mRNA_H-elongata_contig125688.1916.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig125688.1916.1
Unique NamemRNA_H-elongata_contig125688.1916.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig125688.1916.1 vs. uniprot
Match: D7G4M1_ECTSI (Smc-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4M1_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 8.530e-15
Identity = 35/43 (81.40%), Postives = 41/43 (95.35%), Query Frame = 1 
Query:    1 RNVNFISGRNGSGKSAILAALQICLGANAHSTHRARKLSDFIR 129
            ++VNFI+GRNGSGKSAILAALQICLGA AH THRA+K++DFIR
Sbjct:  106 KHVNFINGRNGSGKSAILAALQICLGAKAHLTHRAKKMADFIR 148
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BLAST of mRNA_H-elongata_contig125688.1916.1 vs. uniprot
Match: D7G4M2_ECTSI (Smc-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4M2_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 1.160e-14
Identity = 35/43 (81.40%), Postives = 40/43 (93.02%), Query Frame = 1 
Query:    1 RNVNFISGRNGSGKSAILAALQICLGANAHSTHRARKLSDFIR 129
            + VNFI+GRNGSGKSAILAALQICLGA AH THRA+K++DFIR
Sbjct:  199 KQVNFINGRNGSGKSAILAALQICLGAKAHLTHRAKKMTDFIR 241
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BLAST of mRNA_H-elongata_contig125688.1916.1 vs. uniprot
Match: A0A836CML4_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CML4_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 6.740e-13
Identity = 34/43 (79.07%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:    1 RNVNFISGRNGSGKSAILAALQICLGANAHSTHRARKLSDFIR 129
            RN+NFI+G NGSGKSAILAALQICLGA A  THRA KL D IR
Sbjct:   97 RNINFINGSNGSGKSAILAALQICLGARARVTHRAHKLEDLIR 139
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BLAST of mRNA_H-elongata_contig125688.1916.1 vs. uniprot
Match: F0YEV5_AURAN (SMC_N domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YEV5_AURAN)

HSP 1 Score: 66.2 bits (160), Expect = 6.770e-13
Identity = 30/43 (69.77%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:    1 RNVNFISGRNGSGKSAILAALQICLGANAHSTHRARKLSDFIR 129
            R +NFI+G NGSGKSAILAALQICLGA+A STHR  ++ D +R
Sbjct:   34 RRINFINGANGSGKSAILAALQICLGASAKSTHRGNRMGDLVR 76
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BLAST of mRNA_H-elongata_contig125688.1916.1 vs. uniprot
Match: A0A1Z5JCK2_FISSO (AAA_23 domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JCK2_FISSO)

HSP 1 Score: 69.7 bits (169), Expect = 9.210e-13
Identity = 34/43 (79.07%), Postives = 37/43 (86.05%), Query Frame = 1 
Query:    1 RNVNFISGRNGSGKSAILAALQICLGANAHSTHRARKLSDFIR 129
            RNVNFI+G+NGSGKSAILAALQICLGA A +THRA  L D IR
Sbjct:  107 RNVNFITGQNGSGKSAILAALQICLGAGARNTHRAGNLKDLIR 149
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BLAST of mRNA_H-elongata_contig125688.1916.1 vs. uniprot
Match: B8BRT7_THAPS (Smc-like protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BRT7_THAPS)

