mRNA_H-elongata_contig125107.1889.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig125107.1889.1
Unique NamemRNA_H-elongata_contig125107.1889.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig125107.1889.1 vs. uniprot
Match: D7FQY0_ECTSI (Dihydroorotase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQY0_ECTSI)

HSP 1 Score: 335 bits (859), Expect = 4.360e-113
Identity = 156/191 (81.68%), Postives = 174/191 (91.10%), Query Frame = 1
Query:    1 PLVHKMPELKMVLEHITTSEAVAFVSAAPPNVAATITPQHLLYNRNAIFQGGICPHMYCLPVLKRETHRLDLVKAATSGNPKFFLGTDSAPHAKEAKLSPCGCAGIFTGHAALELYCEIFDGEGSLDRLAAFCSHFGADFYGLPRNEGVETIVKEEWMVPVSYAFGESQVVPLRAGQKVDWQMVGDAKCPR 573
            PLV KMP LK+V+EHITTSEAVAFV+AAP NVAATITPQHLLYNRNAIFQGGI PHMYCLPVLKRETHRLDLVKAATSGNPKFFLGTD+APHA+EAK+SPCGCAGIFTGHAALELYCE+F+GEG+LDR A F SH GADFYG+PRNEG  T+VKE+W VP SY FG+++VVPLRAG+ V WQMVG+ K P+
Sbjct:  163 PLVQKMPNLKVVMEHITTSEAVAFVTAAPANVAATITPQHLLYNRNAIFQGGIRPHMYCLPVLKRETHRLDLVKAATSGNPKFFLGTDTAPHAREAKISPCGCAGIFTGHAALELYCEVFEGEGALDRFAGFSSHHGADFYGIPRNEGALTLVKEKWTVPGSYKFGQTEVVPLRAGEDVCWQMVGEGKRPK 353          
BLAST of mRNA_H-elongata_contig125107.1889.1 vs. uniprot
Match: A0A835ZAN4_9STRA (Dihydroorotase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAN4_9STRA)

HSP 1 Score: 273 bits (699), Expect = 8.250e-89
Identity = 129/190 (67.89%), Postives = 148/190 (77.89%), Query Frame = 1
Query:    1 PLVHKMPELKMVLEHITTSEAVAFVSAAPPNVAATITPQHLLYNRNAIFQGGICPHMYCLPVLKRETHRLDLVKAATSGNPKFFLGTDSAPHAKEAKLSPCGCAGIFTGHAALELYCEIFDGEGSLDRLAAFCSHFGADFYGLPRNEGVETIVKEEWMVPVSYAFGESQVVPLRAGQKVDWQMVGDAKCP 570
            PLV + P LK+V EHITT EA  FV ++ PNVAATITPQHLLYNRN IF+GG+ PHMYCLP+LKRE HRL LV AATSG+ K FLGTDSAPHA+ AK S CGCAGIF+GHAALELY E+FD  G+LD   AFCS  GADFYGLPRN    T+ +E W VP SYAFG S+VVPLRAG+ V WQ+  + + P
Sbjct:  165 PLVARFPNLKVVAEHITTKEAAEFVLSSGPNVAATITPQHLLYNRNEIFRGGVRPHMYCLPILKREEHRLALVGAATSGSAKIFLGTDSAPHARGAKESACGCAGIFSGHAALELYAEVFDAAGALDSFGAFCSQRGADFYGLPRNAATVTLAREPWRVPASYAFGASEVVPLRAGEHVAWQIADEGRRP 354          
BLAST of mRNA_H-elongata_contig125107.1889.1 vs. uniprot
Match: A0A6M4H5M7_9PROT (Dihydroorotase n=1 Tax=Usitatibacter palustris TaxID=2732487 RepID=A0A6M4H5M7_9PROT)

HSP 1 Score: 266 bits (681), Expect = 2.930e-86
Identity = 126/185 (68.11%), Postives = 145/185 (78.38%), Query Frame = 1
Query:    1 PLVHKMPELKMVLEHITTSEAVAFVSAAPPNVAATITPQHLLYNRNAIFQGGICPHMYCLPVLKRETHRLDLVKAATSGNPKFFLGTDSAPHAKEAKLSPCGCAGIFTGHAALELYCEIFDGEGSLDRLAAFCSHFGADFYGLPRNEGVETIVKEEWMVPVSYAFGESQVVPLRAGQKVDWQMVG 555
