mRNA_H-elongata_contig125480.1905.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig125480.1905.1 vs. uniprot
Match: D7FKJ5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKJ5_ECTSI) HSP 1 Score: 110 bits (275), Expect = 9.830e-27 Identity = 51/60 (85.00%), Postives = 56/60 (93.33%), Query Frame = 1
Query: 16 AATAKSSAHYDLIIIGSGPAAQKCALESVKYGKRVCVIDKSSLLGGVCVHTGTIPSKTFR 195
AA AKSSAHYDL+I+GSGPAAQKCA+ES KYGK VC++DKSS LGGVCVHTGTIPSKTFR
Sbjct: 34 AALAKSSAHYDLVIVGSGPAAQKCAIESAKYGKSVCIVDKSSQLGGVCVHTGTIPSKTFR 93
BLAST of mRNA_H-elongata_contig125480.1905.1 vs. uniprot
Match: A0A225VQV1_9STRA (Soluble pyridine nucleotide transhydrogenase (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VQV1_9STRA) HSP 1 Score: 92.4 bits (228), Expect = 1.050e-22 Identity = 40/65 (61.54%), Postives = 52/65 (80.00%), Query Frame = 1
Query: 1 PLSSQAATAKSSAHYDLIIIGSGPAAQKCALESVKYGKRVCVIDKSSLLGGVCVHTGTIPSKTFR 195
PL+ ++S H+DLI+IGSGPA QKCA++S K+GK V ++DK +LGGVCVHTGT+PSKTFR
Sbjct: 39 PLTDTLRELRASEHFDLIVIGSGPAGQKCAIDSAKHGKSVAIVDKRDMLGGVCVHTGTVPSKTFR 103
BLAST of mRNA_H-elongata_contig125480.1905.1 vs. uniprot
Match: A0A4D9CNB1_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CNB1_9STRA) HSP 1 Score: 97.1 bits (240), Expect = 4.750e-22 Identity = 44/54 (81.48%), Postives = 51/54 (94.44%), Query Frame = 1
Query: 34 SAHYDLIIIGSGPAAQKCALESVKYGKRVCVIDKSSLLGGVCVHTGTIPSKTFR 195
SAHYDLI+IGSGPAAQKCA++SVK G+RV +IDK+S +GGVCVHTGTIPSKTFR
Sbjct: 56 SAHYDLIVIGSGPAAQKCAIDSVKRGRRVAMIDKNSQMGGVCVHTGTIPSKTFR 109
BLAST of mRNA_H-elongata_contig125480.1905.1 vs. uniprot
Match: A0A662X7S1_9STRA (Pyr_redox_2 domain-containing protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X7S1_9STRA) HSP 1 Score: 94.4 bits (233), Expect = 6.490e-22 Identity = 43/65 (66.15%), Postives = 52/65 (80.00%), Query Frame = 1
Query: 1 PLSSQAATAKSSAHYDLIIIGSGPAAQKCALESVKYGKRVCVIDKSSLLGGVCVHTGTIPSKTFR 195
PLS ++S H+DLI+IGSGPA QKCA++S K+GK V VIDK +LGGVCVHTGT+PSKTFR
Sbjct: 44 PLSDTLRELRASEHFDLIVIGSGPAGQKCAIDSAKHGKSVAVIDKRDMLGGVCVHTGTVPSKTFR 108
BLAST of mRNA_H-elongata_contig125480.1905.1 vs. uniprot
Match: A0A2P4YGV7_9STRA (Soluble pyridine nucleotide transhydrogenase (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YGV7_9STRA) HSP 1 Score: 88.6 bits (218), Expect = 4.750e-21 Identity = 40/53 (75.47%), Postives = 46/53 (86.79%), Query Frame = 1
Query: 37 AHYDLIIIGSGPAAQKCALESVKYGKRVCVIDKSSLLGGVCVHTGTIPSKTFR 195
A YDL++IGSGP+A +CALES K GKRV V+D+ S LGGVCVHTGTIPSKTFR
Sbjct: 27 AAYDLVVIGSGPSATQCALESAKQGKRVAVVDRKSRLGGVCVHTGTIPSKTFR 79
BLAST of mRNA_H-elongata_contig125480.1905.1 vs. uniprot
Match: A0A835ZER9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZER9_9STRA) HSP 1 Score: 93.2 bits (230), Expect = 1.290e-20 Identity = 41/52 (78.85%), Postives = 47/52 (90.38%), Query Frame = 1
Query: 40 HYDLIIIGSGPAAQKCALESVKYGKRVCVIDKSSLLGGVCVHTGTIPSKTFR 195
HYDLIIIGSGPAAQKCA++S K G+RV V+DK ++GGVCVHTGTIPSKTFR
Sbjct: 55 HYDLIIIGSGPAAQKCAVDSAKLGRRVAVVDKLGMIGGVCVHTGTIPSKTFR 106
BLAST of mRNA_H-elongata_contig125480.1905.1 vs. uniprot
