mRNA_H-elongata_contig1257.1918.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1257.1918.1
Unique NamemRNA_H-elongata_contig1257.1918.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig1257.1918.1 vs. uniprot
Match: D7FJ97_ECTSI (Thylakoid lumenal protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJ97_ECTSI)

HSP 1 Score: 212 bits (539), Expect = 6.460e-61
Identity = 159/195 (81.54%), Postives = 170/195 (87.18%), Query Frame = 1 
Query:  352 DNPAADITRTLVTLLAGAVVLLSGDGAALADGSTQKFSLPPISTAKDRCVFKSSAMGQANAARDKLYDLRQCNLSGESAAGFDLSGVIASEADFSKGDFKEVVMSKAYARNSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNVDFTEAYMGEFDQRNLCKNPTLKGTNPTTNADTRESVGC 936
            DN +A +   L T LAGA VL SG  AALADGST KFSLPP+   KDRC+FKSSAMGQANAARDKLYDLR+C++SG+SAAGFDLSGVIASEA+FSKGDFKEVVMSKAYAR   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    TEAYMG+FDQ+NLCKNPTLKGTNP TNADTR S GC
Sbjct:    4 DNNSARVA--LGTFLAGAAVLFSGGEAALADGSTTKFSLPPVGQGKDRCLFKSSAMGQANAARDKLYDLRECDMSGKSAAGFDLSGVIASEANFSKGDFKEVVMSKAYARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTEAYMGDFDQKNLCKNPTLKGTNPVTNADTRASAGC 196
[Close]
BLAST of mRNA_H-elongata_contig1257.1918.1 vs. uniprot
Match: A0A836CB03_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB03_9STRA)

HSP 1 Score: 176 bits (447), Expect = 2.750e-47
Identity = 143/196 (72.96%), Postives = 164/196 (83.67%), Query Frame = 1 
Query:  352 DNPAADITRTLVTLLAGAVVLLSGDGAALADGSTQKFSLPPIS-TAKDRCVFKSSAMGQANAARDKLYDLRQCNLSGESAAGFDLSGVIASEADFSKGDFKEVVMSKAYARNSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNVDFTEAYMGEFDQRNLCKNPTLKGTNPTTNADTRESVGC 936
            +  A+  +RT+  +LAG + LL G   ALADGST KF+LPPI+ + KDRC FKSS+MGQANAAR+KL+DLR C++SG+SAA  DLSGVIASEA+FSK DFKE  +SKAYARNS XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  DFTEA MG+FD ++LCKNPTLKG NP T A T+ES GC
Sbjct:   37 EGGASPFSRTVAAVLAG-ISLLGGAELALADGSTGKFALPPINYSEKDRCTFKSSSMGQANAAREKLFDLRMCDMSGKSAALSDLSGVIASEANFSKVDFKEAQLSKAYARNSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDFTEAAMGDFDLKSLCKNPTLKGENPVTGAPTKESAGC 231
[Close]
BLAST of mRNA_H-elongata_contig1257.1918.1 vs. uniprot
Match: A0A448ZE67_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZE67_9STRA)

HSP 1 Score: 158 bits (400), Expect = 1.410e-40
Identity = 134/212 (63.21%), Postives = 151/212 (71.23%), Query Frame = 1 
Query:  313 RPPSCLLMSTSGPDNPAADITRTLVTLLAGAV---VLLSGDGAALADGSTQKFSLPPIS-TAKDRCVFKSSAMGQANAARDKLYDLRQCNLSGESAAGFDLSGVIASEADFSKGDFKEVVMSKAYARNSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNVDFTEAYMGEFDQRNLCKNPTLKGTNPTTNADTRESVGC 936