            PL+ +  +LK+VLEHITT EA  FV  AP NVAATITPQHLL NRNAIF GG+ PH YCLPVLKRE HR  LVK ATSGNPKFFLG+D+APHA+  K + CGCAGI++ HAALELY E F+  G+LD+L AF SHFGADFYGLPRN+   T+ K EW VP  YAFGES VVPLRAG+K+ W+  G
Sbjct:  161 PLLKRFAKLKVVLEHITTHEAAVFVERAPDNVAATITPQHLLMNRNAIFAGGLRPHHYCLPVLKREQHRRALVKVATSGNPKFFLGSDTAPHARPTKETSCGCAGIYSAHAALELYAEAFETAGALDKLEAFASHFGADFYGLPRNKAKVTLEKTEWEVPAEYAFGESTVVPLRAGEKLRWRFAG 345          
BLAST of mRNA_H-elongata_contig125107.1889.1 vs. uniprot
Match: A0A0S8G8N3_9PROT (Dihydroorotase (Fragment) n=1 Tax=Acidithiobacillales bacterium SM23_46 TaxID=1703385 RepID=A0A0S8G8N3_9PROT)

HSP 1 Score: 259 bits (661), Expect = 3.220e-84
Identity = 122/184 (66.30%), Postives = 142/184 (77.17%), Query Frame = 1
Query:    4 LVHKMPELKMVLEHITTSEAVAFVSAAPPNVAATITPQHLLYNRNAIFQGGICPHMYCLPVLKRETHRLDLVKAATSGNPKFFLGTDSAPHAKEAKLSPCGCAGIFTGHAALELYCEIFDGEGSLDRLAAFCSHFGADFYGLPRNEGVETIVKEEWMVPVSYAFGESQVVPLRAGQKVDWQMVG 555
            L  + P+L+MVLEH+TT E VAFV  + PNVAATIT  HLL NRNA+F GGI PH YCLPVLKRETHR  LV+AATSGNPKFFLGTDSAPHAK  K + CGCAGI+T HAALELY E F+  G+LDRL AF SHFG DFY LPRN G  T++KE W VP   AFG+ ++VP+RAG+ + W+  G
Sbjct:   87 LAREFPKLRMVLEHVTTREGVAFVEQSGPNVAATITAHHLLLNRNAMFAGGIRPHAYCLPVLKRETHRAALVRAATSGNPKFFLGTDSAPHAKRLKEAACGCAGIYTAHAALELYAEAFEQSGALDRLEAFASHFGPDFYRLPRNLGTVTLMKETWRVPGELAFGDERLVPMRAGEILTWKFAG 270          
BLAST of mRNA_H-elongata_contig125107.1889.1 vs. uniprot
Match: A0A1G5Q761_9GAMM (Dihydroorotase n=1 Tax=Thiohalomonas denitrificans TaxID=415747 RepID=A0A1G5Q761_9GAMM)

HSP 1 Score: 261 bits (666), Expect = 5.470e-84
Identity = 122/186 (65.59%), Postives = 147/186 (79.03%), Query Frame = 1
Query:    1 PLVHKMPELKMVLEHITTSEAVAFVSAAPPNVAATITPQHLLYNRNAIFQGGICPHMYCLPVLKRETHRLDLVKAATSGNPKFFLGTDSAPHAKEAKLSPCGCAGIFTGHAALELYCEIFDGEGSLDRLAAFCSHFGADFYGLPRNEGVETIVKEEWMVPVSYAFGESQVVPLRAGQKVDWQMVGD 558
            PL+ + P+LK+V+EHITT EAV FV  A  NVAAT+TP HLL NRNA+  GGI PH YCLPVLKRE+HR  L++A+TSGNP+FFLGTDSAPHA+ AK + CGCAGI++ HAALELY E F+  G+LDRL AF +H+GADFYGLPRN G  T+ K EW VP SYAFG   +VPLRAG+ V W++V D
Sbjct:  160 PLLERHPDLKVVMEHITTREAVEFVKRAGANVAATVTPHHLLMNRNALLAGGIRPHHYCLPVLKRESHREALLEASTSGNPRFFLGTDSAPHARGAKETACGCAGIYSAHAALELYTEAFEQAGALDRLEAFAAHYGADFYGLPRNSGSVTLEKSEWRVPESYAFGGDHLVPLRAGETVAWRLVSD 345          
BLAST of mRNA_H-elongata_contig125107.1889.1 vs. uniprot
Match: A0A1Y0G5K2_9PROT (Dihydroorotase n=1 Tax=Sulfuriferula sp. AH1 TaxID=1985873 RepID=A0A1Y0G5K2_9PROT)

