mRNA_H-elongata_contig12531.1899.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig12531.1899.1 vs. uniprot
Match: D8LSF7_ECTSI (C2-C2_1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSF7_ECTSI) HSP 1 Score: 538 bits (1385), Expect = 5.460e-172 Identity = 339/646 (52.48%), Postives = 405/646 (62.69%), Query Frame = 1
Query: 1 RNHLNFTVMDDRANVI------ESGEEVWPSGDD---LIGEALIDLSPLTDGRPVVAEWTILEDATGKAAGQISVSARWVKPLRIGGDSGPHGLSAEEVEGLMARFSPEKDGQVNYVTFLRECDPPPAVLAVLGQIHAFLSEAAEKEGLCATEALSAVLGIAGSDPKTFVPEEAFVSALLASGKLNTSPEELAVAYAHAADRGGSDSKSDTTRGLTLEHLAAFAALPGETSALDTASSCCG----WVXXXXXXXRPGDGGAPARRALVKTRAKCRDAGLLGRSFPGEAFARLDPEGSGRVTRPAFKRALREMGFALVDERMEMDTGSAGVTPFGGGRYQPNQQQKLEGEAGSSR----NLGSMAED------DHAGEDVKEIRLLRGEGEDEEGDARRKAFRERVEEIERSTTEKVIGSSPSNLPGDRG--GAEVEPCIAQLGDNGGES------------GPPQHHPSSVLVVSRQSNVFIPRPAIKLGRENAVILLQSRFRGFRSRKLGATGGGV--LPSAAKESHNLKHRKVE------------NGHCSILELEDCIDAALGKLEGSCPQPDIRAAFAKLDRDSTGFLDHPRFALALRGIRPALELPPSLLQAAMKFFDAHENYLKDDQGRGGEKSRNVDYR 1785
R+ L TVMDD AN E G + WP D+ LIGEAL+DLSP+ +GRPVVA WT +EDATG++AG+I VSARWVKPLR GGD GPHGLS+EEVEGLMARFSPEKDGQVNYV FL+E DPPPAVLA L QI FL++A+E++GL ATEAL AVLG+ GSDPK + EEAFVSALL+S L SP+ELA AYAH + GLTLEHLAAFA+ G WV RPGDGGA ARRALVK R KCRDAGLLGRSFPGE FA+LDPEG+GRV RPAFKRALREMGFALVDE E + S G+ G Q + K E E G R LG+M E+ HA E EIRL R EGE E +ARR+AFR +VE IER+T EK+ + + G G G VEP IA L DN PP HPSS V+R S I LGR+ A L+QSRFRG+R+R+ GGG L + K G CS+L+LED +++ G+LEG+CP PD+RA+FAKLD++STG LD PRFALALR +RP+LEL P LL+AAM++F+ ++ + GG+ SR +DYR
Sbjct: 910 RHRLTVTVMDDLANAPGDLDANEGGGDAWPDDDESEGLIGEALVDLSPMAEGRPVVAGWTTVEDATGRSAGKICVSARWVKPLRTGGDPGPHGLSSEEVEGLMARFSPEKDGQVNYVAFLKESDPPPAVLAALSQIQTFLADASERDGLSATEALGAVLGVQGSDPKAQLSEEAFVSALLSSASLTASPDELAAAYAHXXXXXXXXXXXXSHHGLTLEHLAAFASCGGXXXXXXXXXXXXXXXGDWVSWIGAV-RPGDGGAAARRALVKARVKCRDAGLLGRSFPGEVFAKLDPEGAGRVGRPAFKRALREMGFALVDEAPE--SNSEGLL----GGDQQWRALKAEQEGGRGRAAGMGLGNMLEEAASATATHADE---EIRLRRAEGE-ERDEARRQAFRAKVEGIERATAEKIDAAEALSGGGGVGPKGEGVEPRIANL-DNXXXXXXXXXXXXXXGLAPPNQHPSS--TVARDSQARIGPAGGGLGRDAAASLVQSRFRGYRTRRSLVGGGGAEGLTAGGKXXXXXXXXXXXXXXXXXXXXXEGKGKCSVLDLEDYVESIFGRLEGTCPPPDLRASFAKLDKESTGLLDRPRFALALRNLRPSLELSPELLRAAMEYFE-DSTAVRGGRVGGGQTSR-IDYR 1539
BLAST of mRNA_H-elongata_contig12531.1899.1 vs. uniprot
Match: A0A6H5KSV9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSV9_9PHAE) HSP 1 Score: 436 bits (1121), Expect = 2.250e-138 Identity = 279/529 (52.74%), Postives = 330/529 (62.38%), Query Frame = 1