            R P+  L +T   D  + + T      LA      +L +G   A ADG T+KF LPP+  T K RC  KSS++GQANAARDKLYDLRQC LSGESA GFDLSGVI +E D SK +F++ V SK Y R+SN    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    TEA +G FD +NLCKNPTLKG NPTT  DTR SVGC
Sbjct:   26 RTPTLSLQATKNHDRESENATTFANVALASIFSLSLLSAGPLPAFADGQTEKFKLPPVDLTDKTRCTLKSSSIGQANAARDKLYDLRQCKLSGESAVGFDLSGVIMTETDVSKVNFQDAVFSKGYLRDSNFEGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTEAAIGNFDLKNLCKNPTLKGENPTTGEDTRFSVGC 237
[Close]
BLAST of mRNA_H-elongata_contig1257.1918.1 vs. uniprot
Match: A0A7S2UM92_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UM92_9STRA)

HSP 1 Score: 149 bits (377), Expect = 2.710e-37
Identity = 128/196 (65.31%), Postives = 144/196 (73.47%), Query Frame = 1 
Query:  352 DNPAADITRTLVTLLAGAVVLLSGDGAALADGSTQKFSLPPISTA-KDRCVFKSSAMGQANAARDKLYDLRQCNLSGESAAGFDLSGVIASEADFSKGDFKEVVMSKAYARNSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNVDFTEAYMGEFDQRNLCKNPTLKGTNPTTNADTRESVGC 936
            +   A+  R  ++    A+ L +   A+LADG T+ F LPPI    K RCV  SSAMGQANAARDKLYDLRQCNLSG+ A+GFDLSGVI ++ + S    KE   SKAY     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  DFT+AY+GE+D RNLCKNPTLKG NP T  DTR S  C
Sbjct:   49 EGDGAETFRQAISGAVVALTLFTSPMASLADGQTKDFKLPPIDVNDKTRCVLNSSAMGQANAARDKLYDLRQCNLSGKDASGFDLSGVIMTDTNLSNAKLKEAQFSKAYLHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADFTDAYIGEYDIRNLCKNPTLKGENPVTGVDTRFSANC 244
[Close]
BLAST of mRNA_H-elongata_contig1257.1918.1 vs. uniprot
Match: A0A7S4A906_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4A906_9STRA)

HSP 1 Score: 149 bits (375), Expect = 3.990e-37
Identity = 125/206 (60.68%), Postives = 146/206 (70.87%), Query Frame = 1 
Query:  331 LMSTSGPDNPAADITRTLVTLLAGAV---VLLSGDGAALADGSTQKFSLPPISTA-KDRCVFKSSAMGQANAARDKLYDLRQCNLSGESAAGFDLSGVIASEADFSKGDFKEVVMSKAYARNSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNVDFTEAYMGEFDQRNLCKNPTLKGTNPTTNADTRESVGC 936
            L ST   D  +  +T+     LA      +L +G   A ADG T+KF LPP+  A K+RC   SS +GQANAARDKLYDLRQCNLSG++A GFDLSGVI +  D SK +F++ + SKAY R+SN     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     E+ +G FD +NLCKNP+LKG NP T  DTR SVGC
Sbjct:   32 LQSTKNHDRESDKVTKFANVALASIFSLSLLSAGPLPAFADGQTEKFKLPPVDLADKNRCTLSSSTIGQANAARDKLYDLRQCNLSGKAAVGFDLSGVIMTGTDVSKVNFQDAIFSKAYLRDSNFEGADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESALGNFDLKNLCKNPSLKGENPVTGEDTRLSVGC 237
[Close]
BLAST of mRNA_H-elongata_contig1257.1918.1 vs. uniprot
Match: A0A4D9D0Q4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D0Q4_9STRA)

HSP 1 Score: 149 bits (375), Expect = 4.700e-37
Identity = 124/190 (65.26%), Postives = 145/190 (76.32%), Query Frame = 1 
