mRNA_H-elongata_contig125503.1907.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig125503.1907.1
Unique NamemRNA_H-elongata_contig125503.1907.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig125503.1907.1 vs. uniprot
Match: D8LRN9_ECTSI (Rubredoxin-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRN9_ECTSI)

HSP 1 Score: 150 bits (380), Expect = 1.280e-41
Identity = 73/92 (79.35%), Postives = 80/92 (86.96%), Query Frame = 1 
Query:    4 TGGPGTNDEESDPDAAQALQQLNADMEAKKTEPQDEKDPEPEGTAKSYECQVCGYKMFVAKGREFKFFGDNFKCPECGAGKNKFTEAEMDDD 279
            TGGP T D ESDP+AA+AL  +  DM AKKTEPQDEK+PE EGTAK+YEC VCGYKMFVAKGREFKFFGD+FKCPECGAGKNKF E+ MDDD
Sbjct:  374 TGGPPTGDAESDPEAAKALAAMEEDMAAKKTEPQDEKEPEAEGTAKAYECTVCGYKMFVAKGREFKFFGDDFKCPECGAGKNKFLESSMDDD 465
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BLAST of mRNA_H-elongata_contig125503.1907.1 vs. uniprot
Match: A0A835Z4L2_9STRA (Rubredoxin-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4L2_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 1.280e-15
Identity = 32/45 (71.11%), Postives = 39/45 (86.67%), Query Frame = 1 
Query:  127 EGTAKSYECQVCGYKMFVAKGREFKFFGDNFKCPECGAGKNKFTE 261
            EGTA+++EC  CGY ++VAKGRE+KFFGD+FKCPECGA K KF E
Sbjct:  281 EGTARAFECGSCGYTLYVAKGREWKFFGDDFKCPECGASKGKFQE 325
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BLAST of mRNA_H-elongata_contig125503.1907.1 vs. uniprot
Match: L1IPJ7_GUITC (Rubredoxin-like domain-containing protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1IPJ7_GUITC)

HSP 1 Score: 79.0 bits (193), Expect = 3.930e-15
Identity = 39/61 (63.93%), Postives = 45/61 (73.77%), Query Frame = 1 
Query:   91 KTEPQDEKDPEP----EGTAKSYECQVCGYKMFVAKGREFKFFGDNFKCPECGAGKNKFTE 261
            KT  ++ K  EP    EGT + YEC VCGY +FVAKGREFKFFGDNFKCP+CGAGK  F +
Sbjct:  371 KTHGEEPKKDEPVQRAEGTHE-YECTVCGYTLFVAKGREFKFFGDNFKCPQCGAGKQYFKD 430
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BLAST of mRNA_H-elongata_contig125503.1907.1 vs. uniprot
Match: A0A7S2XMQ9_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XMQ9_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 5.830e-15
Identity = 32/47 (68.09%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:  133 TAKSYECQVCGYKMFVAKGREFKFFGDNFKCPECGAGKNKFTEAEMD 273
            T+ ++EC  CG+ +FVAKGREFKFFGDNFKCPECGAGK+KF     D
Sbjct:  445 TSNAFECGECGFTIFVAKGREFKFFGDNFKCPECGAGKDKFVGRSDD 491
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BLAST of mRNA_H-elongata_contig125503.1907.1 vs. uniprot
Match: A0A7S0NDR1_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0NDR1_9CRYP)

HSP 1 Score: 76.6 bits (187), Expect = 1.140e-14
Identity = 38/61 (62.30%), Postives = 44/61 (72.13%), Query Frame = 1 
Query:   91 KTEPQDEKDPEP----EGTAKSYECQVCGYKMFVAKGREFKFFGDNFKCPECGAGKNKFTE 261
            KT  ++ K  EP    EGT + YEC VCGY +FVAKGREFKFFGDNFKCP+CGA K  F +
Sbjct:  224 KTHGEEPKKDEPVQRAEGTHE-YECTVCGYTLFVAKGREFKFFGDNFKCPQCGASKQYFKD 283
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BLAST of mRNA_H-elongata_contig125503.1907.1 vs. uniprot
Match: A0A8J6CDY1_DIALT (Rubredoxin-like domain-containing protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CDY1_DIALT)

