prot_H-elongata_contig12511.1890.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig12511.1890.1
Unique Nameprot_H-elongata_contig12511.1890.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length149
Homology
BLAST of mRNA_H-elongata_contig12511.1890.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK)

HSP 1 Score: 135 bits (341), Expect = 3.870e-34
Identity = 68/146 (46.58%), Postives = 96/146 (65.75%), Query Frame = 0
Query:    4 WRKAEEIEMRGMVDNCVYKQVARPKDKFVVGTKMLYKRKVGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSSTPSTASIRMLLATAAAKDGELRHFDAEQAFLTADIGEELYIEIPEEYRKFPGAVGRLNKAIYGLVQAGRCWNNK 149
            WRKA E E+       V+++V RP+D+ ++G+K ++K K G DG+VEKYK RLVAQGF QVEG+ Y E ++    + SIR+LLA AA  D E+   D + AFL  ++ EE+Y+++P  ++    AV RL KA+YGL QA R W  K
Sbjct: 1010 WRKACEAELEMFKQLGVFEEVPRPRDRKIIGSKWVFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAARHDWEIHQMDVKSAFLNGELEEEIYMKVPPGHKASADAVWRLKKALYGLKQASREWYKK 1155          
BLAST of mRNA_H-elongata_contig12511.1890.1 vs. uniprot
Match: A0A401H317_9APHY (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401H317_9APHY)

HSP 1 Score: 127 bits (318), Expect = 4.710e-31
Identity = 65/147 (44.22%), Postives = 94/147 (63.95%), Query Frame = 0
Query:    3 RWRKAEEIEMRGMVDNCVYKQVARPKDKFVVGTKMLYKRKVGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSSTPSTASIRMLLATAAAKDGELRHFDAEQAFLTADIGEELYIEIPEEYRKFPGAVGRLNKAIYGLVQAGRCWNNK 149
            RW+ A   E+   V   +Y +V RP+++ V+  K ++K K G DG++EKYK RLVA+GF QVEG+ + E ++     AS+R LLA AA  D E+   D + AFL  D+ EE+Y+++P  +R+    V +LNKA+YGL QAGR W  K
Sbjct:  881 RWKAACAEELHAFVKAELYDEVERPQNRKVIDCKWVFKIKRGPDGEIEKYKARLVAKGFTQVEGLDFNETFAPVAKFASVRTLLALAAKLDLEIHQMDVKSAFLNGDLDEEIYMKVPPGFRRSNSLVWKLNKALYGLKQAGREWYKK 1027          
BLAST of mRNA_H-elongata_contig12511.1890.1 vs. uniprot
Match: A0A401H123_9APHY (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Sparassis crispa TaxID=139825 RepID=A0A401H123_9APHY)

HSP 1 Score: 126 bits (317), Expect = 6.440e-31
Identity = 64/147 (43.54%), Postives = 94/147 (63.95%), Query Frame = 0
Query:    3 RWRKAEEIEMRGMVDNCVYKQVARPKDKFVVGTKMLYKRKVGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSSTPSTASIRMLLATAAAKDGELRHFDAEQAFLTADIGEELYIEIPEEYRKFPGAVGRLNKAIYGLVQAGRCWNNK 149
            RW+ A   E+   V   +Y +V RP+++ V+  K ++K K G DG++EKYK RLVA+GF QVEG+ + E ++     AS+R LLA AA  D E+   D + AFL  D+ EE+Y+++P  +R+    + +LNKA+YGL QAGR W  K
Sbjct:  617 RWKAACAEELHAFVKAELYDKVERPRNRKVIDCKWVFKIKRGLDGEIEKYKARLVAKGFTQVEGLDFNETFAPVAKFASVRTLLALAAKLDLEIHQMDVKSAFLNGDLDEEIYMKVPSGFRRSNSLIWKLNKALYGLKQAGREWYKK 763          
BLAST of mRNA_H-elongata_contig12511.1890.1 vs. uniprot
Match: A0A401G4V0_9APHY (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Sparassis crispa TaxID=139825 RepID=A0A401G4V0_9APHY)

HSP 1 Score: 125 bits (314), Expect = 1.670e-30
Identity = 64/147 (43.54%), Postives = 93/147 (63.27%), Query Frame = 0
Query:    3 RWRKAEEIEMRGMVDNCVYKQVARPKDKFVVGTKMLYKRKVGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSSTPSTASIRMLLATAAAKDGELRHFDAEQAFLTADIGEELYIEIPEEYRKFPGAVGRLNKAIYGLVQAGRCWNNK 149
            RW+ A   E+   V   +Y +V RP+++ V+  K ++K K G DG++EKYK RLVA+GF QVEG+ + E ++     AS+R LLA AA  D E+   D + AFL  D+ EE+Y+++P  + +    V +LNKA+YGL QAGR W  K
Sbjct:  940 RWKAACAEELHAFVKAELYDEVERPRNRKVIDCKWVFKIKRGPDGEIEKYKARLVAKGFTQVEGLDFNETFAPVAKFASVRTLLALAAKLDLEIHQMDVKSAFLNGDLDEEIYMKVPPGFHRSNSLVWKLNKALYGLKQAGREWYKK 1086          
BLAST of mRNA_H-elongata_contig12511.1890.1 vs. uniprot
Match: A0A401GM49_9APHY (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GM49_9APHY)

