mRNA_H-elongata_contig125715.1920.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig125715.1920.1
Unique NamemRNA_H-elongata_contig125715.1920.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig125715.1920.1 vs. uniprot
Match: D7FTC7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTC7_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 6.560e-30
Identity = 61/84 (72.62%), Postives = 68/84 (80.95%), Query Frame = 1 
Query:    1 AISEENSPSSTPVFGLREEVRTNPEERADMTSTAMIRIDTLDRFSREHRVVGYALVAIFTDPFGNQPTISTARTISLREGNYQV 252
            AISE +SPS+ PVFGLR+E RT PE R DMTST MIR+DTLDRFS EHR VGYAL+AIF DP GNQPT ++A    LREGNYQV
Sbjct: 1291 AISEGDSPSNNPVFGLRQEYRTGPESRMDMTSTVMIRVDTLDRFSSEHRAVGYALLAIFMDPSGNQPTNASADGAFLREGNYQV 1374
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BLAST of mRNA_H-elongata_contig125715.1920.1 vs. uniprot
Match: A0A6H5K786_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K786_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 6.890e-18
Identity = 42/60 (70.00%), Postives = 48/60 (80.00%), Query Frame = 1 
Query:   70 PEERADMTSTAMIRIDTLDRFSREHRVVGYALVAIFTDPFGNQPTISTARTISLREGNYQ 249
            P +R DMTST MIR++TLDRFS EHR VGYAL+AIF DP GNQPT ++A    LREGNYQ
Sbjct: 1071 PLQRMDMTSTVMIRVETLDRFSSEHRAVGYALLAIFMDPSGNQPTNASADGAFLREGNYQ 1130
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig125715.1920.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FTC7_ECTSI6.560e-3072.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K786_9PHAE6.890e-1870.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig125715contigH-elongata_contig125715:440..1623 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score122.9
Seed ortholog evalue7.7e-26
Seed eggNOG ortholog2880.D7FTC7
EggNOG OGs2CP3B@1,2QZQR@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size267
Cds size267
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig125715.1920.1prot_H-elongata_contig125715.1920.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig125715 440..1623 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929743.9639642-CDS-H-elongata_contig125715:439..5171622929743.9639642-CDS-H-elongata_contig125715:439..517Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig125715 440..517 +
1691679140.4569254-CDS-H-elongata_contig125715:439..5171691679140.4569254-CDS-H-elongata_contig125715:439..517Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig125715 440..517 +
1622929743.9795697-CDS-H-elongata_contig125715:896..10161622929743.9795697-CDS-H-elongata_contig125715:896..1016Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig125715 897..1016 +
1691679140.4755597-CDS-H-elongata_contig125715:896..10161691679140.4755597-CDS-H-elongata_contig125715:896..1016Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig125715 897..1016 +
1622929743.9980822-CDS-H-elongata_contig125715:1554..16231622929743.9980822-CDS-H-elongata_contig125715:1554..1623Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig125715 1555..1623 +