Query:  370 ITRTLVTLLAGAVVLLSGDGAALADGSTQKFSLPPISTA-KDRCVFKSSAMGQANAARDKLYDLRQCNLSGESAAGFDLSGVIASEADFSKGDFKEVVMSKAYARNSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNVDFTEAYMGEFDQRNLCKNPTLKGTNPTTNADTRESVGC 936
            +T  ++++L  A V  S   A +ADG+T +F LPP+ T  K RC FKSS MGQANAARDKLYDLR C++SG+ A GFDLSG I +E  F K +FKE V+SKAYA+ ++XXXXXXXXXXXX    XXXXXXXXXXXXXXXXXXXXXXXXXX    T+ YMGEF+ R LCKNPTLKGTNP T A T+ES GC
Sbjct:   57 LTVAVLSVLFPAAVTFSPPPA-IADGATSRFVLPPVDTKDKGRCQFKSSNMGQANAARDKLYDLRLCDMSGKDATGFDLSGAIMAEGTFKKVNFKEAVLSKAYAKAADXXXXXXXXXXXXRVSFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTDTYMGEFNLRELCKNPTLKGTNPVTQAPTKESAGC 245
[Close]
BLAST of mRNA_H-elongata_contig1257.1918.1 vs. uniprot
Match: A0A7S1H2G8_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1H2G8_9STRA)

HSP 1 Score: 146 bits (368), Expect = 1.180e-36
Identity = 121/177 (68.36%), Postives = 132/177 (74.58%), Query Frame = 1 
Query:  409 VLLSGDGAALADGSTQKFSLPPISTA-KDRCVFKSSAMGQANAARDKLYDLRQCNLSGESAAGFDLSGVIASEADFSKGDFKEVVMSKAYARNSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNVDFTEAYMGEFDQRNLCKNPTLKGTNPTTNADTRESVGC 936
            V+LS    + ADG T++F LPPI    K RC   SSA+GQANAARDKLYDLR+C LSGE A GFDLSGVI ++ D SK DFKE   SK Y R+SN     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      AY+G+FD RNLCKNPTLKG N  T ADTR S GC
Sbjct:   21 VILSSPMPSYADGQTKEFKLPPIDFKDKSRCTLSSSAIGQANAARDKLYDLRECKLSGEKATGFDLSGVIMTKTDVSKVDFKEAYFSKGYLRDSNFDGADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAYIGDFDIRNLCKNPTLKGENSVTGADTRLSAGC 197
[Close]
BLAST of mRNA_H-elongata_contig1257.1918.1 vs. uniprot
Match: A0A7S3B0S2_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3B0S2_9EUKA)

HSP 1 Score: 145 bits (367), Expect = 3.710e-36
Identity = 122/169 (72.19%), Postives = 135/169 (79.88%), Query Frame = 1 
Query:  433 ALADGSTQKFSLPPI-STAKDRCVFKSSAMGQANAARDKLYDLRQCNLSGESAAGFDLSGVIASEADFSKGDFKEVVMSKAYARNSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNVDFTEAYMGEFDQRNLCKNPTLKGTNPTTNADTRESVGC 936
            ALADG T KF  PPI +T K+RC F SSAMGQANAARD LYDLRQC+++G  A GFD+SG + +  DFS  +FKE  +SK YA    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  DFTEAY+G++DQR LCKNP LKG NP T A TRES GC
Sbjct:   60 ALADGDTSKFKFPPIDNTNKNRCQFSSSAMGQANAARDSLYDLRQCSMAGTMAMGFDISGALLAGGDFSGVNFKEAQLSKVYAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDFTEAYIGDYDQRKLCKNPKLKGENPKTGAPTRESAGC 228
[Close]
BLAST of mRNA_H-elongata_contig1257.1918.1 vs. uniprot
Match: A0A1Z5KF76_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KF76_FISSO)

HSP 1 Score: 146 bits (369), Expect = 4.590e-36
Identity = 120/171 (70.18%), Postives = 138/171 (80.70%), Query Frame = 1 
