDQHQYIQTVKERFG---VTKTSIPSAAGRKALSKSDSPQTDAEVEERRQIPYRKIVEALMWAGTMTRPDISFAAHQQAKFNDNPGPTHWKAAQKALQYLWHTRDLGITYGG 954
+Y+ LD D A+L +E+++ +Y+E+P ++R L KA+YGL+ A W K GF+ D CV+ + +G + VDDM++A T D + L + F +K++G A L D AGT K Q +YI V ERFG P AAG K LSK+ SP TDAE R PYR ++ L++ T TRPDI+F A Q ++F +NPG HW AA + L+YL R GI Y G
Sbjct: 15 EYRMEQLDADTAFLNSELKDRVYMEVPFGIENARDYQYQLNKAIYGLMQAASAWNKTIHRVFLGNGFKSCGADQCVYVKRSKNGFIYVCLY--VDDMIIAVKTSEDIREVKDALKNAFKMKELGPAKSILAMEIDHDMTAGTLKIKQTRYIDDVVERFGQENAKPVDDPCAAGLK-LSKTQSPGTDAEQNAMRSKPYRSLIGCLLYITTCTRPDIAFMATQLSRFLENPGQQHWNAAVRVLRYLKAARQHGIIYQG 267
BLAST of mRNA_H-elongata_contig125743.1921.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE) HSP 1 Score: 167 bits (422), Expect = 1.650e-42 Identity = 114/360 (31.67%), Postives = 178/360 (49.44%), Query Frame = 1
Query: 1 LDPEPTTMGEAQASSEWPQWKRAIAREMDGQTARGVWQV-VERPKGKTVLGTRVVFKRKIDNDGRIKKYKCRLL------------------------------------------DVDMAYLEAEMEEGIYVELPEAYRDSRKQVGLLKKAMYGLVHAGLLWQKKFGIELEAKGFQRSQVDPCVFRVILHGIVVXXXXXXVDDMLVASATKRDEEQAVMDLCSCFPVKDMGEASYYLGCHTTQDRNAGTPKFDQHQYIQTVKERFGVTKTS-IPSAAGRKALSKSDSPQTDAEVEERRQIPYRKIVEALMWAGTMTRPDISFAAHQQAKFNDNPGPTHWKAAQKALQYLWHTRDLGITY 948
++ EP + EAQ S W+ A + E++G G + + V+ P G V+ R VFK K D G+I K K RL+ D++ A++++E++ +++++P ++V L K++YGL A + K+ EL+ GF++S DPCV R ++ VV VDD+L A TK E V L P K++GE ++LGC +DR AGT + Q YI++V ERF + +TS IP++ L+ D ++ E E +P+R++V +LMW + TR DIS A A+ + P +HWKAAQK L YL T L + +
Sbjct: 885 VESEPGSYEEAQRSKYAKIWEGARSAEVEGLMRAGTFTLAVKVPIGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASFRLVVALACKYNLELLHWDIEQAFVQSELDHEVFMKMPPGCGSMSEKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILYAG-TKSLAEVVVAALGDSLPTKNLGEVKFFLGCEYIRDRKAGTIEISQESYIRSVLERFNIVRTSSIPAS-----LNNDD--RSLMEEEGAGDVPFREVVGSLMWIASQTRADISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKF 1236
BLAST of mRNA_H-elongata_contig125743.1921.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE) HSP 1 Score: 166 bits (421), Expect = 2.190e-42 Identity = 114/356 (32.02%), Postives = 173/356 (48.60%), Query Frame = 1
Query: 13 PTTMGEAQASSEWPQWKRAIAREMDGQTARGVWQVVER-PKGKTVLGTRVVFKRKIDNDGRIKKYKCRLL------------------------------------------DVDMAYLEAEMEEGIYVELPEAYRDSRKQVGLLKKAMYGLVHAGLLWQKKFGIELEAKGFQRSQVDPCVFRVILHGIVVXXXXXXVDDMLVASATKRDEEQAVMDLCSCFPVKDMGEASYYLGCHTTQDRNAGTPKFDQHQYIQTVKERFGVTKTS-IPSAAGRKALSKSDSPQTDAEVEERRQIPYRKIVEALMWAGTMTRPDISFAAHQQAKFNDNPGPTHWKAAQKALQYLWHTRDLGITY 948
P + EAQ S W+ A++ E++G G + + + P G V+ R VFK K D G+I K K RL+ D++ A++++E++ ++++LP +V L K++YGL A + K+ EL+ GF++S DPCV R ++ VV VDD+L A TK E V L P K++GE ++LGC +DR AGT + Q YI++V ERF V +TS IP+ S ++ ++ E E +P+R++V +LMW TRPDIS A A+ + P +HWKAAQK L YL T L + +
