mRNA_H-elongata_contig12531.1900.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig12531.1900.1
Unique NamemRNA_H-elongata_contig12531.1900.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig12531.1900.1 vs. uniprot
Match: A0A6H5KU01_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU01_9PHAE)

HSP 1 Score: 367 bits (941), Expect = 2.160e-118
Identity = 205/331 (61.93%), Postives = 243/331 (73.41%), Query Frame = 1 
Query:  229 LFEEAEDVVDYASLVVFASEQPAALRAASAVSRLRGHLLAVRKSKDVNLRATLEAFIVGDGEERGGGGGILRPAEFDITLRELGLEFTRDEKTALYKRLDPTG--TGINCHDLVAFIKDESNNRHG-------DMVLATVDEEVGLGKLLRRAQATIFEAAQRMDADFEGFDRPYLRYDWRQTGRVGTAEFIRSTIRCGFPFTRAQAAFLAGIFGDGSEVAYPKFLSWATPGPDGLAASGRQAGAVGALCGPLPWIERRRTASIGAGDRNRQQNFRDNAEEDLEDDEAELKIRTALHRMGKDGVSKAWREFERMDPEGRRGGVCKQELVEV 1194
            +FEEAED+VDYASLV FA EQPAA RAAS VSRLR HLLAVR  + ++LRATLEAF V DG   GGG  +LR  + +  LRELG + T DEK+ALY RLD +G   GI C DLV F++  ++  +G        + +A+ DEE G+GKLLRRAQATI EAAQRMD+DFE FDRPYLRYDWR+TGRVGTA F+RST RCGFPFTRAQAAFLAG+FGDGS+V+YP FLSWATPGPDGLAASG      G              A++ A +  R  + R    +  E++EAELK+RTAL RMG+DGV++AW EFERMDP GRRGGV +QELVEV
Sbjct:    1 MFEEAEDMVDYASLVAFAKEQPAARRAASVVSRLRSHLLAVRNGEGLDLRATLEAFAVDDGG--GGGRRVLRQPQLESALRELGFKCTDDEKSALYNRLDLSGGNAGIVCTDLVGFVEGPADYDYGVVDTAIGAVTVASRDEERGVGKLLRRAQATIVEAAQRMDSDFEAFDRPYLRYDWRRTGRVGTAAFVRSTARCGFPFTRAQAAFLAGVFGDGSDVSYPTFLSWATPGPDGLAASGVGGDRRGTGESASRLQRHPGEAALSALEGGRSASRRGGVSD--EEEEAELKVRTALQRMGEDGVARAWEEFERMDPGGRRGGVQEQELVEV 327
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BLAST of mRNA_H-elongata_contig12531.1900.1 vs. uniprot
Match: D8LSF6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSF6_ECTSI)

HSP 1 Score: 353 bits (906), Expect = 1.800e-109
Identity = 201/328 (61.28%), Postives = 242/328 (73.78%), Query Frame = 1 
Query:  250 VVDYASLVVFASEQPAALRAASAVSRLRGHLLAVRKSKDVNLRATLEAFIVGDGEERGGGGGILRPAEFDITLRELGLEFTRDEKTALYKRLDPTG--TGINCHDLVAFIKDESNNRHG-------DMVLATVDEEVGLGKLLRRAQATIFEAAQRMDADFEGFDRPYLRYDWRQTGRVGTAEFIRSTIRCGFPFTRAQAAFLAGIFGDGSEVAYPKFLSWATPGPDGLAASGRQAGAVGALCGPLPWIERRR----TASIGAGDRNRQQNFRDNAEEDLEDDEAELKIRTALHRMGKDGVSKAWREFERMDPEGRRGGVCKQELVEV 1194
            +VDYASLV FA EQPAA RAA+ VSRLR HLLAVR  K ++LRATLEAF V DG   GGG  +LR  + +  LRELG + T DEK+ALY RLD +G   GI C DLVAF++  ++  +G        + +A+ DEE G+GKLLRRAQATI EAAQRMD+DFE FDRPYL YDWR+TGRVGTAEF+RST+RCGFPFTRAQAAFLAG+FGDGS+V+YP FLSWATPGPDGLAASG      G L G      R +     A++ A +  R  + R   ++  E++EAELK+RTAL RMG+DGV++AW EFERMDP  RRGGV ++ELVEV
