mRNA_H-elongata_contig125298.1898.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig125298.1898.1
Unique NamemRNA_H-elongata_contig125298.1898.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig125298.1898.1 vs. uniprot
Match: UPI000CD873B3 (uncharacterized protein LOC111883545 n=1 Tax=Lactuca sativa TaxID=4236 RepID=UPI000CD873B3)

HSP 1 Score: 201 bits (511), Expect = 9.970e-58
Identity = 116/306 (37.91%), Postives = 179/306 (58.50%), Query Frame = 1
Query:   61 VPRTRKNLNADERRVALDDILARNDNGVLRRGACGVVGEKYGASQKSMAALWKRYKAEKAAGRPQTDLSCRRGR---RKPDMAPYKETVSNVPLKPRITQRGIAAAIGLPKTTFRRHMKELGVKPHTRFLKPIISTAGKIERLTWA-RRSTVMTAGGTRKFKGMGNVVHVDEKWFYICKDKQRYYLIDSENPPRRNVQHKRHIMKVMFLVAVGRPRHNSSTNSHFNGKIGIYPFTVQERAQRRSVNRPAGTMVTKTV-EVTKERYKKVMIDHVIPDIKSRFPRPQASAIWVQQDNARPHLINNDPE 963
            +  T+KN   ++R    + +L  + +G L+RGA   V  ++  S ++++ +W + K +   G P   LS    +   RK     + + V ++PL+ R   R +A  + + K+T  R +KE  ++PHT  +KP ++   K  RL +   + +   +     F  M NV+H+DEKWFY+ K  +RYYL+  E+ P R  Q K+ I KVMFL AV RPR ++S N  F+GKIGIYPFT  E A+R S NR AGT+ TK +  VTKE  +  +I+ V+PDI++++PR     I++QQDNA+PH+  ND E
Sbjct:    6 ITHTKKNTTVEQRHAIYEALLQASFSGELQRGAISDVASQFSVSNRTVSRIWHQAKFQINHGLPVV-LSSNMAKVVGRKRVQVDFNQ-VLDIPLRRRSNIRSLANLLNVSKSTMHRRIKEGALRPHTNAIKPTLTHENKRARLEFCLSKISRSLSSNIPTFHDMFNVIHIDEKWFYMSKPSRRYYLVPGEDEPLRTCQSKKFITKVMFLAAVARPRFDASGNEVFSGKIGIYPFTRLEPAKRSSKNRVAGTLETKPILSVTKEVTRSWLIEKVLPDIRAKWPRSHVGPIFIQQDNAKPHIDVNDNE 309          
BLAST of mRNA_H-elongata_contig125298.1898.1 vs. uniprot
Match: A0A1R3HQ96_9ROSI (Transposase, Tc1-like protein n=1 Tax=Corchorus olitorius TaxID=93759 RepID=A0A1R3HQ96_9ROSI)

HSP 1 Score: 196 bits (497), Expect = 7.380e-57
Identity = 115/301 (38.21%), Postives = 178/301 (59.14%), Query Frame = 1
Query:   76 KNLNADERRVALDDILARNDNGVLRRGACGVVGEKYGASQKSMAALWKRYKAEKAAG---RPQTDLSCRRGRRKPDMAPYKETVSNVPLKPRITQRGIAAAIGLPKTTFRRHMKELGVKPHTRFLKPIISTAGKIERLTWARRSTVMTAGG--TRKFKGMGNVVHVDEKWFYICKDKQRYYLIDSENPPRRNVQHKRHIMKVMFLVAVGRPRHNSSTNSHFNGKIGIYPFTVQERAQRRSVNRPAGTMVTKTVEVTKERYKKVMIDHVIPDIKSRFPRPQASAIWVQQDNARPHLINNDPE 963
            +NL   +R+   + +L ++ +GVL +G+   +   +  S K++  +WK+ K     G      + L+   GR+K  + P K  VS +PL+ R   R IA A+ + K+T  R +KE  ++ H+  +KP ++   K  RL +      +T  G  T  F GM N VH+DEKWF++ ++ +RYYL+  E+ P R  + KR I KVMFL AV RPR + S N  F+GKIGI+PF  +E A+R+S NR AGTM TK + VTK+  +  MI+ ++P IKS++P  +   +++QQDNA+PH+   D E
