mRNA_H-elongata_contig125387.1903.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig125387.1903.1 vs. uniprot
Match: D7FRT2_ECTSI (EsV-1-164 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRT2_ECTSI) HSP 1 Score: 60.8 bits (146), Expect = 7.050e-9 Identity = 29/71 (40.85%), Postives = 39/71 (54.93%), Query Frame = 1
Query: 31 YKDEENMTNESCIEHCRNEGNEFAGTYNKTRCRCTNREWKVSRYGLSDNCTEMCPGDVSQICGGKWAVSSW 243
Y+DE+ +T SCIE CR EG E AG ++C C + +RYG C C GD Q CGG+ + + W
Sbjct: 628 YEDEDTLTPASCIESCREEGEELAGVQGGSQCWCGTTD-DYTRYGTG-TCNFSCSGDSEQTCGGRESANVW 696
BLAST of mRNA_H-elongata_contig125387.1903.1 vs. uniprot
Match: A0A8K0EL98_BRALA (PTPRF protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8K0EL98_BRALA) HSP 1 Score: 58.2 bits (139), Expect = 6.510e-8 Identity = 27/80 (33.75%), Postives = 42/80 (52.50%), Query Frame = 1
Query: 13 RTMSWGYKDEENMTNESCIEHCRNEGNEFAGTYNKTRCRCTNREW--KVSRYGLSDNCTEMCPGDVSQICGGKWAVSSWR 246
R + G K + MT + CIEHCR+EG +AGT C C N ++ R + C+ C G+ + CGG W ++ ++
Sbjct: 1203 RRLPKGPKISQEMTTDLCIEHCRDEGYNYAGTQYYEECWCGNERHFSRIGRQRKNKQCSTPCRGNDDEKCGGPWRLAVYK 1282
BLAST of mRNA_H-elongata_contig125387.1903.1 vs. uniprot
Match: A0A8J9ZFJ5_BRALA (PTPRF protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9ZFJ5_BRALA) HSP 1 Score: 58.2 bits (139), Expect = 6.540e-8 Identity = 27/80 (33.75%), Postives = 42/80 (52.50%), Query Frame = 1
Query: 13 RTMSWGYKDEENMTNESCIEHCRNEGNEFAGTYNKTRCRCTNREW--KVSRYGLSDNCTEMCPGDVSQICGGKWAVSSWR 246
R + G K + MT + CIEHCR+EG +AGT C C N ++ R + C+ C G+ + CGG W ++ ++
Sbjct: 1203 RRLPKGPKISQEMTTDLCIEHCRDEGYNYAGTQYYEECWCGNERHFSRIGRQRKNKQCSTPCRGNDDEKCGGPWRLAVYK 1282
BLAST of mRNA_H-elongata_contig125387.1903.1 vs. uniprot
Match: U9UIT6_RHIID (Uncharacterized protein n=6 Tax=Rhizophagus TaxID=1129544 RepID=U9UIT6_RHIID) HSP 1 Score: 54.3 bits (129), Expect = 1.290e-6 Identity = 25/68 (36.76%), Postives = 37/68 (54.41%), Query Frame = 1
Query: 43 ENMTNESCIEHCRNEGNEFAGTYNKTRCRCTNREWKVSRYGLSDNCTEMCPGDVSQICGGKWAVSSWR 246
E MT E CI +CR +AG + +C C N + R S+ C+ CPG+ Q+CGG +A+S +
Sbjct: 193 ETMTVEECINYCREGNYRYAGLEARVQCFCGNTYNPLGRLLGSEYCSNSCPGNNYQLCGGSFALSIYE 260
BLAST of mRNA_H-elongata_contig125387.1903.1 vs. uniprot
Match: A0A8B6GN44_MYTGA (WSC domain-containing protein (Fragment) n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6GN44_MYTGA) HSP 1 Score: 52.4 bits (124), Expect = 4.890e-6 Identity = 23/73 (31.51%), Postives = 39/73 (53.42%), Query Frame = 1
Query: 49 MTNESCIEHCRNEGNEFAGTYNKTRCRCTNREWKVSRYGLSD------NCTEMCPGDVSQICGGKWAVSSWRT 249
M N C+ +C+ +G ++GT C C + ++ S + D +C ++C D SQICGG W +S ++T
Sbjct: 85 MENNKCLVYCKEQGYMYSGTQGGKECWCGDDPYQFSPADVPDEYQQDYDCNQVCLVDSSQICGGPWRLSVYKT 157
BLAST of mRNA_H-elongata_contig125387.1903.1 vs. uniprot
Match: A0A6H5GQK3_9HEMI (Uncharacterized protein n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GQK3_9HEMI) HSP 1 Score: 52.8 bits (125), Expect = 4.950e-6 Identity = 25/79 (31.65%), Postives = 41/79 (51.90%), Query Frame = 1
Query: 4 AYARTMSWGYKD-EENMTNESCIEHCRNEGNEFAGTYNKTRCRCTNREWKVSRYGLSDNCTEMCPGDVSQICGGKWAVS 237
A AR M+ KD + ++TN+ CI++C+ +A T K +C C+N D C + C G+ + CGG + +S
Sbjct: 71 AQARLMTGAQKDFQGSLTNQKCIDYCKERHFSYAATQFKYQCFCSNERPHFKSSAEEDECNQPCDGNSEETCGGGYRLS 149