Query: 1 RNHLNFTVMDDRAN------VIESGEEVWPSGDD------------------LIGEALIDLSPLTDGRPVVAEWTILEDATGKAAGQISVSARWVKPLRIGGDSGPHGLSAEEVEGLMARFSPEKDGQ-----VNYVTFLRECDPPPAVLAVLGQIHAFLSEAAEKEGLCATEALSAVLGIAGSDPKTFVPEEAFVSALLASGKLNTSPEELAVAYAHAADRGGSDSKSDTTRGLTLEHLAAFAALPGETSALDTASSCCGWVXXXXXXXRPGDGGAPARRALVKTRAKCRDAGLLGRSFPGEAFARLDPEGSGRVTRPAFKRALREMGFALVDERMEMDTGSAGVTPFGGGRYQPNQQQKLEGEAGSSRN--LGSMAED------DHAGEDVKEIRLLRGEGEDEEGDARRKAFRERVEEIERSTTEKVIGSSPSNLPGDRG----GAEVEPCIAQLGD---------NGGESGPPQHHPSSVLVVSRQSNVFIPRPAIKLGRENAVILLQSRFRGFRSRKLGATGGG 1437
R+ L TVMDD AN + G + WP D+ LIGEALIDLSPL +GRPVVA WT +EDATG++AG++ VSARWVKPLR GGD GPHGLS+EEVEGLMARFSPEKDGQ VNY+ FL+E DPPPAVLA L Q+ FL++A+E++GL ATEAL AVLG+ GSDPKT + EEAFVSALL+S L SP+ELA AYA+ A + GLTLEHLAAFA+ G WV RPGDGGA ARRALVK R KCRDAGLLGRSFPGE FA+LDPEG+GRV RPAFKR LREMGFALVDE E + S G+ GG + + EG G + LG+M E+ HA E EIRL R EGE E +ARR+AFRE+V++IER+T EK+ + L G G G +EP I L + NG PP HPSS V+R S I LGR+ A L+QSRFRG+R+R+ G GGG
Sbjct: 427 RHRLTVTVMDDLANGPGDPDANQEGGDAWPDDDESEGNSQRPFFLADSQAQGLIGEALIDLSPLAEGRPVVAGWTTVEDATGRSAGKVCVSARWVKPLRTGGDPGPHGLSSEEVEGLMARFSPEKDGQARASVVNYIAFLKESDPPPAVLAALSQMQTFLADASERDGLSATEALGAVLGVEGSDPKTQLSEEAFVSALLSSASLTASPDELAAAYAYTAGXXXXXXXXXSHHGLTLEHLAAFASCGGXXXXXXXXXXXGDWVSWIGAV-RPGDGGAAARRALVKARVKCRDAGLLGRSFPGEVFAKLDPEGAGRVGRPAFKRGLREMGFALVDEAPE--SNSEGL--LGGDQQWRAIKAGQEGGRGRAAGGGLGNMLEEAASATATHADE---EIRLRRAEGE-ERDEARRQAFREKVQDIERATAEKIDAAEA--LSGGDGVGPKGEGIEPRIVNLDNDNRTLDGSGNGTGLAPPNQHPSS--TVARNSQARIGPAGGGLGRDAAASLVQSRFRGYRTRR-GLVGGG 941
BLAST of mRNA_H-elongata_contig12531.1899.1 vs. uniprot
Match: A0A836CCF4_9STRA (EF-hand domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCF4_9STRA) HSP 1 Score: 112 bits (281), Expect = 4.780e-22 Identity = 72/156 (46.15%), Postives = 96/156 (61.54%), Query Frame = 1
Query: 85 LIGEALIDLSPLTDGRPVVAEWTILEDATGKAAGQISVSARWVKPLRIGG-DSGPHGLSAEEVEGLMARFSPEKDGQVNYVTFLRECDPPPAVLAVLGQIHAFLSEAAEKEGLCATEALSAVLGIAGSDPKTFVPEEAFVSALLASGKLNTSPEEL 549
LIGEA + L+ L DG + L+D G G + V+ RW +PLR GG D GP+ L+A EVE LMARFSP KDGQV +V FLR DPPPAV+A L ++ AFL + +++G TE + + SD T EE F++AL+ + L+ PEEL
Sbjct: 1054 LIGEAKLSLAALCDGEDITGTLD-LDDEAGCKRGTVRVAVRWRRPLRPGGRDLGPNALTAREVEDLMARFSPHKDGQVRWVAFLRYADPPPAVMAALRRLRAFL-KTQQEDGT--TEPFAFL-----SDGLT---EEQFIAALMGAPNLDEPPEEL 1197
BLAST of mRNA_H-elongata_contig12531.1899.1 vs. uniprot