Sbjct:   16 RNLTNQQRQTIYEMLLKQSKDGVLSKGSLTSLATMFSVSPKTIGRIWKQAKLCMENGLIVNVSSKLTGNVGRKKILIDPRK--VSEIPLRRRTNIRSIAKALNMSKSTVHRRVKEGFIRAHSNAVKPDLTDENKKTRLEFCLSKLDLTNAGINTIPFDGMFNQVHIDEKWFFMTRESERYYLLPEEDEPVRTCKSKRFITKVMFLAAVARPRFDESGNVKFSGKIGIFPFVHKEPAKRKSKNRIAGTMETKPMLVTKDVTRAYMIEKILPAIKSKWP-DKMETVYIQQDNAKPHINPKDVE 313          
BLAST of mRNA_H-elongata_contig125298.1898.1 vs. uniprot
Match: UPI000CD9DCB3 (uncharacterized protein LOC111916103 n=1 Tax=Lactuca sativa TaxID=4236 RepID=UPI000CD9DCB3)

HSP 1 Score: 198 bits (503), Expect = 1.560e-56
Identity = 113/309 (36.57%), Postives = 177/309 (57.28%), Query Frame = 1
Query:   64 PRTRKNLNADERRVALDDILARNDNGVLRRGACGVVGEKYGASQKSMAALWKRYKAEKAAGRPQTDLSCRRGRRKPDMAPYKET------VSNVPLKPRITQRGIAAAIGLPKTTFRRHMKELGVKPHTRFLKPIISTAGKIERLTWARRSTVMTA--GGTRKFKGMGNVVHVDEKWFYICKDKQRYYLIDSENPPRRNVQHKRHIMKVMFLVAVGRPRHNSSTNSHFNGKIGIYPFTVQERAQRRSVNRPAGTMVTKTV-EVTKERYKKVMIDHVIPDIKSRFPRPQASAIWVQQDNARPHLINNDPE 963
            P T+KN    +R+     +L  + +G L++G+   V   +  S+++++ +W + K +   G P  D S       P +   K        VS +PL+ R   R +A ++ + K+T  R +KE  ++PHT  +KP ++   +  RL +      +++       F  M NVVH+DEKWFY+ K  +RYYL+  ++ P R  + K+ I K+MFL AV RPR++SS N  F+GKIGIYPFT  E A+R S NR AGTM TK +  V KE  +  +I+ V+PDI++++PR     I++QQDNA+PH+  +D E
Sbjct:    7 PPTKKNTTIAQRQAIFQSLLQESFDGRLKKGSVSEVASLFSVSKRTVSRIWHQGKNQVDHGLP-VDFSSNM----PMVVGQKRVQINLNQVSEIPLRHRSNIRSLAKSLNVSKSTLHRRIKEGVLRPHTNVIKPTLTHENRRARLEYCLSKITLSSLFSPIPTFHDMFNVVHIDEKWFYMSKPSKRYYLVPGDDEPLRTCKSKKFITKIMFLAAVARPRYDSSGNEVFSGKIGIYPFTTLEPAKRSSKNRVAGTMETKPILSVNKEVTRSWLIEKVLPDIRAKWPRGHTGPIFIQQDNAKPHIDVDDSE 310          
BLAST of mRNA_H-elongata_contig125298.1898.1 vs. uniprot
Match: UPI000CD8BE7B (uncharacterized protein LOC111908693 n=1 Tax=Lactuca sativa TaxID=4236 RepID=UPI000CD8BE7B)

HSP 1 Score: 195 bits (495), Expect = 1.160e-55
Identity = 115/307 (37.46%), Postives = 177/307 (57.65%), Query Frame = 1
Query:   64 PRTRKNLNADERRVALDDILARNDNGVLRRGACGVVGEKYGASQKSMAALWKRYKAEKAAGRPQTDLSCRR----GRRKPDMAPYKETVSNVPLKPRITQRGIAAAIGLPKTTFRRHMKELGVKPHTRFLKPIISTAGKIERLTWARRSTVMTA--GGTRKFKGMGNVVHVDEKWFYICKDKQRYYLIDSENPPRRNVQHKRHIMKVMFLVAVGRPRHNSSTNSHFNGKIGIYPFTVQERAQRRSVNRPAGTMVTKTV-EVTKERYKKVMIDHVIPDIKSRFPRPQASAIWVQQDNARPHLINNDPE 963
            P T+KN    +R+     +L  + +G L++G+   V   +  S+++++ +W++ K +   G P  DLS       GR++  +      VS +PL+ R   R +A ++ + K+T  R +KE  ++PHT  +KP ++   K  RL +      +++       F  M NVVH+DEKWFY+ K  +RYYL+  E+ P R  + K+ I KVMFL AV RPR +SS N  F+GKIGIYPFT    A+R S NR AGT+ TK +  V KE  K  +I+ V+ DI++++PR     I++QQDN +PH+  ND E