Query:  427 GAALADGSTQKFSLPPISTAK-DRCVFKSSAMGQANAARDKLYDLRQCNLSGESAAGFDLSGVIASEADFSKGDFKEVVMSKAYARNSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNVDFTEAYMGEFDQRNLCKNPTLKGTNPTTNADTRESVGC 936
            GAALADG T KF LPPI  +  +RCV KSS++GQANAARDKLYDLR CN+  + A G+DLSGVI ++ D  K +F++   SKAY  +  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  DF++AYMG+FD R+LCKNPTL+GTNP T  DTR S GC
Sbjct:   89 GAALADGQTSKFKLPPIDYSDPNRCVLKSSSIGQANAARDKLYDLRACNIPEQKAVGYDLSGVITTKTDLRKSNFQDAQFSKAYLHDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTDFSDAYMGDFDSRSLCKNPTLQGTNPVTGVDTRASAGC 259
[Close]
BLAST of mRNA_H-elongata_contig1257.1918.1 vs. uniprot
Match: A0A7S2H4B8_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2H4B8_9EUKA)

HSP 1 Score: 144 bits (364), Expect = 8.340e-36
Identity = 113/169 (66.86%), Postives = 125/169 (73.96%), Query Frame = 1 
Query:  433 ALADGSTQKFSLPPISTA-KDRCVFKSSAMGQANAARDKLYDLRQCNLSGESAAGFDLSGVIASEADFSKGDFKEVVMSKAYARNSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNVDFTEAYMGEFDQRNLCKNPTLKGTNPTTNADTRESVGC 936
            ALADG T++F  PPI    KDRC F SSAMGQANAARD LYDLR+C +S  +AAGFD+SG + +  DFSK DFKE  +SK YA  +    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      + DFTEAY+G FD R LCKNPTL G NP T A TR S GC
Sbjct:   54 ALADGDTKEFKFPPIDRKNKDRCKFSSSAMGQANAARDSLYDLRECAMSETNAAGFDISGALMANGDFSKVDFKEAQLSKVYAPGAKFDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEADLKDADFTEAYIGMFDLRKLCKNPTLDGENPITGAPTRASAGC 222
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1257.1918.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJ97_ECTSI6.460e-6181.54Thylakoid lumenal protein n=2 Tax=Ectocarpus TaxID... [more]
A0A836CB03_9STRA2.750e-4772.96Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A448ZE67_9STRA1.410e-4063.21Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S2UM92_9STRA2.710e-3765.31Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S4A906_9STRA3.990e-3760.68Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A4D9D0Q4_9STRA4.700e-3765.26Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S1H2G8_9STRA1.180e-3668.36Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]
A0A7S3B0S2_9EUKA3.710e-3672.19Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A1Z5KF76_FISSO4.590e-3670.18Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A7S2H4B8_9EUKA8.340e-3666.86Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1257contigH-elongata_contig1257:7493..12023 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score214.2
Seed ortholog evalue7.8e-53
Seed eggNOG ortholog2880.D7FJ97
EggNOG free text desc.Pentapeptide repeats (9 copies)