HSP 1 Score: 75.1 bits (183), Expect = 8.720e-14
Identity = 33/62 (53.23%), Postives = 42/62 (67.74%), Query Frame = 1 
Query:   88 KKTEPQDEKDPEPEGTAKSYECQVCGYKMFVAKGREFKFFGDNFKCPECGAGKNKFTEAEMD 273
            K TEP+           K+ EC  CGY +F A GREFKFFGD+FKCP+CGAGK+ FT+A+ +
Sbjct:  347 KPTEPEPAPPATEPAAGKALECSNCGYTLFPAAGREFKFFGDDFKCPQCGAGKDAFTDAKTE 408
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BLAST of mRNA_H-elongata_contig125503.1907.1 vs. uniprot
Match: A0A448YYL6_9STRA (Rubredoxin-like domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YYL6_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 4.510e-13
Identity = 33/53 (62.26%), Postives = 38/53 (71.70%), Query Frame = 1 
Query:  121 EPEGTAKSY-ECQVCGYKMFVAKGREFKFFGDNFKCPECGAGKNKFTEAEMDD 276
            EPE  A +  EC  C Y +F+AKGRE KFFGDNFKCPECGA K+KF   +M D
Sbjct:  399 EPEKPASNVMECTECSYTLFIAKGREAKFFGDNFKCPECGADKDKFEPKDMSD 451
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BLAST of mRNA_H-elongata_contig125503.1907.1 vs. uniprot
Match: A0A7S0YQJ8_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0YQJ8_9CRYP)

HSP 1 Score: 72.8 bits (177), Expect = 6.180e-13
Identity = 32/58 (55.17%), Postives = 39/58 (67.24%), Query Frame = 1 
Query:  100 PQDEKDPEPEGTAKSYECQVCGYKMFVAKGREFKFFGDNFKCPECGAGKNKFTEAEMD 273
            P+D    E E  A  YEC  CGY +FVAKGREFKF+GD+FKC  CGAGK  F +  ++
Sbjct:  395 PEDPPPEEREEGAHEYECTKCGYTLFVAKGREFKFYGDDFKCAGCGAGKEAFKDNSLE 452
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BLAST of mRNA_H-elongata_contig125503.1907.1 vs. uniprot
Match: A0A7S0THQ3_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0THQ3_HEMAN)

HSP 1 Score: 70.1 bits (170), Expect = 5.540e-12
Identity = 33/60 (55.00%), Postives = 39/60 (65.00%), Query Frame = 1 
Query:  106 DEKDPEP-----EGTAKSYECQVCGYKMFVAKGREFKFFGDNFKCPECGAGKNKFTEAEM 270
            D KD EP     E  A  YEC  CG+ +FVAKGREFKF+GD+FKC  CGAGK  F +  +
Sbjct:  400 DGKDSEPAPEEREEGAHEYECTKCGFTLFVAKGREFKFYGDDFKCQGCGAGKEDFKDNSL 459
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BLAST of mRNA_H-elongata_contig125503.1907.1 vs. uniprot
Match: A0A1E7FDG3_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FDG3_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 1.030e-11
Identity = 28/55 (50.91%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:  115 DPEPEGTAKSYECQVCGYKMFVAKGREFKFFGDNFKCPECGAGKNKFTEAEMDDD 279
            D E + T+    CQ CG+ +F+AKGRE KFFG+ F CPECGA K++F   ++D+D
Sbjct:  401 DEEAQPTSNVMGCQDCGFTLFIAKGREAKFFGEGFVCPECGAAKDRFDPVDIDED 455
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig125503.1907.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRN9_ECTSI1.280e-4179.35Rubredoxin-like domain-containing protein n=1 Tax=... [more]
A0A835Z4L2_9STRA1.280e-1571.11Rubredoxin-like domain-containing protein n=1 Tax=... [more]
L1IPJ7_GUITC3.930e-1563.93Rubredoxin-like domain-containing protein n=2 Tax=... [more]
A0A7S2XMQ9_9STRA5.830e-1568.09Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S0NDR1_9CRYP1.140e-1462.30Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
A0A8J6CDY1_DIALT8.720e-1453.23Rubredoxin-like domain-containing protein n=2 Tax=... [more]
A0A448YYL6_9STRA4.510e-1362.26Rubredoxin-like domain-containing protein n=1 Tax=... [more]
A0A7S0YQJ8_9CRYP6.180e-1355.17Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S0THQ3_HEMAN5.540e-1255.00Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A1E7FDG3_9STRA1.030e-1150.91Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig125503contigH-elongata_contig125503:938..1722 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score154.8
Seed ortholog evalue2e-35
Seed eggNOG ortholog2880.D8LRN9
EggNOG OGs2E1U7@1,2S947@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRubredoxin-type fold
Ec32 orthologEc-12_000500.1
Exons2
Model size288
Cds size288
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929741.7840862-CDS-H-elongata_contig125503:937..10611622929741.7840862-CDS-H-elongata_contig125503:937..1061Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig125503 938..1061 -
1691679139.9623494-CDS-H-elongata_contig125503:937..10611691679139.9623494-CDS-H-elongata_contig125503:937..1061Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig125503 938..1061 -
1622929741.7993255-CDS-H-elongata_contig125503:1558..17221622929741.7993255-CDS-H-elongata_contig125503:1558..1722Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig125503 1559..1722 -
1691679139.9779003-CDS-H-elongata_contig125503:1558..17221691679139.9779003-CDS-H-elongata_contig125503:1558..1722Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig125503 1559..1722 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig125503.1907.1prot_H-elongata_contig125503.1907.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig125503 938..1722 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig125503.1907.1