Sbjct:    7 PLTKKNTTIAQRQTIFQVLLQESLDGRLKKGSASEVASLFSVSKRTVSRIWRQGKNQVDQGLP-VDLSLNMSMVVGRKRIQI--NLNQVSEIPLRRRSNIRSLAKSLNVSKSTMHRWIKEGVLRPHTNAIKPTLTHENKRARLEFCLSKITLSSLFSPLPTFYDMFNVVHIDEKWFYMSKPSKRYYLVPGEDEPLRTCKSKKFITKVMFLAAVARPRFDSSGNEVFSGKIGIYPFTTLVPAKRSSKNRVAGTLETKPILSVNKEITKSWLIEKVLSDIRAKWPRGHTGPIFIQQDNVKPHVDVNDSE 310          
BLAST of mRNA_H-elongata_contig125298.1898.1 vs. uniprot
Match: Q75LI7_ORYSJ (Transposon protein, putative, Mariner sub-class n=5 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q75LI7_ORYSJ)

HSP 1 Score: 198 bits (504), Expect = 1.700e-55
Identity = 122/300 (40.67%), Postives = 175/300 (58.33%), Query Frame = 1
Query:   76 KNLNADERRVALDDILARNDNGVLRRGACGVVGEKYGASQKSMAALWKRYKAEKAAGRPQTDLSCRR----GRRKPDMAPYKETVSNVPLKPRITQRGIAAAIGLPKTTFRRHMKELGVKPHTRFLKPIISTAGKIERLTWARRSTVM-TAGGTRKFKGMGNVVHVDEKWFYICKDKQRYYLIDSENPPRRNVQHKRHIMKVMFLVAVGRPRHNSSTNSHFNGKIGIYPFTVQERAQRRSVNRPAGTMVTKTVEVTKERYKKVMIDHVIPDIKSRFPRPQA-SAIWVQQDNARPHLINND 957
            KNL   +R+   D ++ +  NG LR+ A   V E +   +  +  +W+R K  +A G P  ++S R+    GR+K ++      V+NVPL+ R T R  A+A G+PK+T  R +KE  ++ H+  LKP++    K  RL W        T     KF  M N+VH+DEKWF   K  + +YL+  E+ P R VQ+K  I KVMFL AV RPR+N      F+GKIG++PFT +E AQR S NRP GT+VTKT++V ++  +  +I  V+P I S +PR  A S IW+QQDNA  H+  +D
Sbjct:  139 KNLTNIQRQEIYDALVKKTINGRLRKKATTEVAEMFNIKRGRVQDIWRRAKQCRAQGIP-VNVSSRKKTNSGRKKNEID--LSDVANVPLQLRGTLRSFASAAGIPKSTLHRMLKEGLIRRHSNTLKPLLKEENKRSRLQWCISMLDWHTLPNEPKFVDMRNIVHIDEKWFNTTKKTRTFYLVHWEDDPYRPVQNKNSIDKVMFLAAVARPRYNEEGICTFDGKIGLWPFTKKEPAQRTSQNRPRGTLVTKTIKVDRDTVRSFLIAKVLPAIISSWPRDDAHSTIWIQQDNAPAHVPVDD 435          
BLAST of mRNA_H-elongata_contig125298.1898.1 vs. uniprot
Match: W4GIW7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GIW7_9STRA)

HSP 1 Score: 196 bits (498), Expect = 2.310e-55
Identity = 123/302 (40.73%), Postives = 171/302 (56.62%), Query Frame = 1
Query:   73 RKNLNADERRVALDDILAR-NDNGVLRRGACGVVGEKYGASQKSMAALWKRYKAEKAAG-RPQTDLSCR-RGR--RKPDMAPYKETVSNVPLKPRITQRGIAAAIGLPKTTFRRHMKELGVKPHTRFLKPIISTAGKIERLTWARRSTVMTAGGTRKFKGMGNVVHVDEKWFYICKDKQRYYLIDSENPPRRNVQHKRHIMKVMFLVAVGRPRHNSSTNSHFNGKIGIYPFTVQERAQRRSVNRPAGTMVTKTVEVTKERYKKVMIDHVIPDIKSRFPRPQASAIWVQQDNARPHLINNDPE 963
            RKNL   ER   L  +L R    G L RGA   V  ++G  + ++  +WKR   +   G RP  D+S + +GR  RK       + +  +P   R T R IAAA+ +PKTT  R+ K+     ++  LKP ++ A K+ RL W+  +      G  +F  M + VHVDEKW +  + +  YYL   E PP R  + K HIMKVMFL AV RPR ++ + S F+GKIG + FT    A+R S NRPAGTM    V VT+  YK+++I+ VIP IK+R+P+ +   I +QQDNARPH+   D E