HSP 1 Score: 260 bits (665), Expect = 7.740e-84
Identity = 119/184 (64.67%), Postives = 142/184 (77.17%), Query Frame = 1
Query:    1 PLVHKMPELKMVLEHITTSEAVAFVSAAPPNVAATITPQHLLYNRNAIFQGGICPHMYCLPVLKRETHRLDLVKAATSGNPKFFLGTDSAPHAKEAKLSPCGCAGIFTGHAALELYCEIFDGEGSLDRLAAFCSHFGADFYGLPRNEGVETIVKEEWMVPVSYAFGESQVVPLRAGQKVDWQMV 552
            PL    P LK+VLEHITT++  AFVSAAP N+AATIT  HLLYNRNA+FQGGI PH YCLP+LKRE HRL LV+AATSGNPKFFLGTDSAPHA+ AK + CGCAGI+T HAA+ELY E F+  G+LD+L  F SHFGADFYGL RN G  T+ KE W+ P   + G  Q++PLRA + + W++ 
Sbjct:  160 PLTRAFPALKIVLEHITTAQGAAFVSAAPANIAATITAHHLLYNRNAMFQGGIRPHYYCLPILKREQHRLALVQAATSGNPKFFLGTDSAPHARSAKEATCGCAGIYTAHAAIELYAEAFEAAGALDKLEGFASHFGADFYGLSRNTGSITLAKESWIAPAHISIGNEQLIPLRAHEAIAWRLA 343          
BLAST of mRNA_H-elongata_contig125107.1889.1 vs. uniprot
Match: A0A537D4W8_9PROT (Dihydroorotase n=3 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537D4W8_9PROT)

HSP 1 Score: 258 bits (658), Expect = 1.240e-82
Identity = 119/184 (64.67%), Postives = 143/184 (77.72%), Query Frame = 1
Query:    1 PLVHKMPELKMVLEHITTSEAVAFVSAAPPNVAATITPQHLLYNRNAIFQGGICPHMYCLPVLKRETHRLDLVKAATSGNPKFFLGTDSAPHAKEAKLSPCGCAGIFTGHAALELYCEIFDGEGSLDRLAAFCSHFGADFYGLPRNEGVETIVKEEWMVPVSYAFGESQVVPLRAGQKVDWQMV 552
            P++   P LK+VLEH+TT EA  F++AAP +V ATITPQHLL++RNA+  GGI PH+YCLP+LKRE+HR  LVKAATSGNPKFFLGTDSAPHA+ AK S CGCAG +T HAALELY E F+  G+LD+L AF S  GADFYGLPRN    T+++E W VP  YAFG   VVPL AGQ + W++V
Sbjct:  161 PILRDFPALKVVLEHVTTREAAEFIAAAPAHVGATITPQHLLHSRNALLAGGIRPHLYCLPILKRESHRQALVKAATSGNPKFFLGTDSAPHARNAKQSACGCAGCYTAHAALELYAEAFETAGALDKLEAFASFHGADFYGLPRNGDTVTLMREAWTVPAEYAFGSHAVVPLNAGQTMRWRLV 344          
BLAST of mRNA_H-elongata_contig125107.1889.1 vs. uniprot
Match: A0A1Q4GQE3_9PROT (Dihydroorotase n=1 Tax=Thiobacillus sp. 65-29 TaxID=1895862 RepID=A0A1Q4GQE3_9PROT)

HSP 1 Score: 256 bits (653), Expect = 4.910e-82
Identity = 124/184 (67.39%), Postives = 144/184 (78.26%), Query Frame = 1
Query:    4 LVHKMPELKMVLEHITTSEAVAFVSAAPPNVAATITPQHLLYNRNAIFQGGICPHMYCLPVLKRETHRLDLVKAATSGNPKFFLGTDSAPHAKEAKLSPCGCAGIFTGHAALELYCEIFDGEGSLDRLAAFCSHFGADFYGLPRNEGVETIVKEEWMVPVSYAFGESQVVPLRAGQKVDWQMVG 555
            L+   P LK+VLEHITT +A  FV+AAP +VAATIT  HLLYNRNA+F+GG+ PH YCLPVLKRE HR  LV AATSGNPKFFLGTDSAPHA  AK S CGCAGI++ HAALELY E F+  G+LDRL AF S FGADFYGLPRN G  T+ +E W VP   AFGE+ +VPLRAG+ + W++VG
Sbjct:  161 LLQDFPRLKIVLEHITTRQAAEFVAAAPAHVAATITVHHLLYNRNAMFRGGLRPHFYCLPVLKRERHREALVAAATSGNPKFFLGTDSAPHAVGAKESGCGCAGIYSAHAALELYAEAFEDAGALDRLEAFASFFGADFYGLPRNTGRVTLRRETWTVPERLAFGEAALVPLRAGETLRWRVVG 344          
