mRNA_H-elongata_contig125620.1914.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig125620.1914.1
Unique NamemRNA_H-elongata_contig125620.1914.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig125620.1914.1 vs. uniprot
Match: D7FQZ0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQZ0_ECTSI)

HSP 1 Score: 241 bits (614), Expect = 4.450e-72
Identity = 120/125 (96.00%), Postives = 122/125 (97.60%), Query Frame = 1 
Query:    1 YSDLGGISGVLQEVRELIEYPLVHPEVYAHLGIEPPRGILLHGPPGCGKTLLANAIAGELGVAFLRISAPEIVSGMSGESEQKVRELFRAAIENAPCIVFVDEVDAITPKRETSSRGMEKRIVAQ 375
            Y DLGGIS +LQEVRELIEYPLVHPEVYAHLGIEPPRGILLHGPPGCGKTLLANAIAGEL VAFLRISAPEIVSGMSGESEQKVRELFRAAIENAPCIVF+DEVDAITPKRETSSRGMEKRIVAQ
Sbjct:  263 YDDLGGISEILQEVRELIEYPLVHPEVYAHLGIEPPRGILLHGPPGCGKTLLANAIAGELDVAFLRISAPEIVSGMSGESEQKVRELFRAAIENAPCIVFMDEVDAITPKRETSSRGMEKRIVAQ 387
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BLAST of mRNA_H-elongata_contig125620.1914.1 vs. uniprot
Match: A0A397ERQ0_9STRA (AAA domain-containing protein (Fragment) n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397ERQ0_9STRA)

HSP 1 Score: 211 bits (538), Expect = 1.120e-64
Identity = 99/125 (79.20%), Postives = 112/125 (89.60%), Query Frame = 1 
Query:    1 YSDLGGISGVLQEVRELIEYPLVHPEVYAHLGIEPPRGILLHGPPGCGKTLLANAIAGELGVAFLRISAPEIVSGMSGESEQKVRELFRAAIENAPCIVFVDEVDAITPKRETSSRGMEKRIVAQ 375
            Y+D GGI+ +L+EV+ELIEYPL HPE+Y HLG+EPPRGILLHGPPG GKT+LANAIAGE G  FL++SAPEIVSGMSGESEQKVRELF  AI NAP I+F+DE+DAITPKRE SSRGMEKRIVAQ
Sbjct:  136 YTDFGGINSILKEVQELIEYPLTHPEIYTHLGVEPPRGILLHGPPGTGKTMLANAIAGESGACFLKVSAPEIVSGMSGESEQKVRELFEQAIANAPSIIFIDEIDAITPKRENSSRGMEKRIVAQ 260
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BLAST of mRNA_H-elongata_contig125620.1914.1 vs. uniprot
Match: A0A662XMK4_9STRA (AAA domain-containing protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XMK4_9STRA)

HSP 1 Score: 207 bits (528), Expect = 1.420e-64
Identity = 99/125 (79.20%), Postives = 110/125 (88.00%), Query Frame = 1 
Query:    1 YSDLGGISGVLQEVRELIEYPLVHPEVYAHLGIEPPRGILLHGPPGCGKTLLANAIAGELGVAFLRISAPEIVSGMSGESEQKVRELFRAAIENAPCIVFVDEVDAITPKRETSSRGMEKRIVAQ 375
            YSD GGI  VLQEVRELIEYPL HPEVYAHLG+EPPRG+LLHGPPG GK++LA+AIAGE G  FL+ISAPE+VSGMSGESEQK+R LF  A+  AP IVF+DE+DAITPKRETS RGMEKRIVAQ
Sbjct:  171 YSDFGGIHAVLQEVRELIEYPLTHPEVYAHLGVEPPRGVLLHGPPGTGKSMLAHAIAGECGATFLKISAPEVVSGMSGESEQKLRALFDEAVARAPSIVFIDEIDAITPKRETSQRGMEKRIVAQ 295
[Close]
BLAST of mRNA_H-elongata_contig125620.1914.1 vs. uniprot
Match: K3WFD0_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WFD0_GLOUD)