Sbjct:    2 RKNLTDVERNAVLQRLLIRMQPGGKLPRGAMVDVALEFGVVRSTVRRIWKRACVDVHGGVRPCADVSSQMKGRVGRKQVHESISQRLQAIPKARRTTFRSIAAAMNVPKTTLHRYYKKGLFIKYSSVLKPSLTDANKVVRLKWSVDALRSGLDGGLRFDDMMDCVHVDEKWLFASRVRATYYLAKGEEPPHRTTKSKLHIMKVMFLSAVVRPRWDNESGSWFDGKIGTWHFTEWNPAKRSSRNRPAGTMELSAVSVTRRVYKQMLINKVIPAIKARWPKEETCKIRIQQDNARPHVSPLDAE 303          
BLAST of mRNA_H-elongata_contig125298.1898.1 vs. uniprot
Match: A0A834FW95_RHOSS (Uncharacterized protein n=3 Tax=Rhododendron simsii TaxID=118357 RepID=A0A834FW95_RHOSS)

HSP 1 Score: 194 bits (494), Expect = 4.100e-55
Identity = 121/306 (39.54%), Postives = 177/306 (57.84%), Query Frame = 1
Query:   67 RTRKNLNADERRVALDDILARNDNGVLRRGACGVVGEKYGASQKSMAALWKRYKAEKAAGRPQTDLSCRR----GRRKPDMAPYKETVSNVPLKPRITQRGIAAAIGLPKTTFRRHMKELGVKPHTRFLKPIISTAGKIERLTWARRSTVMTAGGTRK-FKGMGNVVHVDEKWFYICKDKQRYYLIDSENPPRRNVQHKRHIMKVMFLVAVGRPRHNSSTNSHFNGKIGIYPFTVQERAQRRSVNRPAGTMVTKTVE-VTKERYKKVMIDHVIPDIKSRFPRPQAS-AIWVQQDNARPHLINNDPE 963
            R   NL  ++R+     +L R  +G L RG    V   +  S K++  +W R KA +A G  + D+S ++    GR++ ++   K  V  +    R   R  + A+ +PK+T  + +KE  ++PHT  LKP +S   KI RL +        +  T+  FK M N VH+DEKWFY+ K+ +RYY++  E+ P R  + KR I KVMFL AV RPR  ++    F+GKIGI+PFTV+E A+R S NR AGTM TK V  VTK+  +  +I+ VIP I+S++ +      I++QQDNARPH+  ND E
Sbjct:   14 RPNHNLTNEQRKEIFQALLLRTVDGKLTRGCVPEVATMFSVSNKTIHRIWSRAKACEAHG-SKVDVSSKKRRRVGRKRREIDWNK--VRGIAFHRRTNIRSFSEALEVPKSTLHQRIKEGEIRPHTNPLKPNLSDQNKIARLHFCLSMLEPNSLQTQPMFKAMYNYVHIDEKWFYMTKESERYYVLPDEDQPHRTCKSKRFITKVMFLAAVARPRFGANGCEEFSGKIGIFPFTVKEPAKRTSKNRLAGTMETKAVAAVTKDVIRSYLIEKVIPAIQSKWHQSSVGETIYIQQDNARPHIKPNDVE 316          
BLAST of mRNA_H-elongata_contig125298.1898.1 vs. uniprot
Match: A0A834LPB9_RHOSS (Uncharacterized protein n=1 Tax=Rhododendron simsii TaxID=118357 RepID=A0A834LPB9_RHOSS)

HSP 1 Score: 193 bits (490), Expect = 1.560e-54
Identity = 117/305 (38.36%), Postives = 179/305 (58.69%), Query Frame = 1
Query:   67 RTRKNLNADERRVALDDILARNDNGVLRRGACGVVGEKYGASQKSMAALWKRYKAEKAAGRP---QTDLSCRRGRRKPDMAPYKETVSNVPLKPRITQRGIAAAIGLPKTTFRRHMKELGVKPHTRFLKPIISTAGKIERLTWARRSTVMTAGGTRK-FKGMGNVVHVDEKWFYICKDKQRYYLIDSENPPRRNVQHKRHIMKVMFLVAVGRPRHNSSTNSHFNGKIGIYPFTVQERAQRRSVNRPAGTMVTKTV-EVTKERYKKVMIDHVIPDIKSRFPRPQA-SAIWVQQDNARPHLINNDPE 963
