mRNA_H-elongata_contig125586.1912.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig125586.1912.1
Unique NamemRNA_H-elongata_contig125586.1912.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig125586.1912.1 vs. uniprot
Match: A0A6H5KGL5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGL5_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 1.650e-18
Identity = 37/48 (77.08%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:    1 VWDWTAPRRPARVHCAGGVDPCLLYHARLWGRTLGELRVACGTAFNQV 144
            VWDW    RP R+H A G DPCLLYHARLWGR LGELRVA GTAFNQV
Sbjct:  198 VWDWAGQARPLRIHQAQGGDPCLLYHARLWGRALGELRVAAGTAFNQV 245
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BLAST of mRNA_H-elongata_contig125586.1912.1 vs. uniprot
Match: D8LMQ4_ECTSI (Nucleotide binding protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMQ4_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 7.830e-18
Identity = 36/48 (75.00%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:    1 VWDWTAPRRPARVHCAGGVDPCLLYHARLWGRTLGELRVACGTAFNQV 144
            VW+W    RP R+H A G DPCLLYHARLWGR LGELRVA GTAFNQV
Sbjct:  195 VWNWAGQARPLRIHRAQGGDPCLLYHARLWGRALGELRVAAGTAFNQV 242
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig125586.1912.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KGL5_9PHAE1.650e-1877.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LMQ4_ECTSI7.830e-1875.00Nucleotide binding protein, putative n=1 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig125586contigH-elongata_contig125586:1508..1651 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.1
Seed ortholog evalue9.6e-15
Seed eggNOG ortholog2880.D8LMQ4
EggNOG free text desc.cell cycle
EggNOG OGsKOG0974@1,KOG0974@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size144
Cds size144
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929742.0427032-CDS-H-elongata_contig125586:1507..16511622929742.0427032-CDS-H-elongata_contig125586:1507..1651Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig125586 1508..1651 -
1691679140.065376-CDS-H-elongata_contig125586:1507..16511691679140.065376-CDS-H-elongata_contig125586:1507..1651Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig125586 1508..1651 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig125586.1912.1prot_H-elongata_contig125586.1912.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig125586 1508..1651 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig125586.1912.1

>prot_H-elongata_contig125586.1912.1 ID=prot_H-elongata_contig125586.1912.1|Name=mRNA_H-elongata_contig125586.1912.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=48bp
VWDWTAPRRPARVHCAGGVDPCLLYHARLWGRTLGELRVACGTAFNQV
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mRNA from alignment at H-elongata_contig125586:1508..1651-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig125586.1912.1 ID=mRNA_H-elongata_contig125586.1912.1|Name=mRNA_H-elongata_contig125586.1912.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=144bp|location=Sequence derived from alignment at H-elongata_contig125586:1508..1651- (Himanthalia elongata Himel1 dioecious)
GTATGGGACTGGACAGCACCGAGGCGGCCCGCGCGGGTGCATTGCGCTGG
TGGCGTCGATCCGTGCCTCCTCTACCACGCGCGCCTCTGGGGCAGAACGC
TGGGCGAACTCCGCGTTGCGTGTGGGACAGCGTTTAATCAGGTA
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Coding sequence (CDS) from alignment at H-elongata_contig125586:1508..1651-

>mRNA_H-elongata_contig125586.1912.1 ID=mRNA_H-elongata_contig125586.1912.1|Name=mRNA_H-elongata_contig125586.1912.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=288bp|location=Sequence derived from alignment at H-elongata_contig125586:1508..1651- (Himanthalia elongata Himel1 dioecious)
GTATGGGACTGGACAGCACCGAGGCGGCCCGCGCGGGTGCATTGCGCTGG
TGGCGTCGATCCGTGCCTCCTCTACCACGCGCGCCTCTGGGGCAGAACGC
TGGGCGAACTCCGCGTTGCGTGTGGGACAGCGTTTAATCAGGTAGTATGG
GACTGGACAGCACCGAGGCGGCCCGCGCGGGTGCATTGCGCTGGTGGCGT
CGATCCGTGCCTCCTCTACCACGCGCGCCTCTGGGGCAGAACGCTGGGCG
AACTCCGCGTTGCGTGTGGGACAGCGTTTAATCAGGTA
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