Sbjct:    1 MVDYASLVAFAKEQPAARRAAAVVSRLRSHLLAVRNGKGLDLRATLEAFAVDDGG--GGGRRVLRQPQLEDALRELGFKCTEDEKSALYNRLDLSGGNAGIVCTDLVAFVEGPADYDNGVVDTAIGAVTVASRDEERGVGKLLRRAQATIVEAAQRMDSDFEAFDRPYLCYDWRRTGRVGTAEFVRSTVRCGFPFTRAQAAFLAGVFGDGSDVSYPTFLSWATPGPDGLAASG----VGGDLRGTGESASRLQRHPGAAALSALEGGRSASRRGGVKD--EEEEAELKVRTALQRMGEDGVARAWEEFERMDPGRRRGGVQEEELVEV 320
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12531.1900.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KU01_9PHAE2.160e-11861.93EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
D8LSF6_ECTSI1.800e-10961.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12531contigH-elongata_contig12531:3818..6520 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionC2 domain
Ec32 orthologEc-21_003510.1
Exons5
Model size1204
Cds size1203
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12531.1900.1prot_H-elongata_contig12531.1900.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig12531 3818..6520 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929740.5502627-CDS-H-elongata_contig12531:3817..40271622929740.5502627-CDS-H-elongata_contig12531:3817..4027Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12531 3818..4027 +
1691679139.608954-CDS-H-elongata_contig12531:3817..40271691679139.608954-CDS-H-elongata_contig12531:3817..4027Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12531 3818..4027 +
1622929740.5665972-CDS-H-elongata_contig12531:4460..47351622929740.5665972-CDS-H-elongata_contig12531:4460..4735Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12531 4461..4735 +
1691679139.619207-CDS-H-elongata_contig12531:4460..47351691679139.619207-CDS-H-elongata_contig12531:4460..4735Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12531 4461..4735 +
1622929740.577907-CDS-H-elongata_contig12531:5165..53671622929740.577907-CDS-H-elongata_contig12531:5165..5367Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12531 5166..5367 +
1691679139.6290417-CDS-H-elongata_contig12531:5165..53671691679139.6290417-CDS-H-elongata_contig12531:5165..5367Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12531 5166..5367 +
1622929740.5911064-CDS-H-elongata_contig12531:5697..58291622929740.5911064-CDS-H-elongata_contig12531:5697..5829Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12531 5698..5829 +