            R ++NL   +RR  L+ + +++ +G L+RG    V   Y    +++  + ++  +  A G       +L  R GR++  +   K  ++ +P   R   R IA A+ +P+TT  R +K+  ++PHT  LKP +S  GK  RL +       ++  ++  FK M N VH+DEKWF++ K+ +RYYL+  EN P R  + K  I KVMFL AV RPR +++ N  F+GKIGI+PFT +E A+R S NR AGT+ TK V  VTKE  +K +I+ V+P I++++PR      I +QQDNARPH+   D E
Sbjct:   13 REKRNLTDQQRREILEILFSKSASGKLKRGCLKEVAAMYSVDPRTVRQIVQKANSCIAKGLTVDVSPNLRGRVGRKRVQLDLNK--IAALPYSQRTNIRSIAEALEVPRTTIHRRVKDGVMRPHTNPLKPCLSEEGKRARLQFCLSMLEPSSLQSQPTFKNMYNYVHIDEKWFFMTKESERYYLLPHENEPLRTCKSKHFITKVMFLAAVARPRFDTTRNQEFSGKIGIFPFTYKEPAKRTSKNRVAGTLETKVVVSVTKEIIRKCLIEKVLPAIRAKWPRGNGIETILIQQDNARPHIREFDAE 315          
BLAST of mRNA_H-elongata_contig125298.1898.1 vs. uniprot
Match: UPI000CD9BE6A (uncharacterized protein LOC111905831 n=2 Tax=Lactuca sativa TaxID=4236 RepID=UPI000CD9BE6A)

HSP 1 Score: 191 bits (486), Expect = 2.740e-54
Identity = 115/304 (37.83%), Postives = 175/304 (57.57%), Query Frame = 1
Query:   70 TRKNLNADERRVALDDILARNDNGVLRRGACGVVGEKYGASQKSMAALWKRYKAEKAAGRPQTDLSCRR----GRRKPDMAPYKETVSNVPLKPRITQRGIAAAIGLPKTTFRRHMKELGVKPHTRFLKPIISTAGKIERLTWARRS-TVMTAGGTRKFKGMGNVVHVDEKWFYICKDKQRYYLIDSENPPRRNVQHKRHIMKVMFLVAVGRPRHNSSTNSHFNGKIGIYPFTVQERAQRRSVNRPAGTMVTKTV-EVTKERYKKVMIDHVIPDIKSRFPRPQASAIWVQQDNARPHLINNDPE 963
            T+K+    + +     +L  N NG LRRG+   V   +G S+++++ +W R K +   G    D S ++    GR++  +      VS +PL+ R T + IA ++G+ K+T  R +KE  ++P T  +KP ++ A K +RL +     T         F  M NV+H+DEKWFYI +  +RYYL+  E+ P R  + K+ I KVMFL AV R R ++  N  F GKIGI+P T +E A+R S NR AGT+ TK +  VTKE  +  +I+ V+P IK+++P      I++QQDNA+PH+  ND E
Sbjct:    9 TKKHTTYAQCQDIFQALLQHNSNGELRRGSINDVAALFGVSKRTVSRIWNRAKLQVENGSI-IDFSSKKLKVVGRKRVQLD--LNQVSQIPLRRRTTIQSIAKSLGIVKSTLHRRIKEGDLRPRTNAIKPDLTDANKTKRLEFCLSMITRSLPESNTTFHDMFNVIHIDEKWFYISRSSKRYYLVPGEDEPLRTCKSKKFITKVMFLAAVARLRFDALGNEIFFGKIGIFPLTTKEPAKRSSKNRVAGTLETKPILSVTKEITRSWLIEKVLPAIKAKWPPNHTGPIFIQQDNAKPHIDVNDNE 309          
BLAST of mRNA_H-elongata_contig125298.1898.1 vs. uniprot
Match: A0A6A4Z1S9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4Z1S9_9STRA)

HSP 1 Score: 191 bits (486), Expect = 3.480e-54
Identity = 116/301 (38.54%), Postives = 174/301 (57.81%), Query Frame = 1
Query:   70 TRKNLNADERRVALDDILARNDNGVLRRGACGVVGEKYGASQKSMAALWKRYKAEKA-AGRPQTDL--SCRRGRR-KPDMAPYKETVSNVPLKPRITQRGIAAAIGLPKTTFRRHMKELGVKPHTRFLKPIISTAGKIERLTWARRSTVMTAGGTRKFKGMGNVVHVDEKWFYICKDKQRYYLIDSENPPRRNVQHKRHIMKVMFLVAVGRPRHNSSTNSHFNGKIGIYPFTVQERAQRRSVNRPAGTMVTKTVEVTKERYKKVMIDHVIPDIKSRFPRPQASAIWVQQDNARPHLINNDP 960