1691679140.4867709-CDS-H-elongata_contig125715:1554..16231691679140.4867709-CDS-H-elongata_contig125715:1554..1623Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig125715 1555..1623 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig125715.1920.1

>prot_H-elongata_contig125715.1920.1 ID=prot_H-elongata_contig125715.1920.1|Name=mRNA_H-elongata_contig125715.1920.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=89bp
AISEENSPSSTPVFGLREEVRTNPEERADMTSTAMIRIDTLDRFSREHRV
VGYALVAIFTDPFGNQPTISTARTISLREGNYQVNQLL*
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mRNA from alignment at H-elongata_contig125715:440..1623+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig125715.1920.1 ID=mRNA_H-elongata_contig125715.1920.1|Name=mRNA_H-elongata_contig125715.1920.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1184bp|location=Sequence derived from alignment at H-elongata_contig125715:440..1623+ (Himanthalia elongata Himel1 dioecious)
GCGATAAGCGAGGAGAACAGCCCGAGCAGCACCCCCGTCTTTGGCCTGAG
GGAAGAGGTCCGGACCAACCCGGAAGAGGTGAAATGCGATTGACCCGCGG
GTTCTCACTCCCTGGTACCCTTGTCTGGCGGATTATCATCGCCTGGTGTG
ATTGACCAGCGGTTTCTCACCGCCTGGTTTGATATGCTGGTGGGCTTTCA
CCGCTTGGTGTGATTGGCTTGTGGGTCCTAGACGTGGGGTTTTGATCGAT
AGTAATAGGTGACGGTAATAATATTGTATCGTATTGTACTGTGTATCACA
GAGCTCGGGAAATGAAATCCTCATCAAGCGGCGGGTGACACATCCACACT
ACAGACCCGGGGGGGCGTCGCGTGTTCCAATAATCATGTGTGACGCACAA
TCTTCCTTTCCTTCTTATTTTCTTCGTTGGTTCATTTCCTTCTTATTTTC
TCACAAGCGTGCGGACATGACTAGCACGGCAATGATCCGAATCGACACTC
TCGACCGCTTCTCGCGTGAGCACCGAGTTGTGGGGTACGCCCTCGTGGCG
ATTTTCACGGATCCATTTGGCAATCAGGTGCGCTGGGTGATCCTCGGCTA
CCGCCGAATTCTCCAAGAATACCCCCTCGCCCCCTCCCGCCCCCTACTTT
CTCTACACTACCGTTATATGCTAAAAGTGATTTAGTTTCAAACAGCAGTG
CTGCGGCACGAGATGAAACATTAAAATAAATAAAGGCGAGAGAACTCTCG
AAAAAGGTACTTTCTCGTGGAGTATCTTGGAAGGTTTTTGGAGAAAATAC
GAGGTAGGGTGCAGGGGCGAGGGGGGGAGACTTTTTCAGTCCCAGAGGTG
GGGAGGGGGGGGGGGGGTATAGAGTGTTTCGTAGTACTTGAACGAGAATG
GCGTGGGGAATATATTTTTGGGAGGTTTAAGCCACCAACCAGTAATAGCC
ATGGCTTATGTACCTAACATACGAGTGAAGGTGCTAATGAAAGAATATTT
CATTTGCCAGGCTGTATTGTTTGGTCCATGCGCTAACCTGATCTTCCCTG
GCACATATTTCTCCACATACACCCCTGCCCTTGATCTGCTGCGGCGCCTG
CTGGCGTGCATGCAGCCGACAATATCTACCGCCCGTACGATATCCCTTCG
CGAAGGAAACTACCAGGTGAATCAATTGTTATAA
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Coding sequence (CDS) from alignment at H-elongata_contig125715:440..1623+

>mRNA_H-elongata_contig125715.1920.1 ID=mRNA_H-elongata_contig125715.1920.1|Name=mRNA_H-elongata_contig125715.1920.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=534bp|location=Sequence derived from alignment at H-elongata_contig125715:440..1623+ (Himanthalia elongata Himel1 dioecious)
GCGATAAGCGAGGAGAACAGCCCGAGCAGCACCCCCGTCTTTGGCCTGAG
GGAAGAGGTCCGGACCAACCCGGAAGAGGCGATAAGCGAGGAGAACAGCC
CGAGCAGCACCCCCGTCTTTGGCCTGAGGGAAGAGGTCCGGACCAACCCG
GAAGAGCGTGCGGACATGACTAGCACGGCAATGATCCGAATCGACACTCT
CGACCGCTTCTCGCGTGAGCACCGAGTTGTGGGGTACGCCCTCGTGGCGA
TTTTCACGGATCCATTTGGCAATCAGCGTGCGGACATGACTAGCACGGCA
ATGATCCGAATCGACACTCTCGACCGCTTCTCGCGTGAGCACCGAGTTGT
GGGGTACGCCCTCGTGGCGATTTTCACGGATCCATTTGGCAATCAGCCGA
CAATATCTACCGCCCGTACGATATCCCTTCGCGAAGGAAACTACCAGGTG
AATCAATTGTTATAACCGACAATATCTACCGCCCGTACGATATCCCTTCG
CGAAGGAAACTACCAGGTGAATCAATTGTTATAA
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