EggNOG OGs28M7V@1,2QTR1@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionthylakoid lumenal protein
Ec32 orthologEc-12_008340.1
Exons5
Model size2088
Cds size813
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929743.7209308-UTR-H-elongata_contig1257:7492..76211622929743.7209308-UTR-H-elongata_contig1257:7492..7621Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1257 7493..7621 +
1691679140.329087-UTR-H-elongata_contig1257:7492..76211691679140.329087-UTR-H-elongata_contig1257:7492..7621Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1257 7493..7621 +
1622929743.8088486-UTR-H-elongata_contig1257:10877..120231622929743.8088486-UTR-H-elongata_contig1257:10877..12023Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1257 10878..12023 +
1691679140.4199867-UTR-H-elongata_contig1257:10877..120231691679140.4199867-UTR-H-elongata_contig1257:10877..12023Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1257 10878..12023 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929743.7354722-CDS-H-elongata_contig1257:7621..80671622929743.7354722-CDS-H-elongata_contig1257:7621..8067Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1257 7622..8067 +
1691679140.351048-CDS-H-elongata_contig1257:7621..80671691679140.351048-CDS-H-elongata_contig1257:7621..8067Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1257 7622..8067 +
1622929743.750439-CDS-H-elongata_contig1257:9146..92521622929743.750439-CDS-H-elongata_contig1257:9146..9252Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1257 9147..9252 +
1691679140.3646047-CDS-H-elongata_contig1257:9146..92521691679140.3646047-CDS-H-elongata_contig1257:9146..9252Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1257 9147..9252 +
1622929743.7685509-CDS-H-elongata_contig1257:9729..98041622929743.7685509-CDS-H-elongata_contig1257:9729..9804Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1257 9730..9804 +
1691679140.3800337-CDS-H-elongata_contig1257:9729..98041691679140.3800337-CDS-H-elongata_contig1257:9729..9804Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1257 9730..9804 +
1622929743.7803462-CDS-H-elongata_contig1257:10150..102281622929743.7803462-CDS-H-elongata_contig1257:10150..10228Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1257 10151..10228 +
1691679140.4021008-CDS-H-elongata_contig1257:10150..102281691679140.4021008-CDS-H-elongata_contig1257:10150..10228Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1257 10151..10228 +
1622929743.7936485-CDS-H-elongata_contig1257:10769..108771622929743.7936485-CDS-H-elongata_contig1257:10769..10877Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1257 10770..10877 +