            T  +L  D+R     D+L    +G L RG    + +KYG S+++++ +WKR +  +  +GR    L    R GRR K  +   +  V +VP   R T   +AA+ G+P TT  R ++   ++  T  LKP+++   K +R+ + R     T+ G  ++  M N VH+DEKWFY+    +RYYL   E  P R    KRHI+KVMFL AV RPR + +T + ++GKIG++PF     A+R+S NR  GT VT  V VTK  Y+  ++ HVIP IK+ +P  ++  I++QQDNARPH+  +DP
Sbjct:    6 TNSDLPDDQRWSLYHDLLESKHSGRLARGVAAELLKKYGISRQTLSKIWKRGQQTRVQSGRADVGLRKKGRSGRRPKRTLDEVESAVKSVPPHLRKTFASLAASSGIPPTTLWRVLQTKKLQRRTSRLKPMVTDKHKADRVEFVRSFVRPTSDGQMRWDDMHNRVHIDEKWFYLTLVNRRYYLWHDEAVPVRKCTSKRHIIKVMFLTAVARPRFDYTTRTMWDGKIGMWPFVSVVPARRKSKNRDRGTPVTTPVTVTKPVYRDYLLTHVIPRIKAVWPGRRSDPIYIQQDNARPHVEVDDP 306          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig125298.1898.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI000CD873B39.970e-5837.91uncharacterized protein LOC111883545 n=1 Tax=Lactu... [more]
A0A1R3HQ96_9ROSI7.380e-5738.21Transposase, Tc1-like protein n=1 Tax=Corchorus ol... [more]
UPI000CD9DCB31.560e-5636.57uncharacterized protein LOC111916103 n=1 Tax=Lactu... [more]
UPI000CD8BE7B1.160e-5537.46uncharacterized protein LOC111908693 n=1 Tax=Lactu... [more]
Q75LI7_ORYSJ1.700e-5540.67Transposon protein, putative, Mariner sub-class n=... [more]
W4GIW7_9STRA2.310e-5540.73Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A834FW95_RHOSS4.100e-5539.54Uncharacterized protein n=3 Tax=Rhododendron simsi... [more]
A0A834LPB9_RHOSS1.560e-5438.36Uncharacterized protein n=1 Tax=Rhododendron simsi... [more]
UPI000CD9BE6A2.740e-5437.83uncharacterized protein LOC111905831 n=2 Tax=Lactu... [more]
A0A6A4Z1S9_9STRA3.480e-5438.54Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig125298contigH-elongata_contig125298:555..1530 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score193.4
Seed ortholog evalue1.7e-46
Seed eggNOG ortholog38727.Pavir.Ga00690.1.p
EggNOG OGs2CMKC@1,2QQNW@2759,37TMG@33090,3GG9M@35493,3IN2T@38820,3M2XW@4447
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size963
Cds size963
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929740.3114674-CDS-H-elongata_contig125298:554..14641622929740.3114674-CDS-H-elongata_contig125298:554..1464Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig125298 555..1464 +
1691679139.508853-CDS-H-elongata_contig125298:554..14641691679139.508853-CDS-H-elongata_contig125298:554..1464Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig125298 555..1464 +
1622929740.329977-CDS-H-elongata_contig125298:1477..15301622929740.329977-CDS-H-elongata_contig125298:1477..1530Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig125298 1478..1530 +