Match: A0A7S1TSY9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TSY9_9STRA) HSP 1 Score: 110 bits (276), Expect = 1.400e-21 Identity = 98/283 (34.63%), Postives = 123/283 (43.46%), Query Frame = 1
Query: 79 DDLIGEALIDLSPLTDGRPVVAEWTILEDATGKAAGQISVSARWVKPLRIGGDSGPHGLSAEEVEGLMARFSPEKDGQVNYVTFLRECDPPPAVLAVLGQIHAFLSEAAEKEGLCATEALSAVLGIAGSDPKTFVPEEAFVSALLASGK-LNTSPEELAVAYAHAADRGGSDSKSDTTRGLTLEHLAAFAALPGETSALDTASSCCGWVXXXXXXXRPGDGGAPA--RRALVKTRAKCRDAGLLGRSFPGEAFARLDPEGSGRVTRPAFKRALREMGFALVDE 918
D L+GEA + L+PL +G V E + E G I V W +PL + P+ LS EVE L+ +FSP KDG+VNY DPPP + L IH FL A G A E +AGS + E FVS LL L +EL Y H D G++ +TL+ FA RP PA + + K R K + LG P + F R+DP +GRVTR FK ALRE GF LVDE
Sbjct: 760 DPLLGEATVPLAPLANGDAVHQELELSE------GGVIQVHIEWARPLLGAAEKRPNALSGVEVEALLEKFSPVKDGRVNYFGLRDFVDPPPTIQRCLDHIHEFLEGARRDHGQDAAEVFEF---LAGSGRAQGLRVEEFVSGLLKPKVGLGLQADELEACY-HFLDPSGAEF-------VTLDAFLEFA--------------------------RP----VPAFLQAVVNKLRRKISERRQLGLE-PFQPFHRMDPTATGRVTRREFKMALREWGFQLVDE 994
BLAST of mRNA_H-elongata_contig12531.1899.1 vs. uniprot
Match: A0A7S3ZSY2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZSY2_9STRA) HSP 1 Score: 97.8 bits (242), Expect = 2.570e-17 Identity = 92/305 (30.16%), Postives = 131/305 (42.95%), Query Frame = 1
Query: 10 LNFTVMDDRANVIESGEEVWPSGDDLIGEALIDLSPLTDGRPVVAEWTILEDATGKAAGQISVSARWVKPLRIGGDSGPHGLSAEEVEGLMARFSPEKDGQVNYVTFLRECDPPPAVLAVLGQIHAFLSEAAEKEGLCATEALSAVLGIAGSDPKTFVPEEAFVSALLASGKLNTSPEELAVAYAHAADRGGSDSKSDTTRGLTLEHLAAFA--ALPGETSALDTASSCCGWVXXXXXXXRPGDGGAPARRALVKTRAKCRDAGLLGRSFPGEAFARLDPEGSGRVTRPAFKRALREMGFALVDE 918
L FTV+D + E + + D LIG + LS L+DG V + T+L D TG+ G + V RW + L +EV + RFSP KDGQV+Y++FL D PP V A ++ F+ + + G + L ++ D + + E+ F +L A G +S +EL HA K+ + R LE L A P E S +K +A+ LGR G F LDP SGR+ RP F++ LR +GF LVDE
Sbjct: 809 LTFTVLDFQ----EENASIGDADDALIGTCEVPLSLLSDGESVFSTATLLND-TGREVGTLRVCVRWKHAFKQARTPDGSALDEKEVNWCLERFSPRKDGQVDYLSFLHAVDAPPRVDAARQELVQFVEKRRLETGASGRDILESI------DVEA-LSEDEFADSLKAMG-CQSSADELCAFLRHAR-------KAHSGR-FGLEELLQECRRAPPAEASV------------------------------RIKMKAQAERLRRLGRELAGP-FEDLDPARSGRLPRPHFRQGLRGLGFDLVDE 1061
BLAST of mRNA_H-elongata_contig12531.1899.1 vs. uniprot
Match: A0A7S3ZSY1_9STRA (Hypothetical protein (Fragment) n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZSY1_9STRA) HSP 1 Score: 97.8 bits (242), Expect = 2.580e-17 Identity = 92/305 (30.16%), Postives = 131/305 (42.95%), Query Frame = 1