Sbjct: 715 PDSYQEAQRSKYAKIWEGAMSAEVEGLIRAGTFTLAAKVPIGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILYAG-TKSLAEVVVAALGDSLPTKNLGEVRFFLGCAFVRDREAGTIEMSQESYIRSVLERFNVCRTSSIPA-------SPTNDYRSVMEDEGAGDVPFREVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKF 1062
BLAST of mRNA_H-elongata_contig125743.1921.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE) HSP 1 Score: 164 bits (415), Expect = 1.220e-41 Identity = 113/356 (31.74%), Postives = 172/356 (48.31%), Query Frame = 1
Query: 13 PTTMGEAQASSEWPQWKRAIAREMDGQTARGVWQVVER-PKGKTVLGTRVVFKRKIDNDGRIKKYKCRLL------------------------------------------DVDMAYLEAEMEEGIYVELPEAYRDSRKQVGLLKKAMYGLVHAGLLWQKKFGIELEAKGFQRSQVDPCVFRVILHGIVVXXXXXXVDDMLVASATKRDEEQAVMDLCSCFPVKDMGEASYYLGCHTTQDRNAGTPKFDQHQYIQTVKERFGVTKTS-IPSAAGRKALSKSDSPQTDAEVEERRQIPYRKIVEALMWAGTMTRPDISFAAHQQAKFNDNPGPTHWKAAQKALQYLWHTRDLGITY 948
P + EAQ S W+ A++ E++G G + + + P V+ R VFK K D G+I K K RL+ D++ A++++E++ ++++LP +V L K++YGL A + K+ EL+ GF++S DPCV R ++ VV VDD+L A TK E V L P K++GE ++LGC +DR AGT + Q YI++V ERF V +TS IP+ S ++ ++ E E +P+R++V +LMW TRPDIS A A+ + P +HWKAAQK L YL T L + +
Sbjct: 448 PDSYQEAQRSKYAKIWEGAMSAEVEGLIRAGTFTLAAKVPISCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILYAG-TKSLAEVVVAALGDSLPTKNLGEVRFFLGCAFVRDREAGTIEMSQESYIRSVLERFNVCRTSSIPA-------SPTNDYRSVMEDEGAGDVPFREVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKF 795
BLAST of mRNA_H-elongata_contig125743.1921.1 vs. uniprot
Match: A0A6H5L3I1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3I1_9PHAE) HSP 1 Score: 164 bits (414), Expect = 1.840e-41 Identity = 113/360 (31.39%), Postives = 177/360 (49.17%), Query Frame = 1
Query: 1 LDPEPTTMGEAQASSEWPQWKRAIAREMDGQTARGVWQV-VERPKGKTVLGTRVVFKRKIDNDGRIKKYKCRLL------------------------------------------DVDMAYLEAEMEEGIYVELPEAYRDSRKQVGLLKKAMYGLVHAGLLWQKKFGIELEAKGFQRSQVDPCVFRVILHGIVVXXXXXXVDDMLVASATKRDEEQAVMDLCSCFPVKDMGEASYYLGCHTTQDRNAGTPKFDQHQYIQTVKERFGVTKTS-IPSAAGRKALSKSDSPQTDAEVEERRQIPYRKIVEALMWAGTMTRPDISFAAHQQAKFNDNPGPTHWKAAQKALQYLWHTRDLGITY 948
++ EP + EAQ S W+ A + E++G G + + V+ P G V+ R VFK K D G+I K K RL+ D++ A++++E++ +++++P ++V L K++YGL A + K+ EL+ GF++S DPCV ++ VV VDD+L A TK E V L P K++GE ++LGC +DR AGT + Q YI++V ERF + +TS IP++ L+ D ++ E E +P+R++V +LMW + TR DIS A A+ + P +HWKAAQK L YL T L + +
Sbjct: 675 VESEPGSYEEAQRSKYAKIWEGARSAEVEGLMRAGTFTLAVKVPIGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASFRLVVALACKYNLELLHWDIEQAFVQSELDHEVFMKMPPGCGSMSEKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLCFMMGDEVVGMVAIHVDDILYAG-TKSLAEVVVAALGDSLPTKNLGEVKFFLGCEYIRDRKAGTIEISQESYIRSVLERFNIVRTSSIPAS-----LNNDD--RSLMEEEGAGDVPFREVVGSLMWIASQTRADISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKF 1026