1691679139.5185695-CDS-H-elongata_contig125298:1477..15301691679139.5185695-CDS-H-elongata_contig125298:1477..1530Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig125298 1478..1530 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig125298.1898.1prot_H-elongata_contig125298.1898.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig125298 555..1530 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig125298.1898.1

>prot_H-elongata_contig125298.1898.1 ID=prot_H-elongata_contig125298.1898.1|Name=mRNA_H-elongata_contig125298.1898.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=321bp
VSANESAVGAGSGAGAAAAAVPRTRKNLNADERRVALDDILARNDNGVLR
RGACGVVGEKYGASQKSMAALWKRYKAEKAAGRPQTDLSCRRGRRKPDMA
PYKETVSNVPLKPRITQRGIAAAIGLPKTTFRRHMKELGVKPHTRFLKPI
ISTAGKIERLTWARRSTVMTAGGTRKFKGMGNVVHVDEKWFYICKDKQRY
YLIDSENPPRRNVQHKRHIMKVMFLVAVGRPRHNSSTNSHFNGKIGIYPF
TVQERAQRRSVNRPAGTMVTKTVEVTKERYKKVMIDHVIPDIKSRFPRPQ
ASAIWVQQDNARPHLINNDPE
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mRNA from alignment at H-elongata_contig125298:555..1530+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig125298.1898.1 ID=mRNA_H-elongata_contig125298.1898.1|Name=mRNA_H-elongata_contig125298.1898.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=976bp|location=Sequence derived from alignment at H-elongata_contig125298:555..1530+ (Himanthalia elongata Himel1 dioecious)
GTGTCGGCGAACGAGAGTGCTGTTGGTGCTGGTTCTGGTGCTGGAGCTGC TGCTGCTGCTGTACCCCGGACGAGAAAGAACCTCAACGCCGACGAGCGAA GAGTGGCGCTTGATGACATCCTAGCCCGCAACGACAACGGTGTGCTCCGC AGGGGTGCCTGCGGAGTGGTAGGTGAGAAGTATGGAGCCAGTCAAAAGTC TATGGCTGCGCTGTGGAAACGGTACAAAGCCGAAAAGGCTGCGGGCAGGC CTCAGACTGATTTGTCTTGTAGGCGTGGCCGTCGTAAACCAGACATGGCG CCTTACAAGGAGACGGTAAGCAACGTCCCGCTCAAGCCGCGCATTACACA AAGGGGCATAGCTGCAGCGATCGGTCTTCCTAAGACAACATTTCGGCGTC ACATGAAGGAACTTGGGGTGAAGCCGCACACACGGTTTTTGAAACCGATT ATCTCTACCGCCGGCAAGATAGAACGGCTGACATGGGCGAGGCGCTCGAC TGTCATGACTGCGGGGGGAACTCGCAAATTCAAGGGGATGGGAAACGTGG TGCACGTGGACGAAAAATGGTTCTACATCTGCAAAGACAAGCAGAGATAC TATCTGATCGACAGCGAGAACCCCCCGAGGCGGAACGTTCAGCACAAACG TCACATAATGAAGGTGATGTTTCTGGTAGCTGTTGGGCGGCCAAGGCACA ACAGCTCCACCAACTCGCATTTTAACGGGAAGATAGGAATCTACCCCTTC ACAGTGCAAGAGCGAGCCCAGCGAAGGAGCGTCAACAGGCCTGCCGGCAC TATGGTGACCAAGACAGTGGAGGTCACCAAGGAGAGATACAAGAAGGTGA TGATCGACCACGTTATCCCCGACATCAAGAGCCGGTTTCCCCGCCCGCAG GCGAGCGCCAGTCCGCAAGAGAGTTTGGGTGCAGCAGGACAACGCCCGGC CCCACCTTATCAACAATGACCCAGAA