Query: 10 LNFTVMDDRANVIESGEEVWPSGDDLIGEALIDLSPLTDGRPVVAEWTILEDATGKAAGQISVSARWVKPLRIGGDSGPHGLSAEEVEGLMARFSPEKDGQVNYVTFLRECDPPPAVLAVLGQIHAFLSEAAEKEGLCATEALSAVLGIAGSDPKTFVPEEAFVSALLASGKLNTSPEELAVAYAHAADRGGSDSKSDTTRGLTLEHLAAFA--ALPGETSALDTASSCCGWVXXXXXXXRPGDGGAPARRALVKTRAKCRDAGLLGRSFPGEAFARLDPEGSGRVTRPAFKRALREMGFALVDE 918
L FTV+D + E + + D LIG + LS L+DG V + T+L D TG+ G + V RW + L +EV + RFSP KDGQV+Y++FL D PP V A ++ F+ + + G + L ++ D + + E+ F +L A G +S +EL HA K+ + R LE L A P E S +K +A+ LGR G F LDP SGR+ RP F++ LR +GF LVDE
Sbjct: 809 LTFTVLDFQ----EENASIGDADDALIGTCEVPLSLLSDGESVFSTATLLND-TGREVGTLRVCVRWKHAFKQARTPDGSALDEKEVNWCLERFSPRKDGQVDYLSFLHAVDAPPRVDAARQELVQFVEKRRLETGASGRDILESI------DVEA-LSEDEFADSLKAMG-CQSSADELCAFLRHAR-------KAHSGR-FGLEELLQECRRAPPAEASV------------------------------RIKMKAQAERLRRLGRELAGP-FEDLDPARSGRLPRPHFRQGLRGLGFDLVDE 1061
BLAST of mRNA_H-elongata_contig12531.1899.1 vs. uniprot
Match: A0A8K1FPL5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FPL5_PYTOL) HSP 1 Score: 62.8 bits (151), Expect = 1.980e-6 Identity = 85/321 (26.48%), Postives = 127/321 (39.56%), Query Frame = 1
Query: 10 LNFTVMDDRANVIESGEEVWPSGDDLIGEALIDLSPLTDGRPVVAEWTILEDATGKAAGQISVSARWVKPLRI----------GGDSGP---HGLSAEEVEGLMARFSPEKDGQVNYVTFLRECDPPPAVLAVLGQIHAFLSEAAEKEGLCATEALSAVLGIAGSDPKTFVPEEAFVSALLASGKLNTSPEELAVAYAHAADRGGSDSKS------DTTRGLTLEHLAAFAALPGETSALDTASSCCGWVXXXXXXXRPGDGGAPARRALVKTRAKCRDAGLLGRSFPGEAFARLDPEGSGRVTRPAFKRALREMGFALVD 915
L FTV DD+ + + +E +GD +I + I L L G + W L D + AG+ISV W ++ GG S H L ++ +MA FSP+ DG+VNY F+R P A+ + +I L A + E + + G SDP T V A SAL G S +E+ D S +KS ++R + L +L ++ SC + RA ++ + L F + DP +G V+R FKR L +GF L+D
Sbjct: 909 LRFTVFDDQLEL--NDDET--TGDGVISQCGILLDDLVKGESIRG-WFELRDRNDQPAGEISVLIEWKDAFQVAQLYSSSRVNGGRSQMVDLHSLDYDQQHAVMAMFSPQMDGRVNYRQFVRYVLPSAALELLAAKIKERLEYAIDTEQIQNARDIFLKEGTR-SDPLTLVQVPAVQSALAKFGVF-LSNDEVETLVHEFRDVQASVTKSTIVDTNSSSRQVMLHYLLLH---------INPRLSCAERLLLHKIRQTV--------RAYLRPEKNSKPLAL--------PFDKYDPAQTGFVSRAEFKRCLLILGFELLD 1197
BLAST of mRNA_H-elongata_contig12531.1899.1 vs. uniprot
Match: A0A662WLW3_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WLW3_9STRA) HSP 1 Score: 61.6 bits (148), Expect = 4.370e-6 Identity = 51/167 (30.54%), Postives = 76/167 (45.51%), Query Frame = 1
Query: 16 FTVMDDRANVIESGEEVWPSGDDLIGEALIDLSPLTDGRPVVAEWTILEDATGKAAGQISVSARWVKPLRI----------GGDSGP---HGLSAEEVEGLMARFSPEKDGQVNYVTFLRECDPPPAVLAVLGQIHAFLSEAAEKEGL-CATEALSAVLGIAGSDPK 474