1691679139.6383667-CDS-H-elongata_contig12531:5697..58291691679139.6383667-CDS-H-elongata_contig12531:5697..5829Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12531 5698..5829 +
1622929740.6052332-CDS-H-elongata_contig12531:6136..65201622929740.6052332-CDS-H-elongata_contig12531:6136..6520Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12531 6137..6520 +
1691679139.6481402-CDS-H-elongata_contig12531:6136..65201691679139.6481402-CDS-H-elongata_contig12531:6136..6520Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12531 6137..6520 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig12531.1900.1

>prot_H-elongata_contig12531.1900.1 ID=prot_H-elongata_contig12531.1900.1|Name=mRNA_H-elongata_contig12531.1900.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=401bp
AFTIFCEERRPPDVSPAVVLLRSTVLHPGAVDVFARQDPLGKGYICRVDL
FDGLRELGITGTPPLQARKSLRNLALLFEEAEDVVDYASLVVFASEQPAA
LRAASAVSRLRGHLLAVRKSKDVNLRATLEAFIVGDGEERGGGGGILRPA
EFDITLRELGLEFTRDEKTALYKRLDPTGTGINCHDLVAFIKDESNNRHG
DMVLATVDEEVGLGKLLRRAQATIFEAAQRMDADFEGFDRPYLRYDWRQT
GRVGTAEFIRSTIRCGFPFTRAQAAFLAGIFGDGSEVAYPKFLSWATPGP
DGLAASGRQAGAVGALCGPLPWIERRRTASIGAGDRNRQQNFRDNAEEDL
EDDEAELKIRTALHRMGKDGVSKAWREFERMDPEGRRGGVCKQELVEVRG
*
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mRNA from alignment at H-elongata_contig12531:3818..6520+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig12531.1900.1 ID=mRNA_H-elongata_contig12531.1900.1|Name=mRNA_H-elongata_contig12531.1900.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2703bp|location=Sequence derived from alignment at H-elongata_contig12531:3818..6520+ (Himanthalia elongata Himel1 dioecious)
GCATTCACGATATTCTGTGAAGAGCGCCGCCCTCCAGATGTCTCTCCTGC
GGTGGTTCTTCTGAGGTCGACGGTGCTCCATCCAGGCGCAGTCGATGTAT
TCGCGCGGCAAGACCCACTTGGAAAGGGCTACATATGCCGCGTCGATCTA
TTCGACGGATTGAGAGAGCTTGGCATCACAGGAACCCCGCCGCTGCAGGC
ACGTAAGAGCGTCGCGCTCATACTGAATCCGCATACGATGAACGTATCCT
ACTATCTATCGCAGAATAACGTAGCGCCGTACCTTAAGCGACATGGAGAA
TAACCCTAATCCTCGGAGATGGATATTATCTGAAACTGCACATAATTCCG
CAGCAAACATTGACTATTCCAGGATATTTCGCTATGATTGCCATCTTTTT
AAAATTCCGAAGTTGCGGCGTCGAAGTTGCCCGTATTATCGAGACAATGG
GGGTTAGAGAGAGGGAAATTTTCATCGCCGGTGTGCGCTTTTCCGTGTCC
ACCTAAATCGATAGCCAACTCGTTGAACTGCGCGAAGGATTAGACAAGCG
TCTAATCCTCGCGGATCTTGCCGCTATCCCGCTTCGAACCCCGACTCCAA
GGGTGCACCTATCTAACCTCTTTTTTACGTCCATCGACTCTAGCTGCGGA
ACCTCGCCCTTCTGTTTGAGGAAGCTGAAGACGTGGTCGACTACGCCTCG
CTCGTTGTATTTGCCTCGGAGCAACCTGCCGCTCTCAGAGCCGCGTCCGC
AGTGTCTCGTCTTCGAGGACACCTTCTGGCGGTGCGTAAGAGCAAGGATG
TCAACTTGCGCGCAACCTTGGAGGCATTCATCGTCGGGGATGGTGAAGAA