BLAST of mRNA_H-elongata_contig125743.1921.1 vs. uniprot
Match: A0A6H5KPV1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPV1_9PHAE) HSP 1 Score: 162 bits (409), Expect = 2.690e-41 Identity = 110/363 (30.30%), Postives = 168/363 (46.28%), Query Frame = 1
Query: 1 LDPEPTTMGEAQASSEWPQWKRAIAREMDGQTARGVWQV-VERPKGKTVLGTRVVFKRKIDNDGRIKKYKCRL------------------------------------------LDVDMAYLEAEMEEGIYVELPEAYRDSRKQVGLLKKAMYGLVHAGLLWQKKFGIELEAKGFQRSQVDPCVFRVILHGIVVXXXXXXVDDMLVASATKRDEEQAVMDLCSCFPVKDMGEASYYLGCHTTQDRNAGTPKFDQHQYIQTVKERFGVTKTSI----PSAAGRKALSKSDSPQTDAEVEERRQIPYRKIVEALMWAGTMTRPDISFAAHQQAKFNDNPGPTHWKAAQKALQYLWHTRDLGITY 948
+ PEP + EA+ S W A++ E +G G + + V+ P G V+ R VFK K D G+I K K RL LD++ A+++ +++ ++++LP +V L K++YGL A + + +L+ GF++S DPCV R ++ V+ VDD+L A + K E V L P K++GE ++LGC +DR AGT + Q YI++V ERF V +TS P+ R + E EE +P+R++V MW + TRPDIS A+ + P +HWKAAQK L YL T L + +
Sbjct: 163 VQPEPDSYQEARQSKHAEVWDVAMSAEFEGLVRAGTFSLAVKVPIGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGIDYLLTFSPTANAASIRLLVALACKYNLELLHLDIEQAFVQTKLDHAVFMKLPPGCGTMSGKVVRLNKSLYGLKQASRTFYMRLVSDLKRIGFEQSLSDPCVLRFMMGDEVMGMVAIHVDDILYAGS-KSLAETVVAALGDSLPTKNLGEVKFFLGCAFRRDREAGTIEISQESYIRSVLERFNVVRTSSIPASPTVVNRSVM----------ENEEAGDVPFREVVGCAMWIASQTRPDISNVVRAVARHSHEPKLSHWKAAQKILNYLLGTAHLSLNF 514 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig125743.1921.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig125743.1921.1 >prot_H-elongata_contig125743.1921.1 ID=prot_H-elongata_contig125743.1921.1|Name=mRNA_H-elongata_contig125743.1921.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=313bp MGEAQASSEWPQWKRAIAREMDGQTARGVWQVVERPKGKTVLGTRVVFKRback to top mRNA from alignment at H-elongata_contig125743:4..1089- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig125743.1921.1 ID=mRNA_H-elongata_contig125743.1921.1|Name=mRNA_H-elongata_contig125743.1921.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1086bp|location=Sequence derived from alignment at H-elongata_contig125743:4..1089- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig125743:4..1089- >mRNA_H-elongata_contig125743.1921.1 ID=mRNA_H-elongata_contig125743.1921.1|Name=mRNA_H-elongata_contig125743.1921.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1878bp|location=Sequence derived from alignment at H-elongata_contig125743:4..1089- (Himanthalia elongata Himel1 dioecious)back to top |