HSP 1 Score: 125 bits (313), Expect = 2.250e-30
Identity = 66/147 (44.90%), Postives = 90/147 (61.22%), Query Frame = 0
Query:    3 RWRKAEEIEMRGMVDNCVYKQVARPKDKFVVGTKMLYKRKVGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSSTPSTASIRMLLATAAAKDGELRHFDAEQAFLTADIGEELYIEIPEEYRKFPGAVGRLNKAIYGLVQAGRCWNNK 149
            RW+ A   E+   V   +Y +V RP+++ VV  K ++K K G DG++EKYK RLVA+GF QVEG+ + E ++      SIR LLA  A  D E+   D + AFL  D+ EE+Y+ IP  +RK    + RLNKA+YGL QAG  W  K
Sbjct:  892 RWKAACTEELHAFVKAELYDEVERPRNRKVVDCKWVFKIKRGPDGEIEKYKARLVAKGFTQVEGLDFNETFAPVAKFTSIRTLLALTAKLDLEIHQMDVKSAFLNGDLDEEIYMNIPPSFRKDNKLIWRLNKALYGLKQAGHKWYKK 1038          
BLAST of mRNA_H-elongata_contig12511.1890.1 vs. uniprot
Match: A0A7D9D6Q5_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9D6Q5_PARCT)

HSP 1 Score: 123 bits (308), Expect = 1.040e-29
Identity = 62/147 (42.18%), Postives = 96/147 (65.31%), Query Frame = 0
Query:    4 WRKAEEIEMRGMVDNCVYKQVARPKDKFVVGTKMLYKRKVGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSSTPSTASIRMLLATAAAKDGELRHFDAEQAFLTADIGEELYIEIPEEY--RKFPGAVGRLNKAIYGLVQAGRCWNN 148
            W++A + E   +++N  ++ V+ PK K VVG+K ++K K  ++G V++YK RLVAQG+ Q EGV Y+E +S      +IR LLA + AK+ E+   D + AFL  ++ EE+Y+  P+ Y  ++ P  V +L K+IYGL Q+ RCWNN
Sbjct:  825 WKQATDSENNSLIENETWELVSLPKGKNVVGSKWVFKVKTDENGCVQRYKARLVAQGYTQAEGVDYSEVFSPVVRNTTIRSLLALSNAKNWEVHQMDVKTAFLQGNLEEEIYMRQPDGYVNKELPNHVCKLKKSIYGLKQSARCWNN 971          
BLAST of mRNA_H-elongata_contig12511.1890.1 vs. uniprot
Match: A0A4Y9XTU1_9APHY (Integrase catalytic domain-containing protein n=1 Tax=Fomitopsis rosea TaxID=34475 RepID=A0A4Y9XTU1_9APHY)

HSP 1 Score: 122 bits (307), Expect = 1.450e-29
Identity = 66/146 (45.21%), Postives = 89/146 (60.96%), Query Frame = 0
Query:    4 WRKAEEIEMRGMVDNCVYKQVARPKDKFVVGTKMLYKRKVGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSSTPSTASIRMLLATAAAKDGELRHFDAEQAFLTADIGEELYIEIPEEYRKFPGAVGRLNKAIYGLVQAGRCWNNK 149
            W+ A   E+       +Y +V RP+++ VVG K ++K K G DG++EKYK RLVA+GF QVE V Y E ++ T   ++IR LLA AAA D E+   D + AFL  D+ EE+Y+  P  +   P  V RL KA+YGL QA R W  K
Sbjct:  964 WKAACAEELLSFTKAELYDEVERPRNRKVVGCKWVFKIKRGPDGEIEKYKARLVAKGFTQVEDVDYDETFAPTTKFSTIRTLLALAAAHDLEIHQMDVKSAFLNGDLDEEIYMACPPGFEDRPDIVWRLRKALYGLKQASRQWYKK 1109          
BLAST of mRNA_H-elongata_contig12511.1890.1 vs. uniprot
Match: A0A7D9IUY0_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9IUY0_PARCT)

HSP 1 Score: 122 bits (305), Expect = 2.690e-29
Identity = 63/147 (42.86%), Postives = 91/147 (61.90%), Query Frame = 0
Query:    4 WRKAEEIEMRGMVDNCVYKQVARPKDKFVVGTKMLYKRKVGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSSTPSTASIRMLLATAAAKDGELRHFDAEQAFLTADIGEELYIEIPEEYR--KFPGAVGRLNKAIYGLVQAGRCWNN 148
            W+KA + E   +++N  ++ V  P DK +VG++ ++K K   DG VEK+K RLVAQG+ Q EG+ Y E +S      SIR LLA A   D E+   D   AFL  D+ +E+Y++ PE YR  + P  V +L K++YGL Q+ RCWN+
Sbjct:  848 WKKATDSEFNALMENGTWELVPPPDDKNIVGSRWVFKVKRKADGSVEKFKARLVAQGYSQTEGIDYNEVFSPVVRNTSIRSLLALANILDWEIHQMDVRTAFLQGDLTDEIYMKQPEGYRSKENPDHVCKLKKSLYGLKQSARCWNS 994          
BLAST of mRNA_H-elongata_contig12511.1890.1 vs. uniprot
Match: A0A060SSE0_PYCCI (Integrase catalytic domain-containing protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SSE0_PYCCI)