1691679140.4120178-CDS-H-elongata_contig1257:10769..108771691679140.4120178-CDS-H-elongata_contig1257:10769..10877Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1257 10770..10877 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1257.1918.1prot_H-elongata_contig1257.1918.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1257 7622..10877 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1257.1918.1

>prot_H-elongata_contig1257.1918.1 ID=prot_H-elongata_contig1257.1918.1|Name=mRNA_H-elongata_contig1257.1918.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=271bp
MKSALTATGAMAAILAALSIASCMVSSAAFLAGAGGAFGRNVHSSDCSSL
PSTITMARATLRPPSCLLMSTSGPDNPAADITRTLVTLLAGAVVLLSGDG
AALADGSTQKFSLPPISTAKDRCVFKSSAMGQANAARDKLYDLRQCNLSG
ESAAGFDLSGVIASEADFSKGDFKEVVMSKAYARNSNWENADFTNAVVDR
VSFDDSSLKGAIFQNAVLTSTSFTGANVENVDFTEAYMGEFDQRNLCKNP
TLKGTNPTTNADTRESVGCP*
back to top

mRNA from alignment at H-elongata_contig1257:7493..12023+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1257.1918.1 ID=mRNA_H-elongata_contig1257.1918.1|Name=mRNA_H-elongata_contig1257.1918.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4531bp|location=Sequence derived from alignment at H-elongata_contig1257:7493..12023+ (Himanthalia elongata Himel1 dioecious)
GCTTTGTATTTTGGTTCTGCGCTATTTTGGCATAAAAATAAAGCTTGAAA
TCGCCTGAAATCATATTTGAGGCTTGAAGTCGTTCGATATGTCGTTGTCT
ACATTAGGTCACAATTAACAGGAAATAAGATGAAGTCAGCACTAACAGCC
ACGGGGGCAATGGCGGCAATACTTGCAGCATTATCTATTGCCTCGTGCAT
GGTGAGCTCGGCCGCGTTTCTTGCTGGAGCTGGTGGAGCGTTTGGACGCA
ACGTCCACAGCAGCGATTGCTCCTCACTACCCTCGACGATCACAATGGCC
AGGGCGACCTTACGACCACCATCATGCCTCCTCATGTCGACAAGCGGCCC
TGATAACCCCGCAGCAGATATCACGAGGACTCTGGTGACTCTCCTGGCGG
GCGCAGTAGTATTGCTTTCCGGCGATGGGGCTGCCCTGGCCGATGGCTCG
ACTCAGAAGTTCAGCCTGCCTCCAATCTCGACTGCGAAGGATCGATGCGT
TTTCAAGTCATCGGCTATGGGACAAGCCAACGCTGCCAGGGATAAGCTGT
ACGACCTTCGACAGTGCAACCTCAGGTAGGGGCCGGCTCTATCCAGGCAT
GTGACAATTTGATCCGTCTGGTTGCTAATATCGAGGTGCTCTCAAAGCGT
GACTGGCATGGGATGAACATATACCGTCCTCTCTTCAGGCGACTTTCATT
CCTAGAGATCAGTACGTGTTGCTCTAGACGAAGCAGGGTCGACTTTGAGT
AAAGCGCCCTATAAGTATCAATAAGCAGTAAGGGGTGAGTCGGGAGACAA
TTTGCAGTTCGCTCCCGTGGGGTGAAGGTGGATTAAAGCTTCACTTGCAC
GCGCCGAGCTGTACCTGGCATTCGCGATGTTGGTGCGGGCTCACGTTAAA
CTAAAGGCTGTACGGACAACGGAGCAAAATAATTGTGTGCGTAATGCTGA
GTGCGCATGAAATTTTAGCGTTCTGTGCGCATGATTTTCAGCCCCTTTTG
AGGCAACTCTCCAATTTTATAATTTACCTACAACAGGAGCAATCCTGGGC
TTTTGTGTCTGTTTTGGTGTCCTGCATCCTACTCTTTTAACTGTGAATAG
CGTGTCTCGGTGCCTTTACAAGGTATTTAGATTTATGCCAAGGTTGTAGC
CAACTTGATGAAGTACGAAAAATTAGCGTAGATCTCGAGCTAGGAGGTCA
AGCACTTGGCCAGCGCTACCGCATGCAGGAGACCCGAACGCGTCATATCC
CGCGGCATCTTGTCCTTTGGAGCTCATTAAAGGGCGTGAGCGTGCACCAC
GATGGAGACGAATATATTGTATTCCTGGCAAATAGAAACAGACAGCGCGA