Match: K3WL68_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WL68_GLOUD) HSP 1 Score: 92.8 bits (229), Expect = 1.710e-20 Identity = 42/65 (64.62%), Postives = 51/65 (78.46%), Query Frame = 1
Query: 1 PLSSQAATAKSSAHYDLIIIGSGPAAQKCALESVKYGKRVCVIDKSSLLGGVCVHTGTIPSKTFR 195
PLS K+S H+DLI+IGSGPA QKCA++S K+GK V +IDK + GGVCVHTGT+PSKTFR
Sbjct: 36 PLSDMLRELKASEHFDLIVIGSGPAGQKCAIDSAKHGKSVAIIDKRDMHGGVCVHTGTVPSKTFR 100
BLAST of mRNA_H-elongata_contig125480.1905.1 vs. uniprot
Match: A0A8J5JAY8_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5JAY8_9STRA) HSP 1 Score: 92.8 bits (229), Expect = 1.800e-20 Identity = 41/65 (63.08%), Postives = 52/65 (80.00%), Query Frame = 1
Query: 1 PLSSQAATAKSSAHYDLIIIGSGPAAQKCALESVKYGKRVCVIDKSSLLGGVCVHTGTIPSKTFR 195
PL+ ++S H+DLI+IGSGPA QKCA++S K+GK V +IDK +LGGVCVHTGT+PSKTFR
Sbjct: 37 PLTDTLRELRASEHFDLIVIGSGPAGQKCAIDSAKHGKSVAIIDKRDMLGGVCVHTGTVPSKTFR 101
BLAST of mRNA_H-elongata_contig125480.1905.1 vs. uniprot
Match: F0VZ15_9STRA (Soluble pyridine nucleotide transhydrogenase putative n=2 Tax=Albugo TaxID=65356 RepID=F0VZ15_9STRA) HSP 1 Score: 92.4 bits (228), Expect = 2.370e-20 Identity = 39/56 (69.64%), Postives = 49/56 (87.50%), Query Frame = 1
Query: 28 KSSAHYDLIIIGSGPAAQKCALESVKYGKRVCVIDKSSLLGGVCVHTGTIPSKTFR 195
K+S HYDLI++GSGPA QKCA++S K+GK V +IDK+ + GGVCVHTGT+PSKTFR
Sbjct: 50 KASEHYDLIVVGSGPAGQKCAIDSAKHGKSVAIIDKNEMHGGVCVHTGTVPSKTFR 105
BLAST of mRNA_H-elongata_contig125480.1905.1 vs. uniprot
Match: A0A0P1AKW9_PLAHL (Soluble pyridine nucleotide n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AKW9_PLAHL) HSP 1 Score: 92.4 bits (228), Expect = 2.400e-20 Identity = 40/56 (71.43%), Postives = 49/56 (87.50%), Query Frame = 1
Query: 28 KSSAHYDLIIIGSGPAAQKCALESVKYGKRVCVIDKSSLLGGVCVHTGTIPSKTFR 195
++S H+DLI+IGSGPA QKCA++S K+GK V +IDK +LGGVCVHTGTIPSKTFR
Sbjct: 31 RASEHFDLIVIGSGPAGQKCAIDSAKHGKSVAIIDKRDMLGGVCVHTGTIPSKTFR 86 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig125480.1905.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig125480.1905.1 >prot_H-elongata_contig125480.1905.1 ID=prot_H-elongata_contig125480.1905.1|Name=mRNA_H-elongata_contig125480.1905.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=66bp PLSSQAATAKSSAHYDLIIIGSGPAAQKCALESVKYGKRVCVIDKSSLLGback to top mRNA from alignment at H-elongata_contig125480:728..1210+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig125480.1905.1 ID=mRNA_H-elongata_contig125480.1905.1|Name=mRNA_H-elongata_contig125480.1905.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=483bp|location=Sequence derived from alignment at H-elongata_contig125480:728..1210+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig125480:728..1210+ >mRNA_H-elongata_contig125480.1905.1 ID=mRNA_H-elongata_contig125480.1905.1|Name=mRNA_H-elongata_contig125480.1905.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=396bp|location=Sequence derived from alignment at H-elongata_contig125480:728..1210+ (Himanthalia elongata Himel1 dioecious)back to top |