BLAST of mRNA_H-elongata_contig125107.1889.1 vs. uniprot
Match: A0A5C7ELI9_9PROT (Dihydroorotase n=3 Tax=Proteobacteria TaxID=1224 RepID=A0A5C7ELI9_9PROT)

HSP 1 Score: 255 bits (652), Expect = 6.350e-82
Identity = 118/184 (64.13%), Postives = 142/184 (77.17%), Query Frame = 1
Query:    1 PLVHKMPELKMVLEHITTSEAVAFVSAAPPNVAATITPQHLLYNRNAIFQGGICPHMYCLPVLKRETHRLDLVKAATSGNPKFFLGTDSAPHAKEAKLSPCGCAGIFTGHAALELYCEIFDGEGSLDRLAAFCSHFGADFYGLPRNEGVETIVKEEWMVPVSYAFGESQVVPLRAGQKVDWQMV 552
            PL+ + P LK+VLEHITT EAV FV+ APP VAATIT  HLL+NRN +F+GG+ PH YCLPVLKRE HR  LV AATSGNPKFFLGTDSAPH + AK + CGCAGI+T HAALELY E F+  G+LD+L AF S  G  FYGLPRN G  T+V+E W VP +Y FG+  VVP+RAG+++ W++ 
Sbjct:  157 PLIERYPRLKVVLEHITTEEAVRFVTLAPPRVAATITAHHLLWNRNQLFEGGLRPHHYCLPVLKRERHRQALVAAATSGNPKFFLGTDSAPHPRRAKEATCGCAGIYTAHAALELYAEAFEAAGALDKLEAFASFNGPAFYGLPRNAGTVTLVREPWRVPETYPFGDEVVVPMRAGERIAWRLA 340          
BLAST of mRNA_H-elongata_contig125107.1889.1 vs. uniprot
Match: A0A1G0NB72_9PROT (Dihydroorotase n=1 Tax=Hydrogenophilales bacterium RIFOXYD1_FULL_62_11 TaxID=1798415 RepID=A0A1G0NB72_9PROT)

HSP 1 Score: 255 bits (652), Expect = 6.960e-82
Identity = 117/183 (63.93%), Postives = 144/183 (78.69%), Query Frame = 1
Query:    4 LVHKMPELKMVLEHITTSEAVAFVSAAPPNVAATITPQHLLYNRNAIFQGGICPHMYCLPVLKRETHRLDLVKAATSGNPKFFLGTDSAPHAKEAKLSPCGCAGIFTGHAALELYCEIFDGEGSLDRLAAFCSHFGADFYGLPRNEGVETIVKEEWMVPVSYAFGESQVVPLRAGQKVDWQMV 552
            L+   P LK+VLEHITT +A  FV+AAP NVAAT+T  HLLYNRNA+FQGGI PH+YCLP+LKRETHR  LV AA SGNPKFFLGTDSAPHA  AK S CGCAGI++ HAA+ELY E+FD  G+LD+L AF S +GADFYGLPRN    T+ +E W+ P   + GE+Q++PLR G+K+ W+++
Sbjct:  162 LMRDFPRLKIVLEHITTRQAAEFVAAAPTNVAATLTVHHLLYNRNAMFQGGIRPHLYCLPILKRETHREALVAAAISGNPKFFLGTDSAPHALGAKESSCGCAGIYSAHAAIELYAEVFDAAGALDKLEAFASFYGADFYGLPRNIDTITLQRESWLAPQQLSMGEAQLIPLRGGEKIHWRVM 344          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig125107.1889.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQY0_ECTSI4.360e-11381.68Dihydroorotase n=1 Tax=Ectocarpus siliculosus TaxI... [more]
A0A835ZAN4_9STRA8.250e-8967.89Dihydroorotase n=1 Tax=Tribonema minus TaxID=30337... [more]
A0A6M4H5M7_9PROT2.930e-8668.11Dihydroorotase n=1 Tax=Usitatibacter palustris Tax... [more]
A0A0S8G8N3_9PROT3.220e-8466.30Dihydroorotase (Fragment) n=1 Tax=Acidithiobacilla... [more]
A0A1G5Q761_9GAMM5.470e-8465.59Dihydroorotase n=1 Tax=Thiohalomonas denitrificans... [more]