CACACACCATGTTTAGGTATACGAAAGATTTGAACATCGCGCTGCCAGGT
GTATCTTATCGGGGTCCTGCGGCAGATGCATCACGCGCAGGATCACACGT
CAATCATCGACACGAACACATGCTCACGTGCGAGCATGTACACACACAAA
CGAATAAAAACAGCATGTGTAAGGCGGACAGACTGAGAGACGGCACCTGG
TTCGCATGCTGAGAACCCACTTGCGGACAATATTGCGCTAGACGAATGGG
CGATGACCCTATTACCCGTGTCCCCGTTGGCGGACCTGACTCGACTGCCC
GCAGCGGAGAGTCGGCAGCAGGTTTTGACTTGAGCGGCGTTATTGCTTCG
GAGGCAGATTTCTCTAAGGGAGACTTCAAGGAAGTGGTCATGTCGAAGGC
CTACGCCAGGGTGAGGGGACAACGGTCCGAGCAGTTCCGTCCTTTTCCCG
TGTGATTATTTTTCCATTGCAAAAAGGCGACGAGGGGATTATCGACCGGT
CGTGGTAATGTATCCATAAACCACCTTTTGCAGCTATCGGACCTGAAGTC
CCTAATAAACGCCTTCCTGTATCACCTGCAACGACCGCGATCGGATGAAT
ATTACGTTTGGGCTTTATGCGAGTTGATATCCTACATTTAAAATCGAAGA
TCGGCGATTCCCCGGTCTTTACCATAAGACAATAAGTGAAACGTTGCAAT
CCACGCAATGCTCACGCTTTCACGGAGTGGTCACTAAAACGTGGCCAAGC
GATGTCACTAGTATCTTCAACGCCGAAGCAACTCGCTCACTCGGGTTCTT
TAAAGAGCAAGCAAGTGTCATTATCTTGGATCAACGCGGTTCCTCTTACC
CCCCCGCCCTCCCCACGTTTTATGTTGTGTGAGCCAGAATTCGAACTGGG
AGAACGCGGACTTCACCAACGCGGTGGTGGACAGAGTCTCGTTTGACGAC
TCATCCTTGAAGGTGATACATCGCGCTTGTATTGAACGAGAAGGTTTGGG
GCAGTGGGTGTCAAAAGGGAATTGCGTTCGCCTGACGTTTGCGTTGTGTG
AAGGAGGAAGGAATGGGGTGCAACGAGGGCGATCTTGCAAAATAACTCAA
TGGAAGAGAAATATCGCAACAACCTCCAAGTTCTCGAGTCTTGTCCAAAG
CGATACCGATGCCGCGTTTCTCCTCAGCGACACAGTAGTAGTAGTAGTAG
TAGGTGACGAACACTGTGTACTGTACTACTGTGTAACACTGTGTACTATA
CTCGCGGGAGATATATATTTCGCGTTTCTTCCGGTGTACGACCATGCCGA
TGCCACAGGGCGCGATCTTCCAGAACGCGGTCCTCACCAGCACGAGCTTC
ACGGGTGCCAACGTAGAGAACGTCGACTTCACCGAGGTGACGAAACAAGT
CGGCAGCAGTACTATTTCGCTTTCTAATTGTTTCAAGGAATAAACCTGAT
TGCAATGCTTGAACGGTTTTCTAGTGAAACAGAAATTATTTAGTGGTGAC
TGCACGGTCAGTTCCGACATTCTCAGGGTAGGACCATGATCTGATCCCAT
CTCCTAGATATGAACCGGTAGAGGTCACGGGATACACAAATGGGAGGAAC
TTACTGTCGATAAGAGGTCAAGCACCCTCTTCCCTTTGTCGTTGCCGATG
ATGCCGTTGGATCGCCAACTGCAACTCTGCGCTGGGTATTTCCGTTAGCA
GATTGGCAATTCTGCATGTTCTTGAACGTGTGGGATACGCACTGTGGTAC
AACATATGTCCTCGATGCCGAGCGCTCAAAATATTTTCGGGGAAGGATCA
ATAATTCAAACGGAGTCGAACTGTCCTGTGACTATGTATGTTCACTTTGC
CTTCGCTTCCCCGATCAATCGATGCCACCGCGTCTGTTGTGGAAATCCTG
CCACGGTTTGTCCGGAAACCTCCATAGGCCTACATGGGGGAATTCGATCA
ACGAAACTTGTGCAAGAATCCTACCTTGAAGGGCACCAACCCCACAACAA
ACGCGGATACTCGAGAGAGCGTTGGCTGCCCGTAGGGGCACTGACGTCAA
GCCGCGTTGTCGTACCCAATGTTTTGATTCTGTTGAGGTGTTTATTTTTA
GGAATATTTCAGTCCCCGTCCCCAGCAATACAACGGGGTTCGACTGAGGG
AGGCGTCGGTGTTGCTCGACATCCTGTCAAGGAGGGAACGTGTGTTTACT
TTCCAAGCGCCTCTGGCACGTTTTTGCTCAAGACTTTGAGTGAAATTTTG
GTGCGTGGGTTTGTTATGCATGTCATATTAGAAGAGAGCACGCAGTTAAA
ATAATTAAGAAAAAAATTAGAGCGTATGGAAACCCCCTGCGCGCTCATCA
GCAGCTATAGATGGGGAGAGGGGGCGTGCAGGACTGATGGCGTGCGTAAA
CCTTGCCGACCATGGGCCGATTTTTGTTACTTTTAAGAAAGTGGCAGCAT
GATGGCATGAGATGAAGTCAAATGTCCGGTGGTTGCAGAGCCGACAACTT
CATGTTTTACCGTAACGATACCAAAATCGAACGAAACGCCTTTTTCACAC
GGGGCAGAAATTTTAGCATGCTATCTATCGTCAGTGATGTAGTCGATCGA
