mRNA_H-elongata_contig12538.1902.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig12538.1902.1
Unique NamemRNA_H-elongata_contig12538.1902.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12538.1902.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12538contigH-elongata_contig12538:1608..2158 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size361
Cds size246
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12538.1902.1prot_H-elongata_contig12538.1902.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig12538 1610..2045 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929740.7127218-UTR-H-elongata_contig12538:1607..16091622929740.7127218-UTR-H-elongata_contig12538:1607..1609Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12538 1608..1609 -
1691679139.682082-UTR-H-elongata_contig12538:1607..16091691679139.682082-UTR-H-elongata_contig12538:1607..1609Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12538 1608..1609 -
1622929740.756317-UTR-H-elongata_contig12538:2045..21581622929740.756317-UTR-H-elongata_contig12538:2045..2158Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12538 2046..2158 -
1691679139.722663-UTR-H-elongata_contig12538:2045..21581691679139.722663-UTR-H-elongata_contig12538:2045..2158Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12538 2046..2158 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929740.7280064-CDS-H-elongata_contig12538:1609..16531622929740.7280064-CDS-H-elongata_contig12538:1609..1653Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12538 1610..1653 -
1691679139.70012-CDS-H-elongata_contig12538:1609..16531691679139.70012-CDS-H-elongata_contig12538:1609..1653Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12538 1610..1653 -
1622929740.7435849-CDS-H-elongata_contig12538:1843..20451622929740.7435849-CDS-H-elongata_contig12538:1843..2045Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12538 1844..2045 -
1691679139.7129638-CDS-H-elongata_contig12538:1843..20451691679139.7129638-CDS-H-elongata_contig12538:1843..2045Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12538 1844..2045 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig12538.1902.1

>prot_H-elongata_contig12538.1902.1 ID=prot_H-elongata_contig12538.1902.1|Name=mRNA_H-elongata_contig12538.1902.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=82bp
MEIKPGGGTILSRFCPRVSFIKRSSRVLFTDSPKKYIDTLSHDRERWVVY
CTVLSFSVPYFTTNRVEAHGVPRIWRPLPRV*
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mRNA from alignment at H-elongata_contig12538:1608..2158-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig12538.1902.1 ID=mRNA_H-elongata_contig12538.1902.1|Name=mRNA_H-elongata_contig12538.1902.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=551bp|location=Sequence derived from alignment at H-elongata_contig12538:1608..2158- (Himanthalia elongata Himel1 dioecious)
GTTAGTGTTAGGGTCAGGTTGGGTCAGCAGTTGCAGCGGTTGGGCCATCA
GCTGCCCGAAAGCAGCGAAGGGGGTGTGGTTCCCCGGGTCTCGTGCACTA
AACGATTCCCAAAATGGAGATTAAACCCGGGGGCGGTACGATTTTGTCCC
GATTTTGTCCTCGGGTCTCGTTTATTAAACGATCCTCGCGGGTCTTGTTT
ACCGACTCCCCGAAGAAGTACATAGACACCCTCTCTCATGATCGCGAACG
CTGGGTGGTGTATTGCACGGTTCTTTCATTCAGCGTCCCGTACTTCACCA
CCAACAGGGTTGAAGGTAAGAGATTGCTGCGCCTTGGTGTAGGCATATGG
TCGTGAGGTTTGCGCGTCGTGTGAGGAGTCCTGGTATATGGTCGAACGAA
AAGGTGTTGCCGTGCTCTCCGACCATTTGGCCTTGTGCAAACATCGCGTT
GAGTTTGAACACTGCATTTTCTCGGTATTGCCCAATGCTTGCTGTCGGCA
TACAGCTCACGGTGTACCCCGCATCTGGCGCCCACTGCCCCGCGTTTGAG
G
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Coding sequence (CDS) from alignment at H-elongata_contig12538:1608..2158-

>mRNA_H-elongata_contig12538.1902.1 ID=mRNA_H-elongata_contig12538.1902.1|Name=mRNA_H-elongata_contig12538.1902.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=492bp|location=Sequence derived from alignment at H-elongata_contig12538:1608..2158- (Himanthalia elongata Himel1 dioecious)
ATGGAGATTAAACCCGGGGGCGGTACGATTTTGTCCCGATTTTGTCCTCG
GGTCTCGTTTATTAAACGATCCTCGCGGGTCTTGTTTACCGACTCCCCGA
AGAAGTACATAGACACCCTCTCTCATGATCGCGAACGCTGGGTGGTGTAT
TGCACGGTTCTTTCATTCAGCGTCCCGTACTTCACCACCAACAGGGTTGA
AGATGGAGATTAAACCCGGGGGCGGTACGATTTTGTCCCGATTTTGTCCT
CGGGTCTCGTTTATTAAACGATCCTCGCGGGTCTTGTTTACCGACTCCCC
GAAGAAGTACATAGACACCCTCTCTCATGATCGCGAACGCTGGGTGGTGT
ATTGCACGGTTCTTTCATTCAGCGTCCCGTACTTCACCACCAACAGGGTT
GAAGCTCACGGTGTACCCCGCATCTGGCGCCCACTGCCCCGCGTTTGACT
CACGGTGTACCCCGCATCTGGCGCCCACTGCCCCGCGTTTGA
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