CGCGGAGGCGGGGGTGGGATTCTACGCCCGGCCGAGTTCGATATCACTCT
ACGGGAGTTAGGGTTAGAGTGAGTAAGATGTCGCTCTGCAGGAGTGATTT
TATACAGTGAGTCCTTTTTATTGGCCGAGAGAACGGGGCCAAGAATGAAC
AGATTATTTATTTAATCTCTTGCGGGAAGCATTTCATTTTTATCATGTTG
GTGTGCGCCTCTAGGCTGAATGCCAACAGGTCATTCTTTTGCGAGCGTAA
CATTTGTGTCATGATGTTCAAATAGACCCCGCTTACTGAAACGAGACGCT
GCTGCGCAAGAAGAATCGCTTGCTCTCTGAGGTTTCTATAAAATGTATTT
GTCTCTTGGGTCGCCCAGAAGCTCTAATCGAAAAGCTCCCGACGATCAAG
CGCGCTGAGAAAAACGAGCGGACCAGGGATCTAATAAATTACAAATATGT
ATAGATATACCAAGCAGCCAAGAAAGACTCATCAACATGGTTGTGCAGAT
TCACGCGGGACGAGAAGACGGCGCTGTACAAGAGGCTGGATCCCACGGGC
ACCGGAATTAACTGCCACGACCTAGTGGCCTTCATCAAAGATGAAAGTAA
CAATCGTCACGGAGATATGGTGCTAGCAACAGTTGACGAAGAAGTTGGGC
TGGGAAAACTACTCCGTCGAGCGCAGGCGACTATCTTCGAGGCAGCTCAG
GTGCGTGGCCGACTCGTAGGTCTAGAGCGTCTAGCTGCATTGCGTTCACG
GAAGAGAAAGGTAGAAGGACATAATGTAATATATAATATGGAAGAGAAAG
ATAGAGTTTCAACAATAATTCTATGTCATTTGACAGGTTTAGGCATGGCT
ATCAGGTCAAATTATATAAGGCAAGCTAGGTTATCGAAATCTCAGTGGTA
TCATCAATGCTGAAGTGTTACTTCAAGCTCCGAATGTTGAAGGACTATAC
TACCACACGGTCTCCGAGTCTTGCACCATTGCGCCGACCCCTCCATGTCT
CCTGTCTTGTGGCCGAAAACGACCCTTCAGCGAATGGATGCCGACTTCGA
GGGGTTTGATCGCCCGTATCTTCGCTATGACTGGCGCCAAACGGGACGCG
TAGGTACTGCTGAGTTCATCAGGTCCACAATTCGCTGTGGCTTTCCGTTC
ACGCGAGCACAGGTAAAAAAGAGCTTCTTCTGTGTCTAGAATCGACAGTC
CGTAGTTGTTGTGGCTGATCACGATACGGCAGTGGCTTGTCCTGTCGCGA
GTCGTTATTGTTTTACAAGCGCGGTGGACAAAATATGGTCTCCACACGCA
TTTTCAGCGTGCAAACACCCCTTTTCGTTGAATGCAATTGGGGAAGTGTA
CAATATTAAATAAGAGTATATCCTCGACTCTACCATAAACCTGCCACCAC
GTAGAGTGTCGAGCTAGAACCCTTAAACACGTTCCATCTCCCCTCCAATC
AAATTATCTCACGCGGAAGGCGGCGTTTCTTGCGGGAATATTCGGCGACG
GGAGTGAGGTGGCCTACCCGAAGTTCCTCTCGTGGGCCACGCCTGGCCCA
GATGGGCTCGCGGCCTCCGGCAGGCAAGCTGGCGCGGTGGGTGCTCTTTG
TGGCCCACTGCCGTGGATAGAGCGGCGACGCACGGCTTCGATCGGTGCTG
GCGACAGGAACCGGCAGCAAAACTTTAGGGACAACGCGGAGGAGGACCTG
GAAGACGATGAGGCGGAACTGAAGATTCGAACGGCACTGCATAGGATGGG
AAAAGACGGCGTCTCCAAGGCATGGAGGGAGTTTGAACGAATGGATCCCG
AGGGACGGCGTGGAGGGGTGTGCAAACAGGAGCTGGTGGAGGTGAGGGGT
TGA
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Coding sequence (CDS) from alignment at H-elongata_contig12531:3818..6520+

>mRNA_H-elongata_contig12531.1900.1 ID=mRNA_H-elongata_contig12531.1900.1|Name=mRNA_H-elongata_contig12531.1900.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2406bp|location=Sequence derived from alignment at H-elongata_contig12531:3818..6520+ (Himanthalia elongata Himel1 dioecious)
GCATTCACGATATTCTGTGAAGAGCGCCGCCCTCCAGATGTCTCTCCTGC
GGTGGTTCTTCTGAGGTCGACGGTGCTCCATCCAGGCGCAGTCGATGTAT