CAAGTATCAGTAGGTGGAGGGGAACTGGGACAGTAAAATGAAATATGCAA
TCATGCGTATGTTCAGTAGGGCGAGTGACCGCTTTGTGTCTGAACGGTCG
ATTTGAGGACACCTCCCCCCCCGCCCCACCGCCCCTAAAACTAAAGGATT
GCTAAATCCATACCGCAACATTTGGATGCGAACGTTAAGCATACCAATAC
GTGTCTTTCGAGAAACCTCGAGACGGCTTTGATTAAGATGTACAACCACT
CTATGTAGGCGTTGACACTCATCATTGTGTAGAAGTGCGCCTTTACACAC
GACGATGGCATCACTTCGCTCTATACCCCCGTTCTTGAAATAGTTCCGAC
AGCGGAATGCCATGATTACATCTTCGTCCTTGTTCAGCACCTACTGCTGG
CTCTGGCTCTGAGCGAGGGGAAATCAGCCTCGAATGGGCACCCATCGTGC
TATTCCCTCTCTAATGGTGTTACAAATCATTCGTTTAACCCTTGTTGATG
GGTGTCCACGCGATGCGGAGTACGAGGTCGAAGCGCGAGGACACCCGGGC
GAGGGAAAATGCAATATTATTCCCGTTTCAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig1257:7493..12023+

>mRNA_H-elongata_contig1257.1918.1 ID=mRNA_H-elongata_contig1257.1918.1|Name=mRNA_H-elongata_contig1257.1918.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1626bp|location=Sequence derived from alignment at H-elongata_contig1257:7493..12023+ (Himanthalia elongata Himel1 dioecious)
ATGAAGTCAGCACTAACAGCCACGGGGGCAATGGCGGCAATACTTGCAGC
ATTATCTATTGCCTCGTGCATGGTGAGCTCGGCCGCGTTTCTTGCTGGAG
CTGGTGGAGCGTTTGGACGCAACGTCCACAGCAGCGATTGCTCCTCACTA
CCCTCGACGATCACAATGGCCAGGGCGACCTTACGACCACCATCATGCCT
CCTCATGTCGACAAGCGGCCCTGATAACCCCGCAGCAGATATCACGAGGA
CTCTGGTGACTCTCCTGGCGGGCGCAGTAGTATTGCTTTCCGGCGATGGG
GCTGCCCTGGCCGATGGCTCGACTCAGAAGTTCAGCCTGCCTCCAATCTC
GACTGCGAAGGATCGATGCGTTTTCAAGTCATCGGCTATGGGACAAGCCA
ACGCTGCCAGGGATAAGCTGTACGACCTTCGACAGTGCAACCTCAGATGA
AGTCAGCACTAACAGCCACGGGGGCAATGGCGGCAATACTTGCAGCATTA
TCTATTGCCTCGTGCATGGTGAGCTCGGCCGCGTTTCTTGCTGGAGCTGG
TGGAGCGTTTGGACGCAACGTCCACAGCAGCGATTGCTCCTCACTACCCT
CGACGATCACAATGGCCAGGGCGACCTTACGACCACCATCATGCCTCCTC
ATGTCGACAAGCGGCCCTGATAACCCCGCAGCAGATATCACGAGGACTCT
GGTGACTCTCCTGGCGGGCGCAGTAGTATTGCTTTCCGGCGATGGGGCTG
CCCTGGCCGATGGCTCGACTCAGAAGTTCAGCCTGCCTCCAATCTCGACT
GCGAAGGATCGATGCGTTTTCAAGTCATCGGCTATGGGACAAGCCAACGC
TGCCAGGGATAAGCTGTACGACCTTCGACAGTGCAACCTCAGCGGAGAGT
CGGCAGCAGGTTTTGACTTGAGCGGCGTTATTGCTTCGGAGGCAGATTTC
TCTAAGGGAGACTTCAAGGAAGTGGTCATGTCGAAGGCCTACGCCAGGCG
GAGAGTCGGCAGCAGGTTTTGACTTGAGCGGCGTTATTGCTTCGGAGGCA
GATTTCTCTAAGGGAGACTTCAAGGAAGTGGTCATGTCGAAGGCCTACGC
CAGGAATTCGAACTGGGAGAACGCGGACTTCACCAACGCGGTGGTGGACA
GAGTCTCGTTTGACGACTCATCCTTGAAGAATTCGAACTGGGAGAACGCG
GACTTCACCAACGCGGTGGTGGACAGAGTCTCGTTTGACGACTCATCCTT
GAAGGGCGCGATCTTCCAGAACGCGGTCCTCACCAGCACGAGCTTCACGG
GTGCCAACGTAGAGAACGTCGACTTCACCGAGGGCGCGATCTTCCAGAAC
GCGGTCCTCACCAGCACGAGCTTCACGGGTGCCAACGTAGAGAACGTCGA
CTTCACCGAGGCCTACATGGGGGAATTCGATCAACGAAACTTGTGCAAGA
ATCCTACCTTGAAGGGCACCAACCCCACAACAAACGCGGATACTCGAGAG
AGCGTTGGCTGCCCGTAGGCCTACATGGGGGAATTCGATCAACGAAACTT
GTGCAAGAATCCTACCTTGAAGGGCACCAACCCCACAACAAACGCGGATA
CTCGAGAGAGCGTTGGCTGCCCGTAG
back to top