HSP 1 Score: 216 bits (550), Expect = 7.280e-64
Identity = 104/125 (83.20%), Postives = 112/125 (89.60%), Query Frame = 1 
Query:    1 YSDLGGISGVLQEVRELIEYPLVHPEVYAHLGIEPPRGILLHGPPGCGKTLLANAIAGELGVAFLRISAPEIVSGMSGESEQKVRELFRAAIENAPCIVFVDEVDAITPKRETSSRGMEKRIVAQ 375
            YSD GGI  +LQEV+ELIEYPL HPEVYAHLG+EPPRGILLHGPPG GKT+LANAIAGE G  FLRISAPEIVSGMSGESEQK+RELF  AI NAP I+F+DE+DAITPKRETS RGMEKRIVAQ
Sbjct:  133 YSDFGGIQAILQEVKELIEYPLTHPEVYAHLGVEPPRGILLHGPPGTGKTMLANAIAGESGACFLRISAPEIVSGMSGESEQKLRELFDEAIANAPSIIFIDEIDAITPKRETSQRGMEKRIVAQ 257
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BLAST of mRNA_H-elongata_contig125620.1914.1 vs. uniprot
Match: A0A067BRJ4_SAPPC (Uncharacterized protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067BRJ4_SAPPC)

HSP 1 Score: 213 bits (541), Expect = 1.260e-63
Identity = 100/125 (80.00%), Postives = 113/125 (90.40%), Query Frame = 1 
Query:    1 YSDLGGISGVLQEVRELIEYPLVHPEVYAHLGIEPPRGILLHGPPGCGKTLLANAIAGELGVAFLRISAPEIVSGMSGESEQKVRELFRAAIENAPCIVFVDEVDAITPKRETSSRGMEKRIVAQ 375
            YSD+GGI  +L+EV+ELIEYPL HPE+Y HLG+EPPRGILLHGPPG GKT+LANAIAGE G  FL++SAPEIVSGMSGESEQKVR+LF  AI NAP I+F+DE+DAITPKRETSSRGMEKRIVAQ
Sbjct:   18 YSDVGGIQAILKEVQELIEYPLTHPEIYTHLGVEPPRGILLHGPPGTGKTMLANAIAGESGACFLKVSAPEIVSGMSGESEQKVRDLFDQAIANAPSIIFIDEIDAITPKRETSSRGMEKRIVAQ 142
[Close]
BLAST of mRNA_H-elongata_contig125620.1914.1 vs. uniprot
Match: A0A2D4BYX5_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BYX5_PYTIN)

HSP 1 Score: 215 bits (547), Expect = 3.180e-63
Identity = 102/125 (81.60%), Postives = 112/125 (89.60%), Query Frame = 1 
Query:    1 YSDLGGISGVLQEVRELIEYPLVHPEVYAHLGIEPPRGILLHGPPGCGKTLLANAIAGELGVAFLRISAPEIVSGMSGESEQKVRELFRAAIENAPCIVFVDEVDAITPKRETSSRGMEKRIVAQ 375
            YSD GG+  +LQEV+ELIEYPL HPEVY HLG+EPPRGILLHGPPG GKT+LANAIAGE G +FLRISAPEIVSGMSGESEQKVR+LF  AI NAP I+F+DE+DAITPKRETS RGMEKRIVAQ
Sbjct:  171 YSDFGGVEAILQEVKELIEYPLTHPEVYMHLGVEPPRGILLHGPPGTGKTMLANAIAGESGASFLRISAPEIVSGMSGESEQKVRDLFEEAIANAPSIIFIDEIDAITPKRETSQRGMEKRIVAQ 295
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BLAST of mRNA_H-elongata_contig125620.1914.1 vs. uniprot
Match: F0WFI7_9STRA (Ribosome biogenesis ATPase RIX7 putative n=2 Tax=Albugo TaxID=65356 RepID=F0WFI7_9STRA)