TV DD+A +E + G +IG + LS L +G V W L+D G+ AG IS+ +W P ++ G + P H L ++ L+A FSPE DG+VNY FL P + + +I A + E + C +AL G+DP+
Sbjct: 382 ITVFDDQAE-LEDNADADAGG--MIGRCGLMLSDLVNGE-CVRGWFPLKDQNGRHAGDISILIQWKDPFQVLQLSSSQRARGVNGRPIDLHSLDFDQQHALLAMFSPEMDGRVNYRQFLHYAVPSEELELIAAKIKERFEYAIDSEQIACIQDAL-----YEGADPR 539
BLAST of mRNA_H-elongata_contig12531.1899.1 vs. uniprot
Match: A0A7S2W0G9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W0G9_9STRA) HSP 1 Score: 56.6 bits (135), Expect = 4.990e-6 Identity = 28/75 (37.33%), Postives = 40/75 (53.33%), Query Frame = 1
Query: 169 TGKAAGQISVSARWVKPLRIGGDSGPHGLSAEEVEGLMARFSPEKDGQVNYVTFLRECDPPPAVLAVLGQIHAFL 393
T + G + V RW P R ++GP+ L+ +V L+ RFSPEKDGQV + FL PP L ++ F+
Sbjct: 2 TDRTVGSLRVVVRWKHPFRTEHEAGPNALTGVDVTELLHRFSPEKDGQVEWRRFLAWGFPPHKAAHTLSELREFV 76
BLAST of mRNA_H-elongata_contig12531.1899.1 vs. uniprot
Match: A0A7S3K2H8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K2H8_9STRA) HSP 1 Score: 53.1 bits (126), Expect = 6.450e-5 Identity = 31/93 (33.33%), Postives = 52/93 (55.91%), Query Frame = 1
Query: 118 LTDGRPVVAEWTILEDATGKAAGQISVSARWVKPLRIGGDSGPHG-LSAEEVEGLMARFSPEKDGQVNYVTFLRECDPPPAVLAVLGQIHAFL 393
L DG+ + ++ D G AG + V RW + S L+ +E+ ++++FSP KDGQV+YV+FL E D P +V A +++A++
Sbjct: 2 LADGQSIFTTVSLTNDI-GAQAGALRVGIRWKYEFKDPNASIDLATLNGDELRWILSKFSPLKDGQVDYVSFLYEIDAPKSVEACRSKLYAWI 93 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12531.1899.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig12531.1899.1 >prot_H-elongata_contig12531.1899.1 ID=prot_H-elongata_contig12531.1899.1|Name=mRNA_H-elongata_contig12531.1899.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=588bp MDDRANVIESGEEVWPSGDDLIGEALIDLSPLTDGRPVVAEWTILEDATGback to top mRNA from alignment at H-elongata_contig12531:319..3536+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig12531.1899.1 ID=mRNA_H-elongata_contig12531.1899.1|Name=mRNA_H-elongata_contig12531.1899.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3218bp|location=Sequence derived from alignment at H-elongata_contig12531:319..3536+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig12531:319..3536+ >mRNA_H-elongata_contig12531.1899.1 ID=mRNA_H-elongata_contig12531.1899.1|Name=mRNA_H-elongata_contig12531.1899.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3528bp|location=Sequence derived from alignment at H-elongata_contig12531:319..3536+ (Himanthalia elongata Himel1 dioecious)back to top |