A0A1Y0G5K2_9PROT7.740e-8464.67Dihydroorotase n=1 Tax=Sulfuriferula sp. AH1 TaxID... [more]
A0A537D4W8_9PROT1.240e-8264.67Dihydroorotase n=3 Tax=Betaproteobacteria bacteriu... [more]
A0A1Q4GQE3_9PROT4.910e-8267.39Dihydroorotase n=1 Tax=Thiobacillus sp. 65-29 TaxI... [more]
A0A5C7ELI9_9PROT6.350e-8264.13Dihydroorotase n=3 Tax=Proteobacteria TaxID=1224 R... [more]
A0A1G0NB72_9PROT6.960e-8263.93Dihydroorotase n=1 Tax=Hydrogenophilales bacterium... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig125107contigH-elongata_contig125107:121..1344 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score327.4
Seed ortholog evalue4.4e-87
Seed eggNOG ortholog2880.D7FQY0
Preferred nameURA4
KEGG rclassRC00632
KEGG koko:K01465
KEGG ReactionR01993
KEGG Pathwayko00240,ko01100,map00240,map01100
KEGG ModuleM00051
GOsGO:0003674,GO:0003824,GO:0004151,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006139,GO:0006206,GO:0006207,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009112,GO:0009117,GO:0009165,GO:0009987,GO:0016787,GO:0016810,GO:0016812,GO:0018130,GO:0019438,GO:0019637,GO:0019856,GO:0034641,GO:0034654,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046112,GO:0046483,GO:0046872,GO:0046914,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.dihydroorotase activity
EggNOG OGsCOG0418@1,KOG2902@2759
EC3.5.2.3
COG Functional cat.F
BiGG ReactioniMM904.YLR420W,iND750.YLR420W
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAmidohydrolase 1
Ec32 orthologEc-09_003330.1
Exons4
Model size585
Cds size570
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig125107.1889.1prot_H-elongata_contig125107.1889.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig125107 136..1344 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929738.7281306-UTR-H-elongata_contig125107:120..1351622929738.7281306-UTR-H-elongata_contig125107:120..135Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig125107 121..135 +
1691679138.973376-UTR-H-elongata_contig125107:120..1351691679138.973376-UTR-H-elongata_contig125107:120..135Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig125107 121..135 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929739.1170375-CDS-H-elongata_contig125107:135..2701622929739.1170375-CDS-H-elongata_contig125107:135..270Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig125107 136..270 +
1691679138.9869118-CDS-H-elongata_contig125107:135..2701691679138.9869118-CDS-H-elongata_contig125107:135..270Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig125107 136..270 +