HSP 1 Score: 214 bits (544), Expect = 5.310e-63
Identity = 101/125 (80.80%), Postives = 113/125 (90.40%), Query Frame = 1 
Query:    1 YSDLGGISGVLQEVRELIEYPLVHPEVYAHLGIEPPRGILLHGPPGCGKTLLANAIAGELGVAFLRISAPEIVSGMSGESEQKVRELFRAAIENAPCIVFVDEVDAITPKRETSSRGMEKRIVAQ 375
            YSD GGI  +LQEV+ELIEYPL HPEVY HLG+EPPRGILLHGPPG GKT+LAN+IAGE G AF+RISAPEIVSGMSGESEQKVRELF+ A++NAP IVF+DE+DAITPKRET  RGME+RIVAQ
Sbjct:  158 YSDFGGIHSILQEVKELIEYPLTHPEVYVHLGVEPPRGILLHGPPGTGKTMLANSIAGESGAAFIRISAPEIVSGMSGESEQKVRELFQEAVKNAPAIVFIDEIDAITPKRETVQRGMERRIVAQ 282
[Close]
BLAST of mRNA_H-elongata_contig125620.1914.1 vs. uniprot
Match: W7U2G0_9STRA (Aaa atpase n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U2G0_9STRA)

HSP 1 Score: 212 bits (539), Expect = 5.410e-63
Identity = 100/125 (80.00%), Postives = 116/125 (92.80%), Query Frame = 1 
Query:    1 YSDLGGISGVLQEVRELIEYPLVHPEVYAHLGIEPPRGILLHGPPGCGKTLLANAIAGELGVAFLRISAPEIVSGMSGESEQKVRELFRAAIENAPCIVFVDEVDAITPKRETSSRGMEKRIVAQ 375
            ++DL GI  VLQ+VRELIEYPL +PEVYA+LG+EPPRGILLHGPPGCGKTLLANA+AGELGVAFL++SAPE+VSGMSGESEQK+RELF  A + AP +VF+DEVDAITPKRET+SRGME+RIVAQ
Sbjct:   58 FTDLAGIDAVLQDVRELIEYPLKYPEVYAYLGVEPPRGILLHGPPGCGKTLLANAVAGELGVAFLKVSAPEVVSGMSGESEQKIRELFATARQAAPALVFIDEVDAITPKRETASRGMERRIVAQ 182
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BLAST of mRNA_H-elongata_contig125620.1914.1 vs. uniprot
Match: A0A8K1C7Y3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C7Y3_PYTOL)

HSP 1 Score: 214 bits (544), Expect = 6.590e-63
Identity = 102/125 (81.60%), Postives = 111/125 (88.80%), Query Frame = 1 
Query:    1 YSDLGGISGVLQEVRELIEYPLVHPEVYAHLGIEPPRGILLHGPPGCGKTLLANAIAGELGVAFLRISAPEIVSGMSGESEQKVRELFRAAIENAPCIVFVDEVDAITPKRETSSRGMEKRIVAQ 375
            YSD GGI  +LQEV+ELIEYPL HPEVY HLG+EPPRGILLHGPPG GKT+LANAIAGE G  FLR+SAPEIVSGMSGESEQK+RELF  AI NAP I+F+DE+DAITPKRETS RGMEKRIVAQ
Sbjct:  169 YSDFGGIGTILQEVKELIEYPLTHPEVYMHLGVEPPRGILLHGPPGTGKTMLANAIAGESGACFLRVSAPEIVSGMSGESEQKLRELFEEAIANAPSIIFIDEIDAITPKRETSQRGMEKRIVAQ 293
[Close]
BLAST of mRNA_H-elongata_contig125620.1914.1 vs. uniprot
Match: A0A662XK02_9STRA (AAA domain-containing protein (Fragment) n=3 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XK02_9STRA)