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Coding sequence (CDS) from alignment at H-elongata_contig125298:555..1530+

>mRNA_H-elongata_contig125298.1898.1 ID=mRNA_H-elongata_contig125298.1898.1|Name=mRNA_H-elongata_contig125298.1898.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1926bp|location=Sequence derived from alignment at H-elongata_contig125298:555..1530+ (Himanthalia elongata Himel1 dioecious)
GTGTCGGCGAACGAGAGTGCTGTTGGTGCTGGTTCTGGTGCTGGAGCTGC
TGCTGCTGCTGTACCCCGGACGAGAAAGAACCTCAACGCCGACGAGCGAA
GAGTGGCGCTTGATGACATCCTAGCCCGCAACGACAACGGTGTGCTCCGC
AGGGGTGCCTGCGGAGTGGTAGGTGAGAAGTATGGAGCCAGTCAAAAGTC
TATGGCTGCGCTGTGGAAACGGTACAAAGCCGAAAAGGCTGCGGGCAGGC
CTCAGACTGATTTGTCTTGTAGGCGTGGCCGTCGTAAACCAGACATGGCG
CCTTACAAGGAGACGGTAAGCAACGTCCCGCTCAAGCCGCGCATTACACA
AAGGGGCATAGCTGCAGCGATCGGTCTTCCTAAGACAACATTTCGGCGTC
ACATGAAGGAACTTGGGGTGAAGCCGCACACACGGTTTTTGAAACCGATT
ATCTCTACCGCCGGCAAGATAGAACGGCTGACATGGGCGAGGCGCTCGAC
TGTCATGACTGCGGGGGGAACTCGCAAATTCAAGGGGATGGGAAACGTGG
TGCACGTGGACGAAAAATGGTTCTACATCTGCAAAGACAAGCAGAGATAC
TATCTGATCGACAGCGAGAACCCCCCGAGGCGGAACGTTCAGCACAAACG
TCACATAATGAAGGTGATGTTTCTGGTAGCTGTTGGGCGGCCAAGGCACA
ACAGCTCCACCAACTCGCATTTTAACGGGAAGATAGGAATCTACCCCTTC
ACAGTGCAAGAGCGAGCCCAGCGAAGGAGCGTCAACAGGCCTGCCGGCAC
TATGGTGACCAAGACAGTGGAGGTCACCAAGGAGAGATACAAGAAGGTGA
TGATCGACCACGTTATCCCCGACATCAAGAGCCGGTTTCCCCGCCCGCAG
GCGAGCGCCAGTGTCGGCGAACGAGAGTGCTGTTGGTGCTGGTTCTGGTG
CTGGAGCTGCTGCTGCTGCTGTACCCCGGACGAGAAAGAACCTCAACGCC
GACGAGCGAAGAGTGGCGCTTGATGACATCCTAGCCCGCAACGACAACGG
TGTGCTCCGCAGGGGTGCCTGCGGAGTGGTAGGTGAGAAGTATGGAGCCA
GTCAAAAGTCTATGGCTGCGCTGTGGAAACGGTACAAAGCCGAAAAGGCT
GCGGGCAGGCCTCAGACTGATTTGTCTTGTAGGCGTGGCCGTCGTAAACC
AGACATGGCGCCTTACAAGGAGACGGTAAGCAACGTCCCGCTCAAGCCGC
GCATTACACAAAGGGGCATAGCTGCAGCGATCGGTCTTCCTAAGACAACA
TTTCGGCGTCACATGAAGGAACTTGGGGTGAAGCCGCACACACGGTTTTT
GAAACCGATTATCTCTACCGCCGGCAAGATAGAACGGCTGACATGGGCGA
GGCGCTCGACTGTCATGACTGCGGGGGGAACTCGCAAATTCAAGGGGATG
GGAAACGTGGTGCACGTGGACGAAAAATGGTTCTACATCTGCAAAGACAA
GCAGAGATACTATCTGATCGACAGCGAGAACCCCCCGAGGCGGAACGTTC
AGCACAAACGTCACATAATGAAGGTGATGTTTCTGGTAGCTGTTGGGCGG
CCAAGGCACAACAGCTCCACCAACTCGCATTTTAACGGGAAGATAGGAAT
CTACCCCTTCACAGTGCAAGAGCGAGCCCAGCGAAGGAGCGTCAACAGGC
CTGCCGGCACTATGGTGACCAAGACAGTGGAGGTCACCAAGGAGAGATAC
AAGAAGGTGATGATCGACCACGTTATCCCCGACATCAAGAGCCGGTTTCC
CCGCCCGCAGGCGAGCGCCATTTGGGTGCAGCAGGACAACGCCCGGCCCC
ACCTTATCAACAATGACCCAGAATTTGGGTGCAGCAGGACAACGCCCGGC
CCCACCTTATCAACAATGACCCAGAA
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