BLAST of mRNA_H-elongata_contig125387.1903.1 vs. uniprot
Match: A0A6H5GN81_9HEMI (Uncharacterized protein n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GN81_9HEMI) HSP 1 Score: 52.8 bits (125), Expect = 4.980e-6 Identity = 25/79 (31.65%), Postives = 41/79 (51.90%), Query Frame = 1
Query: 4 AYARTMSWGYKD-EENMTNESCIEHCRNEGNEFAGTYNKTRCRCTNREWKVSRYGLSDNCTEMCPGDVSQICGGKWAVS 237
A AR M+ KD + ++TN+ CI++C+ +A T K +C C+N D C + C G+ + CGG + +S
Sbjct: 214 AQARLMTGAQKDFQGSLTNQKCIDYCKERHFSYAATQFKYQCFCSNERPHFKSSAEEDECNQPCDGNSEETCGGGYRLS 292
BLAST of mRNA_H-elongata_contig125387.1903.1 vs. uniprot
Match: A0A8J4AYG8_9CHLO (Uncharacterized protein (Fragment) n=2 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4AYG8_9CHLO) HSP 1 Score: 51.6 bits (122), Expect = 1.290e-5 Identity = 26/74 (35.14%), Postives = 36/74 (48.65%), Query Frame = 1
Query: 31 YKDEENMTNESCIEHCRNEGNEFAGTYNKTRCRCTNREWKVSRYGLSDNCTEMCPGDVSQICGGKWAVSSWRTS 252
Y+ + MT + C E +G + G T+C N + G S C C GD SQ+CGG W +S +RTS
Sbjct: 257 YEQSDKMTIDHCREVALAQGYIYFGVEAGTQCFGANNISRAQTNGRSAYCNWRCAGDDSQVCGGDWVISIYRTS 330
BLAST of mRNA_H-elongata_contig125387.1903.1 vs. uniprot
Match: A0A179GQT0_PURLI (WSC domain-containing protein n=1 Tax=Purpureocillium lilacinum TaxID=33203 RepID=A0A179GQT0_PURLI) HSP 1 Score: 50.8 bits (120), Expect = 2.370e-5 Identity = 24/68 (35.29%), Postives = 34/68 (50.00%), Query Frame = 1
Query: 49 MTNESCIEHCRNEGNEFAGTYNKTRCRCTNREWKVSRYGLSDNCTEMCPGDVSQICGGKWAVSSWRTS 252
M+N +CI+HC++ G FAGT C C + + +C C G Q CGG WA+S + S
Sbjct: 546 MSNSTCIDHCKSRGYTFAGTECGKECWCGSSIRDDAVRLPDSSCGSPCQGAGGQFCGGDWAISVFTCS 613
BLAST of mRNA_H-elongata_contig125387.1903.1 vs. uniprot
Match: A0A3M7MV32_9EURO (Uncharacterized protein (Fragment) n=1 Tax=Chaetothyriales sp. CBS 135597 TaxID=2249420 RepID=A0A3M7MV32_9EURO) HSP 1 Score: 50.8 bits (120), Expect = 2.420e-5 Identity = 24/64 (37.50%), Postives = 28/64 (43.75%), Query Frame = 1
Query: 31 YKDEENMTNESCIEHCRNEGNEFAGTYNKTRCRCTNREWKVSRYGLSDNCTEMCPGDVSQICGG 222
Y D N+T ESCIE C N G +AG C C N +C C G Q+CGG
Sbjct: 67 YVDASNLTEESCIEFCDNNGFAYAGVEYSQECFCANVIGSSGSLADDSDCNMACTGSSDQLCGG 130 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig125387.1903.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig125387.1903.1 >prot_H-elongata_contig125387.1903.1 ID=prot_H-elongata_contig125387.1903.1|Name=mRNA_H-elongata_contig125387.1903.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=79bp MSWGYKDEENMTNESCIEHCRNEGNEFAGTYNKTRCRCTNREWKVSRYGLback to top mRNA from alignment at H-elongata_contig125387:904..1692+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig125387.1903.1 ID=mRNA_H-elongata_contig125387.1903.1|Name=mRNA_H-elongata_contig125387.1903.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=789bp|location=Sequence derived from alignment at H-elongata_contig125387:904..1692+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig125387:904..1692+ >mRNA_H-elongata_contig125387.1903.1 ID=mRNA_H-elongata_contig125387.1903.1|Name=mRNA_H-elongata_contig125387.1903.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=474bp|location=Sequence derived from alignment at H-elongata_contig125387:904..1692+ (Himanthalia elongata Himel1 dioecious)back to top |