HSP 1 Score: 207 bits (528), Expect = 1.510e-62
Identity = 99/125 (79.20%), Postives = 110/125 (88.00%), Query Frame = 1 
Query:    1 YSDLGGISGVLQEVRELIEYPLVHPEVYAHLGIEPPRGILLHGPPGCGKTLLANAIAGELGVAFLRISAPEIVSGMSGESEQKVRELFRAAIENAPCIVFVDEVDAITPKRETSSRGMEKRIVAQ 375
            YSD GGI  VLQEVRELIEYPL HPEVYAHLG+EPPRG+LLHGPPG GK++LA+AIAGE G  FL+ISAPE+VSGMSGESEQK+R LF  A+  AP IVF+DE+DAITPKRETS RGMEKRIVAQ
Sbjct:  177 YSDFGGIHAVLQEVRELIEYPLTHPEVYAHLGVEPPRGVLLHGPPGTGKSMLAHAIAGECGATFLKISAPEVVSGMSGESEQKLRALFDEAVARAPSIVFIDEIDAITPKRETSQRGMEKRIVAQ 301
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig125620.1914.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQZ0_ECTSI4.450e-7296.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A397ERQ0_9STRA1.120e-6479.20AAA domain-containing protein (Fragment) n=2 Tax=A... [more]
A0A662XMK4_9STRA1.420e-6479.20AAA domain-containing protein (Fragment) n=2 Tax=N... [more]
K3WFD0_GLOUD7.280e-6483.20Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A067BRJ4_SAPPC1.260e-6380.00Uncharacterized protein n=3 Tax=Saprolegniaceae Ta... [more]
A0A2D4BYX5_PYTIN3.180e-6381.60Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
F0WFI7_9STRA5.310e-6380.80Ribosome biogenesis ATPase RIX7 putative n=2 Tax=A... [more]
W7U2G0_9STRA5.410e-6380.00Aaa atpase n=2 Tax=Nannochloropsis gaditana TaxID=... [more]
A0A8K1C7Y3_PYTOL6.590e-6381.60Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A662XK02_9STRA1.510e-6279.20AAA domain-containing protein (Fragment) n=3 Tax=N... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig125620contigH-elongata_contig125620:390..1291 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score243.8
Seed ortholog evalue4.2e-62
Seed eggNOG ortholog2880.D7FQZ0
KEGG koko:K14571
KEGG Pathwayko03008,map03008
GOsGO:0000166,GO:0000502,GO:0000731,GO:0002020,GO:0002082,GO:0003674,GO:0003824,GO:0005102,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005783,GO:0005789,GO:0005811,GO:0005829,GO:0006139,GO:0006140,GO:0006163,GO:0006259,GO:0006281,GO:0006301,GO:0006302,GO:0006464,GO:0006486,GO:0006487,GO:0006508,GO:0006511,GO:0006515,GO:0006725,GO:0006732,GO:0006733,GO:0006734,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006886,GO:0006888,GO:0006914,GO:0006919,GO:0006950,GO:0006974,GO:0007034,GO:0007041,GO:0008047,GO:0008104,GO:0008144,GO:0008150,GO:0008152,GO:0008333,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009109,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009166,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009889,GO:0009891,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0010562,GO:0010604,GO:0010646,GO:0010647,GO:0010918,GO:0010941,GO:0010942,GO:0010950,GO:0010952,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016032,GO:0016043,GO:0016192,GO:0016197,GO:0016236,GO:0016462,GO:0016504,GO:0016567,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0017144,GO:0018130,GO:0018193,GO:0018196,GO:0018279,GO:0019058,GO:0019079,GO:0019219,GO:0019220,GO:0019222,GO:0019362,GO:0019438,GO:0019439,GO:0019538,GO:0019637,GO:0019674,GO:0019693,GO:0019899,GO:0019902,GO:0019903,GO:0019904,GO:0019941,GO:0019985,GO:0022411,GO:0022607,GO:0023051,GO:0023056,GO:0030111,GO:0030162,GO:0030163,GO:0030177,GO:0030234,GO:0030433,GO:0030554,GO:0030808,GO:0030810,GO:0030970,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031331,GO:0031334,GO:0031399,GO:0031401,GO:0031593,GO:0031625,GO:0031974,GO:0031981,GO:0031984,GO:0032268,GO:0032270,GO:0032434,GO:0032436,GO:0032446,GO:0032509,GO:0032510,GO:0032527,GO:0032553,GO:0032555,GO:0032559,GO:0032984,GO:0032991,GO:0033036,GO:0033554,GO:0034098,GO:0034214,GO:0034404,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0034976,GO:0035639,GO:0035800,GO:0035861,GO:0035966,GO:0035967,GO:0036094,GO:0036211,GO:0036435,GO:0036503,GO:0036513,GO:0042175,GO:0042176,GO:0042221,GO:0042287,GO:0042288,GO:0042325,GO:0042327,GO:0042391,GO:0042726,GO:0042728,GO:0042802,GO:0042886,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043161,GO:0043167,GO:0043168,GO:0043170,GO:0043209,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043280,GO:0043281,GO:0043412,GO:0043413,GO:0043457,GO:0043467,GO:0043531,GO:0043632,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044389,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044427,GO:0044428,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045184,GO:0045732,GO:0045838,GO:0045862,GO:0045935,GO:0045937,GO:0045981,GO:0046034,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046907,GO:0048193,GO:0048471,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051186,GO:0051187,GO:0051234,GO:0051246,GO:0051247,GO:0051259,GO:0051260,GO:0051336,GO:0051345,GO:0051603,GO:0051641,GO:0051649,GO:0051704,GO:0051716,GO:0051788,GO:0051881,GO:0052547,GO:0052548,GO:0055086,GO:0060255,GO:0060828,GO:0061134,GO:0061136,GO:0061857,GO:0061919,GO:0062012,GO:0062013,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070085,GO:0070647,GO:0070727,GO:0070841,GO:0070842,GO:0070887,GO:0071218,GO:0071310,GO:0071702,GO:0071704,GO:0071705,GO:0071712,GO:0071840,GO:0071897,GO:0071985,GO:0072387,GO:0072389,GO:0072521,GO:0072524,GO:0080090,GO:0090085,GO:0090263,GO:0090304,GO:0090734,GO:0097159,GO:0097352,GO:0097367,GO:0098772,GO:0098796,GO:0098827,GO:0140030,GO:1900371,GO:1900373,GO:1900542,GO:1900544,GO:1901135,GO:1901137,GO:1901265,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901698,GO:1901800,GO:1902494,GO:1903003,GO:1903004,GO:1903006,GO:1903007,GO:1903050,GO:1903052,GO:1903320,GO:1903322,GO:1903362,GO:1903364,GO:1903513,GO:1903578,GO:1903580,GO:1903715,GO:1903862,GO:1904288,GO:1904949,GO:1905368,GO:1905369,GO:1990381,GO:1990730,GO:2000058,GO:2000060,GO:2000116,GO:2000152,GO:2000158,GO:2001056,GO:2001169,GO:2001171
EggNOG free text desc.preribosome binding
EggNOG OGsCOG0464@1,KOG0733@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Hectar predicted targeting categoryother localisation
Exons3
Model size377
Cds size375
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig125620.1914.1prot_H-elongata_contig125620.1914.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig125620 390..1291 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929742.275548-CDS-H-elongata_contig125620:389..5151622929742.275548-CDS-H-elongata_contig125620:389..515Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig125620 390..515 -
1691679140.1719193-CDS-H-elongata_contig125620:389..5151691679140.1719193-CDS-H-elongata_contig125620:389..515Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig125620 390..515 -
1622929742.2908578-CDS-H-elongata_contig125620:720..8641622929742.2908578-CDS-H-elongata_contig125620:720..864Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig125620 721..864 -
1691679140.1950154-CDS-H-elongata_contig125620:720..8641691679140.1950154-CDS-H-elongata_contig125620:720..864Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig125620 721..864 -
1622929742.3059382-CDS-H-elongata_contig125620:1186..12911622929742.3059382-CDS-H-elongata_contig125620:1186..1291Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig125620 1187..1291 -
1691679140.2049565-CDS-H-elongata_contig125620:1186..12911691679140.2049565-CDS-H-elongata_contig125620:1186..1291Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig125620 1187..1291 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig125620.1914.1