1622929739.1528037-CDS-H-elongata_contig125107:512..6661622929739.1528037-CDS-H-elongata_contig125107:512..666Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig125107 513..666 +
1691679138.9998252-CDS-H-elongata_contig125107:512..6661691679138.9998252-CDS-H-elongata_contig125107:512..666Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig125107 513..666 +
1622929739.1707945-CDS-H-elongata_contig125107:887..9661622929739.1707945-CDS-H-elongata_contig125107:887..966Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig125107 888..966 +
1691679139.0078106-CDS-H-elongata_contig125107:887..9661691679139.0078106-CDS-H-elongata_contig125107:887..966Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig125107 888..966 +
1622929739.1913664-CDS-H-elongata_contig125107:1142..13441622929739.1913664-CDS-H-elongata_contig125107:1142..1344Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig125107 1143..1344 +
1691679139.01683-CDS-H-elongata_contig125107:1142..13441691679139.01683-CDS-H-elongata_contig125107:1142..1344Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig125107 1143..1344 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig125107.1889.1

>prot_H-elongata_contig125107.1889.1 ID=prot_H-elongata_contig125107.1889.1|Name=mRNA_H-elongata_contig125107.1889.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=190bp
MPELKMVLEHITTSEAVAFVSAAPPNVAATITPQHLLYNRNAIFQGGICP
HMYCLPVLKRETHRLDLVKAATSGNPKFFLGTDSAPHAKEAKLSPCGCAG
IFTGHAALELYCEIFDGEGSLDRLAAFCSHFGADFYGLPRNEGVETIVKE
EWMVPVSYAFGESQVVPLRAGQKVDWQMVGDAKCPRKSS*
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mRNA from alignment at H-elongata_contig125107:121..1344+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig125107.1889.1 ID=mRNA_H-elongata_contig125107.1889.1|Name=mRNA_H-elongata_contig125107.1889.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1224bp|location=Sequence derived from alignment at H-elongata_contig125107:121..1344+ (Himanthalia elongata Himel1 dioecious)
CCGCTCGTGCATAAAATGCCCGAGCTCAAGATGGTACTGGAACACATCAC CACCTCCGAGGCCGTTGCTTTCGTCTCAGCCGCCCCGCCAAACGTAGCAG CTACCATAACTCCGCAGCACCTTCTGTACAACCGCAACGCGATTTTCCAG GTGATATAAAAGCGCGCTTCTTTGCTTTGTACTCGCACGCGCGTGCGATA TATATTTAGTCTTATACTGAAATGGTTGCTAGCTACGCTGCGCTGCTGTA GCCGGCGCCACATGTCTGTCTCTATATTGTTGCATGATTATTTAATACCA AAGTCCCTATCAAAGTTTGACGAGCGCGCCCAACCTCCGGGGACATGGCA