HSP 1 Score: 69.3 bits (168), Expect = 1.260e-12
Identity = 32/43 (74.42%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:    1 RNVNFISGRNGSGKSAILAALQICLGANAHSTHRARKLSDFIR 129
            RNVNFI G+NGSGKSAILAA+Q+CLGA A  THRAR L D +R
Sbjct:  122 RNVNFIHGQNGSGKSAILAAIQVCLGAGARRTHRARNLKDLVR 164
[Close]
BLAST of mRNA_H-elongata_contig125688.1916.1 vs. uniprot
Match: A0A448ZJ22_9STRA (SMC_N domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZJ22_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 1.260e-12
Identity = 33/43 (76.74%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:    1 RNVNFISGRNGSGKSAILAALQICLGANAHSTHRARKLSDFIR 129
            RNVNFI G+NGSGKSAILAA+QICLGA A  THRAR L D +R
Sbjct:  138 RNVNFIYGQNGSGKSAILAAIQICLGAGARRTHRARNLKDLVR 180
[Close]
BLAST of mRNA_H-elongata_contig125688.1916.1 vs. uniprot
Match: A0A7S1FSU6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FSU6_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 1.260e-12
Identity = 33/43 (76.74%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:    1 RNVNFISGRNGSGKSAILAALQICLGANAHSTHRARKLSDFIR 129
            RNVNFI G+NGSGKSA+LAA+QICLGA A  THRAR L D IR
Sbjct:  122 RNVNFIHGQNGSGKSAVLAAVQICLGAGARRTHRARNLKDLIR 164
[Close]
BLAST of mRNA_H-elongata_contig125688.1916.1 vs. uniprot
Match: A0A7S2KU12_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KU12_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 1.260e-12
Identity = 32/43 (74.42%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:    1 RNVNFISGRNGSGKSAILAALQICLGANAHSTHRARKLSDFIR 129
            RNVNFI G+NGSGKSAILAA+Q+CLGA A  THRAR L D +R
Sbjct:  136 RNVNFIHGQNGSGKSAILAAIQVCLGAGARRTHRARNLKDLVR 178
[Close]
BLAST of mRNA_H-elongata_contig125688.1916.1 vs. uniprot
Match: A0A8J9SZH1_PHATR (Hypothetical protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9SZH1_PHATR)

HSP 1 Score: 67.0 bits (162), Expect = 1.920e-12
Identity = 32/43 (74.42%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:    1 RNVNFISGRNGSGKSAILAALQICLGANAHSTHRARKLSDFIR 129
            RNVNFI G+NGSGKSAILAA+QICLGA+A  THRAR L   +R
Sbjct:   86 RNVNFIHGQNGSGKSAILAAIQICLGASASRTHRARNLKGLVR 128
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig125688.1916.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4M1_ECTSI8.530e-1581.40Smc-like protein n=1 Tax=Ectocarpus siliculosus Ta... [more]
D7G4M2_ECTSI1.160e-1481.40Smc-like protein n=2 Tax=Ectocarpus TaxID=2879 Rep... [more]
A0A836CML4_9STRA6.740e-1379.07P-loop containing nucleoside triphosphate hydrolas... [more]
F0YEV5_AURAN6.770e-1369.77SMC_N domain-containing protein (Fragment) n=1 Tax... [more]
A0A1Z5JCK2_FISSO9.210e-1379.07AAA_23 domain-containing protein n=2 Tax=Fistulife... [more]
B8BRT7_THAPS1.260e-1274.42Smc-like protein n=1 Tax=Thalassiosira pseudonana ... [more]
A0A448ZJ22_9STRA1.260e-1276.74SMC_N domain-containing protein n=1 Tax=Pseudo-nit... [more]
A0A7S1FSU6_9STRA1.260e-1276.74Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]
A0A7S2KU12_9STRA1.260e-1274.42Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A8J9SZH1_PHATR1.920e-1274.42Hypothetical protein (Fragment) n=2 Tax=Phaeodacty... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig125688contigH-elongata_contig125688:1537..1668 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.1
Seed ortholog evalue9.1e-12
Seed eggNOG ortholog2880.D7G4M1
Preferred nameSMC6
KEGG koko:K12614,ko:K15014
KEGG TC2.A.57.1
KEGG Pathwayko03018,map03018
KEGG ModuleM00395
GOsGO:0000228,GO:0000722,GO:0000723,GO:0000724,GO:0000725,GO:0000781,GO:0000793,GO:0000794,GO:0000803,GO:0001674,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003697,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006312,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007568,GO:0007569,GO:0008094,GO:0008150,GO:0008152,GO:0009410,GO:0009987,GO:0010033,GO:0010243,GO:0014070,GO:0014074,GO:0016043,GO:0016462,GO:0016604,GO:0016605,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019899,GO:0022402,GO:0030915,GO:0031000,GO:0031625,GO:0031974,GO:0031981,GO:0032200,GO:0032502,GO:0032991,GO:0033554,GO:0033676,GO:0034641,GO:0035061,GO:0035861,GO:0036270,GO:0042221,GO:0042493,GO:0042585,GO:0042592,GO:0042623,GO:0043073,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043279,GO:0044237,GO:0044238,GO:0044260,GO:0044389,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0048518,GO:0048522,GO:0048869,GO:0050000,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051276,GO:0051304,GO:0051640,GO:0051641,GO:0051716,GO:0051983,GO:0051984,GO:0060249,GO:0065007,GO:0065008,GO:0070013,GO:0071139,GO:0071704,GO:0071840,GO:0090304,GO:0090398,GO:0090734,GO:0097159,GO:0097240,GO:0098687,GO:0106068,GO:1901360,GO:1901363,GO:1901698,GO:1902494,GO:1990234,GO:1990683
EggNOG free text desc.double-strand break repair via homologous recombination
EggNOG OGsCOG1196@1,KOG0250@2759
EC3.6.4.13
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko02000,ko03019,ko03036
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionRecF/RecN/SMC, N-terminal
Ec32 orthologEc-07_000070.1
Exons1
Model size132
Cds size132
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929743.538912-CDS-H-elongata_contig125688:1536..16681622929743.538912-CDS-H-elongata_contig125688:1536..1668Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig125688 1537..1668 -
1691679140.2392578-CDS-H-elongata_contig125688:1536..16681691679140.2392578-CDS-H-elongata_contig125688:1536..1668Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig125688 1537..1668 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig125688.1916.1prot_H-elongata_contig125688.1916.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig125688 1537..1668 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig125688.1916.1