>prot_H-elongata_contig125620.1914.1 ID=prot_H-elongata_contig125620.1914.1|Name=mRNA_H-elongata_contig125620.1914.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=125bp
YSDLGGISGVLQEVRELIEYPLVHPEVYAHLGIEPPRGILLHGPPGCGKT
LLANAIAGELGVAFLRISAPEIVSGMSGESEQKVRELFRAAIENAPCIVF
VDEVDAITPKRETSSRGMEKRIVAQ
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mRNA from alignment at H-elongata_contig125620:390..1291-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig125620.1914.1 ID=mRNA_H-elongata_contig125620.1914.1|Name=mRNA_H-elongata_contig125620.1914.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=902bp|location=Sequence derived from alignment at H-elongata_contig125620:390..1291- (Himanthalia elongata Himel1 dioecious)
TACAGCGACCTCGGAGGAATATCGGGAGTTTTGCAGGAGGTACGAGAGCT
GATCGAGTACCCCCTGGTCCACCCGGAAGTCTACGCGCACCTGGGGATAG
AGCCGGTAACCGCAAACGCCTCTCTGTAATAATCGCATACATAAATGAAG
AGGAAGATGCACATTGTTTTTTGGAAGAAGCACGAACAACAAATCGTGGC
GGGAACGAGAGCCGCATATGCCTCTTTTGATCTTGGGCAGACAAACAGAC
AGACAAACAGGCCTCTCTGCGTGCGGATGTTCCCGTTCAGCAGACTTTTC
GGACAAAGAATTATTCGAAATGTCGGCCTTTTGGTCCTGGTCCTTCTTCG
ACACTGTCCTCCGACCCCCCACCCCACTCCAATCGAGGCTTCCCTTGTTT
TTTATTTGGGGTGGTTTTTGGACGCAGCCCCGGGGTATCCTTCTCCACGG
TCCTCCAGGGTGTGGGAAAACCCTCTTGGCGAATGCCATCGCGGGAGAGC
TTGGGGTAGCCTTTCTCAGGATCTCGGCGCCAGAGATTGTCAGCGGGATG
TCGGGAGAGTCAGAACAGAAGGTGAGAGGAGATGATAAAGGGGATATCAA
TGGAGTATCCCCGGGTTTCTGAAACACTAGGGGGATATAGAAGAGGGGGG
TACCCGAGCGCACGCCGCACACCACACATGAATATATACGTGAGCTTCTT
ACTCTGTTCTAAAAATAGTTTTCAACTCTATTTTATAGTTGAACAAATGA
AAGGCGTACCTACACGCGCGCGGAAGGTGAGGGAGCTGTTTCGAGCGGCG
ATCGAGAACGCTCCTTGCATCGTGTTCGTGGACGAGGTGGATGCTATCAC
CCCTAAGAGGGAGACTTCTTCGAGGGGTATGGAGAAACGCATCGTCGCGC
AG
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Coding sequence (CDS) from alignment at H-elongata_contig125620:390..1291-