HSP 1 Score: 121 bits (304), Expect = 3.690e-29
Identity = 65/148 (43.92%), Postives = 93/148 (62.84%), Query Frame = 0
Query:    2 ERWRKAEEIEMRGMVDNCVYKQVARPKDKFVVGTKMLYKRKVGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSSTPSTASIRMLLATAAAKDGELRHFDAEQAFLTADIGEELYIEIPEEYRKFPGAVGRLNKAIYGLVQAGRCWNNK 149
            E+W+ A   E+       +Y +V RP+++ VV  K +++ K G DGK++KYK RLVA+GF QVEGV YT+ ++     ASIRMLLA AA  D E+   D + AFL  D+ EE+++E P  +++    V RL K++YGL QA R W  K
Sbjct:  977 EQWKAACAEELLSFAKAELYDEVERPRNRKVVDCKWVFRIKHGPDGKIQKYKARLVAKGFTQVEGVDYTDTFAPVTKFASIRMLLAFAAKHDLEVHQMDVKSAFLNGDLEEEIFMEAPPGFQQDKAHVWRLQKSLYGLKQASREWYKK 1124          
BLAST of mRNA_H-elongata_contig12511.1890.1 vs. uniprot
Match: A0A061F8M9_THECC (Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 n=1 Tax=Theobroma cacao TaxID=3641 RepID=A0A061F8M9_THECC)

HSP 1 Score: 120 bits (302), Expect = 5.160e-29
Identity = 63/152 (41.45%), Postives = 95/152 (62.50%), Query Frame = 0
Query:    4 WRKAEEIEMRGMVDNCVYKQVARPKDKFVVGTKMLYKRKVGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSSTPSTASIRMLLATAAAKDGELRHFDAEQAFLTADIGEELYIEIPEEY---RKFPGA---VGRLNKAIYGLVQAGRCWNNK 149
            W++A +IE++ + DN  +  V  P +   VG K +YK K+  DGKVE+YK RLVA+G+ Q+EG  Y E +S       +RM  A AAA++  L   D   AFL  ++ EE+Y+E+P+ Y   R++P +   V +L+K++YGL QA R WN+K
Sbjct:  172 WKEAMDIELKALEDNGTWSIVQLPSNYHAVGCKWVYKVKLNADGKVERYKARLVAKGYNQIEGFDYQETFSPVARQTIVRMFFALAAAQNWRLSQLDINNAFLNGELTEEVYMELPQGYTFKREYPTSSRLVCKLHKSLYGLKQASRAWNSK 323          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12511.1890.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0C2WN23_AMAMK3.870e-3446.58Integrase catalytic domain-containing protein (Fra... [more]
A0A401H317_9APHY4.710e-3144.22Retrovirus-related Pol polyprotein from transposon... [more]
A0A401H123_9APHY6.440e-3143.54Retrovirus-related Pol polyprotein from transposon... [more]
A0A401G4V0_9APHY1.670e-3043.54Retrovirus-related Pol polyprotein from transposon... [more]
A0A401GM49_9APHY2.250e-3044.90Retrovirus-related Pol polyprotein from transposon... [more]
A0A7D9D6Q5_PARCT1.040e-2942.18Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A4Y9XTU1_9APHY1.450e-2945.21Integrase catalytic domain-containing protein n=1 ... [more]
A0A7D9IUY0_PARCT2.690e-2942.86Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A060SSE0_PYCCI3.690e-2943.92Integrase catalytic domain-containing protein n=1 ... [more]
A0A061F8M9_THECC5.160e-2941.45Cysteine-rich RLK (RECEPTOR-like protein kinase) 8... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 20..148
e-value: 1.3E-29
score: 103.5
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 2..149
NoneNo IPR availablePANTHERPTHR11439:SF273coord: 2..149

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12511contigH-elongata_contig12511:7173..7619 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12511.1890.1mRNA_H-elongata_contig12511.1890.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig12511 7173..7619 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig12511.1890.1 ID=prot_H-elongata_contig12511.1890.1|Name=mRNA_H-elongata_contig12511.1890.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=149bp
MERWRKAEEIEMRGMVDNCVYKQVARPKDKFVVGTKMLYKRKVGQDGKVE
KYKCRLVAQGFWQVEGVHYTEKYSSTPSTASIRMLLATAAAKDGELRHFD
AEQAFLTADIGEELYIEIPEEYRKFPGAVGRLNKAIYGLVQAGRCWNNK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like