>prot_H-elongata_contig125688.1916.1 ID=prot_H-elongata_contig125688.1916.1|Name=mRNA_H-elongata_contig125688.1916.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=44bp
RNVNFISGRNGSGKSAILAALQICLGANAHSTHRARKLSDFIR*
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mRNA from alignment at H-elongata_contig125688:1537..1668-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig125688.1916.1 ID=mRNA_H-elongata_contig125688.1916.1|Name=mRNA_H-elongata_contig125688.1916.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=132bp|location=Sequence derived from alignment at H-elongata_contig125688:1537..1668- (Himanthalia elongata Himel1 dioecious)
AGAAACGTAAACTTCATCAGCGGCAGAAACGGTTCTGGCAAGTCTGCAAT
TCTCGCCGCGTTGCAGATCTGCCTTGGAGCCAACGCGCACTCCACCCACA
GGGCCAGGAAGCTCTCGGACTTCATCAGGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig125688:1537..1668-

>mRNA_H-elongata_contig125688.1916.1 ID=mRNA_H-elongata_contig125688.1916.1|Name=mRNA_H-elongata_contig125688.1916.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=264bp|location=Sequence derived from alignment at H-elongata_contig125688:1537..1668- (Himanthalia elongata Himel1 dioecious)
AGAAACGTAAACTTCATCAGCGGCAGAAACGGTTCTGGCAAGTCTGCAAT
TCTCGCCGCGTTGCAGATCTGCCTTGGAGCCAACGCGCACTCCACCCACA
GGGCCAGGAAGCTCTCGGACTTCATCAGGTAGAGAAACGTAAACTTCATC
AGCGGCAGAAACGGTTCTGGCAAGTCTGCAATTCTCGCCGCGTTGCAGAT
CTGCCTTGGAGCCAACGCGCACTCCACCCACAGGGCCAGGAAGCTCTCGG
ACTTCATCAGGTAG
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