>prot_H-elongata_contig125503.1907.1 ID=prot_H-elongata_contig125503.1907.1|Name=mRNA_H-elongata_contig125503.1907.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=96bp
QTGGPGTNDEESDPDAAQALQQLNADMEAKKTEPQDEKDPEPEGTAKSYE
CQVCGYKMFVAKGREFKFFGDNFKCPECGAGKNKFTEAEMDDDLI*
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mRNA from alignment at H-elongata_contig125503:938..1722-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig125503.1907.1 ID=mRNA_H-elongata_contig125503.1907.1|Name=mRNA_H-elongata_contig125503.1907.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=785bp|location=Sequence derived from alignment at H-elongata_contig125503:938..1722- (Himanthalia elongata Himel1 dioecious)
CAGACCGGGGGACCTGGTACGAACGACGAGGAGTCGGACCCGGATGCGGC
GCAGGCGTTACAGCAGCTGAACGCGGACATGGAGGCCAAGAAAACGGAGC
CGCAGGATGAGAAAGACCCGGAGCCGGAGGGGACTGCAAAGTCGTATGAG
TGCCAAGTCTGCGGGTGAGCCGTGACGCTTTACTGGAAGTTGTTATTCGC
GATAGGGTGTGTGGGGGGTGAGAGAGCATGGAACATAGATCTATACTGTA
GGAGGCGAAGGCTTGGGAGTCGTGTTCCTCGGAGGTGCCTTATGCCCCGC
TCGTTTTTCGCTGGGACTTGCGGAGCGTTCTTGGACGACCCCATTCGAAG
CGTGAAGCTCAGACAAGAGAGCGAGTGTCATGTTGCGTTGCAGGGGTTAG
GTGGGAAATCATGCAAATAGTACGGCACTGTTGCCGCAGCAGTGGGATTT
GTGACTGTAGGCAAGCGAGAAACCGCTGGGACGCGCCGTCCTTAGTCCTG
TCTCGAGTCGCATGATTGATCAGACAGCGCGATTACACTCCACGAACAAG
TAGTGTACCGCGGGTGGCTTATCGCTCGAAGTGGCAGTACGGCTCACGTT
CGCCACTTGGTCAGCCCTGTTCGTTTTCTTTCGTGCATCTGTTTATTTTT
TCCATGAGCAGATACAAGATGTTCGTTGCGAAGGGACGCGAGTTCAAGTT
CTTCGGCGACAACTTTAAGTGCCCGGAGTGCGGAGCTGGCAAGAACAAGT
TCACGGAGGCGGAGATGGACGACGACTTGATCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig125503:938..1722-

>mRNA_H-elongata_contig125503.1907.1 ID=mRNA_H-elongata_contig125503.1907.1|Name=mRNA_H-elongata_contig125503.1907.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=576bp|location=Sequence derived from alignment at H-elongata_contig125503:938..1722- (Himanthalia elongata Himel1 dioecious)
CAGACCGGGGGACCTGGTACGAACGACGAGGAGTCGGACCCGGATGCGGC
GCAGGCGTTACAGCAGCTGAACGCGGACATGGAGGCCAAGAAAACGGAGC
CGCAGGATGAGAAAGACCCGGAGCCGGAGGGGACTGCAAAGTCGTATGAG
TGCCAAGTCTGCGGCAGACCGGGGGACCTGGTACGAACGACGAGGAGTCG
GACCCGGATGCGGCGCAGGCGTTACAGCAGCTGAACGCGGACATGGAGGC
CAAGAAAACGGAGCCGCAGGATGAGAAAGACCCGGAGCCGGAGGGGACTG
CAAAGTCGTATGAGTGCCAAGTCTGCGGATACAAGATGTTCGTTGCGAAG
GGACGCGAGTTCAAGTTCTTCGGCGACAACTTTAAGTGCCCGGAGTGCGG
AGCTGGCAAGAACAAGTTCACGGAGGCGGAGATGGACGACGACTTGATCT
GAATACAAGATGTTCGTTGCGAAGGGACGCGAGTTCAAGTTCTTCGGCGA
CAACTTTAAGTGCCCGGAGTGCGGAGCTGGCAAGAACAAGTTCACGGAGG
CGGAGATGGACGACGACTTGATCTGA
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