TCGCGCGGCAAGACCCACTTGGAAAGGGCTACATATGCCGCGTCGATCTA
TTCGACGGATTGAGAGAGCTTGGCATCACAGGAACCCCGCCGCTGCAGGC
ACGTAAGAGCGCATTCACGATATTCTGTGAAGAGCGCCGCCCTCCAGATG
TCTCTCCTGCGGTGGTTCTTCTGAGGTCGACGGTGCTCCATCCAGGCGCA
GTCGATGTATTCGCGCGGCAAGACCCACTTGGAAAGGGCTACATATGCCG
CGTCGATCTATTCGACGGATTGAGAGAGCTTGGCATCACAGGAACCCCGC
CGCTGCAGGCACGTAAGAGCCTGCGGAACCTCGCCCTTCTGTTTGAGGAA
GCTGAAGACGTGGTCGACTACGCCTCGCTCGTTGTATTTGCCTCGGAGCA
ACCTGCCGCTCTCAGAGCCGCGTCCGCAGTGTCTCGTCTTCGAGGACACC
TTCTGGCGGTGCGTAAGAGCAAGGATGTCAACTTGCGCGCAACCTTGGAG
GCATTCATCGTCGGGGATGGTGAAGAACGCGGAGGCGGGGGTGGGATTCT
ACGCCCGGCCGAGTTCGATATCACTCTACGGGAGTTAGGGTTAGACTGCG
GAACCTCGCCCTTCTGTTTGAGGAAGCTGAAGACGTGGTCGACTACGCCT
CGCTCGTTGTATTTGCCTCGGAGCAACCTGCCGCTCTCAGAGCCGCGTCC
GCAGTGTCTCGTCTTCGAGGACACCTTCTGGCGGTGCGTAAGAGCAAGGA
TGTCAACTTGCGCGCAACCTTGGAGGCATTCATCGTCGGGGATGGTGAAG
AACGCGGAGGCGGGGGTGGGATTCTACGCCCGGCCGAGTTCGATATCACT
CTACGGGAGTTAGGGTTAGAATTCACGCGGGACGAGAAGACGGCGCTGTA
CAAGAGGCTGGATCCCACGGGCACCGGAATTAACTGCCACGACCTAGTGG
CCTTCATCAAAGATGAAAGTAACAATCGTCACGGAGATATGGTGCTAGCA
ACAGTTGACGAAGAAGTTGGGCTGGGAAAACTACTCCGTCGAGCGCAGGC
GACTATCTTCGAGGCAGCTCAGATTCACGCGGGACGAGAAGACGGCGCTG
TACAAGAGGCTGGATCCCACGGGCACCGGAATTAACTGCCACGACCTAGT
GGCCTTCATCAAAGATGAAAGTAACAATCGTCACGGAGATATGGTGCTAG
CAACAGTTGACGAAGAAGTTGGGCTGGGAAAACTACTCCGTCGAGCGCAG
GCGACTATCTTCGAGGCAGCTCAGCGAATGGATGCCGACTTCGAGGGGTT
TGATCGCCCGTATCTTCGCTATGACTGGCGCCAAACGGGACGCGTAGGTA
CTGCTGAGTTCATCAGGTCCACAATTCGCTGTGGCTTTCCGTTCACGCGA
GCACAGCGAATGGATGCCGACTTCGAGGGGTTTGATCGCCCGTATCTTCG
CTATGACTGGCGCCAAACGGGACGCGTAGGTACTGCTGAGTTCATCAGGT
CCACAATTCGCTGTGGCTTTCCGTTCACGCGAGCACAGGCGGCGTTTCTT
GCGGGAATATTCGGCGACGGGAGTGAGGTGGCCTACCCGAAGTTCCTCTC
GTGGGCCACGCCTGGCCCAGATGGGCTCGCGGCCTCCGGCAGGCAAGCTG
GCGCGGTGGGTGCTCTTTGTGGCCCACTGCCGTGGATAGAGCGGCGACGC
ACGGCTTCGATCGGTGCTGGCGACAGGAACCGGCAGCAAAACTTTAGGGA
CAACGCGGAGGAGGACCTGGAAGACGATGAGGCGGAACTGAAGATTCGAA
CGGCACTGCATAGGATGGGAAAAGACGGCGTCTCCAAGGCATGGAGGGAG
TTTGAACGAATGGATCCCGAGGGACGGCGTGGAGGGGTGTGCAAACAGGA
GCTGGTGGAGGTGAGGGGTTGAGCGGCGTTTCTTGCGGGAATATTCGGCG
ACGGGAGTGAGGTGGCCTACCCGAAGTTCCTCTCGTGGGCCACGCCTGGC
CCAGATGGGCTCGCGGCCTCCGGCAGGCAAGCTGGCGCGGTGGGTGCTCT
TTGTGGCCCACTGCCGTGGATAGAGCGGCGACGCACGGCTTCGATCGGTG
CTGGCGACAGGAACCGGCAGCAAAACTTTAGGGACAACGCGGAGGAGGAC
CTGGAAGACGATGAGGCGGAACTGAAGATTCGAACGGCACTGCATAGGAT
GGGAAAAGACGGCGTCTCCAAGGCATGGAGGGAGTTTGAACGAATGGATC
CCGAGGGACGGCGTGGAGGGGTGTGCAAACAGGAGCTGGTGGAGGTGAGG
GGTTGA
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