>mRNA_H-elongata_contig125620.1914.1 ID=mRNA_H-elongata_contig125620.1914.1|Name=mRNA_H-elongata_contig125620.1914.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=750bp|location=Sequence derived from alignment at H-elongata_contig125620:390..1291- (Himanthalia elongata Himel1 dioecious)
TACAGCGACCTCGGAGGAATATCGGGAGTTTTGCAGGAGGTACGAGAGCT
GATCGAGTACCCCCTGGTCCACCCGGAAGTCTACGCGCACCTGGGGATAG
AGCCGTACAGCGACCTCGGAGGAATATCGGGAGTTTTGCAGGAGGTACGA
GAGCTGATCGAGTACCCCCTGGTCCACCCGGAAGTCTACGCGCACCTGGG
GATAGAGCCGCCCCGGGGTATCCTTCTCCACGGTCCTCCAGGGTGTGGGA
AAACCCTCTTGGCGAATGCCATCGCGGGAGAGCTTGGGGTAGCCTTTCTC
AGGATCTCGGCGCCAGAGATTGTCAGCGGGATGTCGGGAGAGTCAGAACA
GAAGCCCCGGGGTATCCTTCTCCACGGTCCTCCAGGGTGTGGGAAAACCC
TCTTGGCGAATGCCATCGCGGGAGAGCTTGGGGTAGCCTTTCTCAGGATC
TCGGCGCCAGAGATTGTCAGCGGGATGTCGGGAGAGTCAGAACAGAAGGT
GAGGGAGCTGTTTCGAGCGGCGATCGAGAACGCTCCTTGCATCGTGTTCG
TGGACGAGGTGGATGCTATCACCCCTAAGAGGGAGACTTCTTCGAGGGGT
ATGGAGAAACGCATCGTCGCGCAGGTGAGGGAGCTGTTTCGAGCGGCGAT
CGAGAACGCTCCTTGCATCGTGTTCGTGGACGAGGTGGATGCTATCACCC
CTAAGAGGGAGACTTCTTCGAGGGGTATGGAGAAACGCATCGTCGCGCAG
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