ATGTCGATCGATTTTATGCTGTTGGTGTGGTGCACTCTCTAGGGAGGCAT CTGCCCCCACATGTATTGCCTTCCCGTTTTGAAGCGGGAGACGCACCGGC TAGATCTGGTAAAAGCGGCCACTAGCGGGAACCCAAAGTTTTTTCTGGGT ACGGATTCTGCGCCGCATGCTAAAGAGGCCAAGCTTTCTCCATGTGGTGA GATATTTTTCGCGCTTTTAATAGTACCCGCCGTTCGCCGTTTAAGTTCGA TTCAATGTATATCGCGTCCCGTAATATTTTGCTGGTGAAATTCTCTGCCA AATGATGACGGTAGCAGATGCGCATATATCTAATACTAGATTCAAATTAA CCAAAGCATAGCGTAATCGAACTCTAAAGCATAATATGTCGCGACCGAGG ACTGTCACGTGGGATAGGTTGCGCTGGTATCTTCACGGGGCACGCCGCCT TGGAGCTGTACTGCGAGATCTTCGATGGCGAAGGCAGTTTAGACAGGTAC AAGGCGGTAAACTTGACAGCGTTTATGTAGGGATGGATGATAAATCACAC TGGTTCAATGAAACGATGAAATGCACCACATGGAAAGTTTTCCACCCGAC TTGCTATTATCGTGTATTTTTGTACTAATTTGAATCTTGATTATTTCATT TGTGTACACATCCCACTCGCAGACTGGCGGCCTTCTGCAGCCATTTCGGA GCAGATTTCTACGGTCTACCCCGCAACGAGGGTGTCGAAACCATCGTCAA GGAAGAGTGGATGGTGCCAGTTTCATACGCATTCGGCGAGTCGCAAGTTG TGCCGCTGCGAGCCGGTCAGAAGGTCGACTGGCAAATGGTAGGAGATGCC AAGTGTCCTCGTAAGTCGTCGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig125107:121..1344+

>mRNA_H-elongata_contig125107.1889.1 ID=mRNA_H-elongata_contig125107.1889.1|Name=mRNA_H-elongata_contig125107.1889.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1140bp|location=Sequence derived from alignment at H-elongata_contig125107:121..1344+ (Himanthalia elongata Himel1 dioecious)
ATGCCCGAGCTCAAGATGGTACTGGAACACATCACCACCTCCGAGGCCGT
TGCTTTCGTCTCAGCCGCCCCGCCAAACGTAGCAGCTACCATAACTCCGC
AGCACCTTCTGTACAACCGCAACGCGATTTTCCAGATGCCCGAGCTCAAG
ATGGTACTGGAACACATCACCACCTCCGAGGCCGTTGCTTTCGTCTCAGC
CGCCCCGCCAAACGTAGCAGCTACCATAACTCCGCAGCACCTTCTGTACA
ACCGCAACGCGATTTTCCAGGGAGGCATCTGCCCCCACATGTATTGCCTT
CCCGTTTTGAAGCGGGAGACGCACCGGCTAGATCTGGTAAAAGCGGCCAC
TAGCGGGAACCCAAAGTTTTTTCTGGGTACGGATTCTGCGCCGCATGCTA
AAGAGGCCAAGCTTTCTCCATGTGGGAGGCATCTGCCCCCACATGTATTG
CCTTCCCGTTTTGAAGCGGGAGACGCACCGGCTAGATCTGGTAAAAGCGG
CCACTAGCGGGAACCCAAAGTTTTTTCTGGGTACGGATTCTGCGCCGCAT
GCTAAAGAGGCCAAGCTTTCTCCATGTGGTTGCGCTGGTATCTTCACGGG
GCACGCCGCCTTGGAGCTGTACTGCGAGATCTTCGATGGCGAAGGCAGTT
TAGACAGGTTGCGCTGGTATCTTCACGGGGCACGCCGCCTTGGAGCTGTA
CTGCGAGATCTTCGATGGCGAAGGCAGTTTAGACAGACTGGCGGCCTTCT
GCAGCCATTTCGGAGCAGATTTCTACGGTCTACCCCGCAACGAGGGTGTC
GAAACCATCGTCAAGGAAGAGTGGATGGTGCCAGTTTCATACGCATTCGG
CGAGTCGCAAGTTGTGCCGCTGCGAGCCGGTCAGAAGGTCGACTGGCAAA
TGGTAGGAGATGCCAAGTGTCCTCGTAAGTCGTCGTGAACTGGCGGCCTT
CTGCAGCCATTTCGGAGCAGATTTCTACGGTCTACCCCGCAACGAGGGTG
TCGAAACCATCGTCAAGGAAGAGTGGATGGTGCCAGTTTCATACGCATTC
GGCGAGTCGCAAGTTGTGCCGCTGCGAGCCGGTCAGAAGGTCGACTGGCA
AATGGTAGGAGATGCCAAGTGTCCTCGTAAGTCGTCGTGA
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